Mustafa Erhan Ozer
| Snapshot Date: 2025-04-28 17:48 -0400 (Mon, 28 Apr 2025) |
| git_url: https://git.bioconductor.org/packages/SVMDO |
| git_branch: RELEASE_3_21 |
| git_last_commit: 8259124 |
| git_last_commit_date: 2025-04-15 13:15:07 -0400 (Tue, 15 Apr 2025) |
| Back to Multiple platform build/check report for BioC 3.21: simplified long |
|
This page was generated on 2025-05-01 11:41 -0400 (Thu, 01 May 2025).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 24.04.1 LTS) | x86_64 | 4.5.0 RC (2025-04-04 r88126) -- "How About a Twenty-Six" | 4832 |
| palomino7 | Windows Server 2022 Datacenter | x64 | 4.5.0 RC (2025-04-04 r88126 ucrt) -- "How About a Twenty-Six" | 4574 |
| merida1 | macOS 12.7.5 Monterey | x86_64 | 4.5.0 RC (2025-04-04 r88126) -- "How About a Twenty-Six" | 4599 |
| kjohnson1 | macOS 13.6.6 Ventura | arm64 | 4.5.0 RC (2025-04-04 r88129) -- "How About a Twenty-Six" | 4553 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 2139/2341 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| SVMDO 1.8.0 (landing page) Mustafa Erhan Ozer
| nebbiolo1 | Linux (Ubuntu 24.04.1 LTS) / x86_64 | OK | OK | OK | | ||||||||
| palomino7 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | | ||||||||
| merida1 | macOS 12.7.5 Monterey / x86_64 | OK | OK | OK | OK | | ||||||||
| kjohnson1 | macOS 13.6.6 Ventura / arm64 | OK | OK | OK | OK | | ||||||||
|
To the developers/maintainers of the SVMDO package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/SVMDO.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: SVMDO |
| Version: 1.8.0 |
| Command: E:\biocbuild\bbs-3.21-bioc\R\bin\R.exe CMD check --no-multiarch --install=check:SVMDO.install-out.txt --library=E:\biocbuild\bbs-3.21-bioc\R\library --no-vignettes --timings SVMDO_1.8.0.tar.gz |
| StartedAt: 2025-04-29 10:29:38 -0400 (Tue, 29 Apr 2025) |
| EndedAt: 2025-04-29 10:35:44 -0400 (Tue, 29 Apr 2025) |
| EllapsedTime: 366.3 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: SVMDO.Rcheck |
| Warnings: 0 |
##############################################################################
##############################################################################
###
### Running command:
###
### E:\biocbuild\bbs-3.21-bioc\R\bin\R.exe CMD check --no-multiarch --install=check:SVMDO.install-out.txt --library=E:\biocbuild\bbs-3.21-bioc\R\library --no-vignettes --timings SVMDO_1.8.0.tar.gz
###
##############################################################################
##############################################################################
* using log directory 'E:/biocbuild/bbs-3.21-bioc/meat/SVMDO.Rcheck'
* using R version 4.5.0 RC (2025-04-04 r88126 ucrt)
* using platform: x86_64-w64-mingw32
* R was compiled by
gcc.exe (GCC) 14.2.0
GNU Fortran (GCC) 14.2.0
* running under: Windows Server 2022 x64 (build 20348)
* using session charset: UTF-8
* using option '--no-vignettes'
* checking for file 'SVMDO/DESCRIPTION' ... OK
* this is package 'SVMDO' version '1.8.0'
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'SVMDO' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in 'vignettes' ... OK
* checking examples ... OK
* checking for unstated dependencies in 'tests' ... OK
* checking tests ...
Running 'testthat.R'
OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: OK
SVMDO.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### E:\biocbuild\bbs-3.21-bioc\R\bin\R.exe CMD INSTALL SVMDO ### ############################################################################## ############################################################################## * installing to library 'E:/biocbuild/bbs-3.21-bioc/R/library' * installing *source* package 'SVMDO' ... ** this is package 'SVMDO' version '1.8.0' ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (SVMDO)
SVMDO.Rcheck/tests/testthat.Rout
R version 4.5.0 RC (2025-04-04 r88126 ucrt) -- "How About a Twenty-Six"
Copyright (C) 2025 The R Foundation for Statistical Computing
Platform: x86_64-w64-mingw32/x64
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/tests.html
> # * https://testthat.r-lib.org/reference/test_package.html#special-files
>
> library(testthat)
> library(SVMDO)
Loading required package: shiny
>
> test_check("SVMDO")
'select()' returned 1:1 mapping between keys and columns
--> No gene can be mapped....
--> Expected input gene ID: 1555,5599,5105,2702,23400,89866
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 632,4256,10875,952,64087,4232
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 9091,5445,344905,3060,79949,5501
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5327,6721,57511,79934,6720,6340
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 644096,8675,6351,3627,6648,6789
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 9388,2992,2731,6263,5345,4543
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 9945,4282,123283,1594,2695,54809
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 10059,55699,9559,1203,4942,5594
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 285848,2731,9445,10577,275,2538
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2693,54476,706,57215,2952,488
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 51119,5444,6319,5629,22845,23175
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 7077,5506,2146,10466,8504,5257
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 345,5447,3099,7097,23163,55270
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 91647,1019,2247,81704,2904,2200
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 406934,445,80207,23409,406922,90624
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 509,2788,3373,567,2878,5313
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 51441,2785,84342,5189,3073,64788
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 8813,1508,7388,5473,585,51422
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5590,6439,654,51024,1374,7157
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5595,4720,655,1815,558,518
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 10379,1409,54802,63931,283120,91869
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1859,133396,3356,3483,2805,91452
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 29078,2593,111240474,9572,4715,5581
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 197131,5970,3030,8642,23516,54805
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 208,2835,5442,4159,3784,79949
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 538,407007,7019,2100,632,85365
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 268,347,5257,6403,6351,116228
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1634,4915,644974,100506742,2247,1363
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 84701,152078,51458,8877,8945,6342
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3552,941,137994,210,3684,729238
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1514,51144,54931,9095,54210,15
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 10352,5364,1557,1442,79087,80267
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 729238,8473,285848,2888,100,7879
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5191,33,2778,665,100,1436
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 123099,2539,57176,6236,1585,6582
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 29968,212,1649,7078,389,3159
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5160,3569,1369,5971,685,353500
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 801,728294,2786,3115,388753,57128
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 338821,7297,6748,3791,549,1595
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5193,151,3759,4842,4000,517
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 7157,5167,7025,2683,7384,929
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 23654,5723,55486,3980,7036,3091
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 694,2303,5329,2647,65985,9095
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 7528,51119,640,3978,100131801,4654
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6721,4709,241,23409,1029,26088
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 7084,6342,4668,10560,51660,496
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 9927,5442,152926,2690,4925,3779
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 284184,3123,8202,488,156,1968
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3779,2170,5096,3712,104909134,3091
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 10383,27249,4000,8945,1950,5588
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 158,54549,10008,1499,54896,654
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5828,231,10845,6383,10616,1200
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5465,101180976,4853,2109,2200,10229
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 10466,427,9672,142,3290,133522
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 34,10466,5740,6789,54805,2799
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 345,5350,5321,3117,275,8660
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 84061,1593,197322,650,3123,79144
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 10020,7942,1491,1345,1589,55788
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 216,2890,5592,80224,5270,6341
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 104,2244,885,1185,549,942
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6925,3074,5255,51181,3054,57511
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3483,1716,29929,55343,3159,376497
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 116085,650,1230,5291,2334,3813
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 471,629,2628,5515,29078,54809
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 7099,2108,54902,4040,64601,7297
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 53632,10724,2395,7124,8803,123283
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 51094,114548,664,56999,4337,133396
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2731,54658,1270,5080,388372,5213
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6319,6324,3329,4709,125988,2949
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 56922,175,2641,130120,5293,10682
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 7026,5195,91942,642489,6464,104
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 148979,5713,51117,10382,7220,29960
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6897,6515,2792,1650,351,5501
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4128,463,5228,1355,9630,2099
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 8604,5277,10423,54896,84300,1369
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 7287,7252,3309,6342,53345,492
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1801,1348,463,84274,4704,10
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 56848,389692,2119,5588,54675,80347
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4594,18,3709,7352,2169,1347
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 154,445,2247,330,2328,6834
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2597,29843,84987,10195,7466,2517
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6720,80331,1019,8473,123283,1641
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5068,155,2934,858,4594,5970
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 7026,9377,1716,406937,55526,116085
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3559,3309,7157,5972,3692,8642
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6354,55526,151306,407010,7389,2787
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5364,51119,1401,4357,6476,3700
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5468,6715,1491,23556,22978,4942
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 384,819,563,11255,2908,406991
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6261,205327,407004,409,57678,55186
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4855,22933,9927,3658,2683,5971
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3930,594,5792,9526,1906,1786
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 7389,537,54600,407006,2052,64601
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 7372,51083,3033,152926,23291,54106
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 51083,51604,160287,55753,64801,2348
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5972,6556,30061,241,3643,85476
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3382,796,4854,134,406947,364
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 26291,1558,79944,3576,55768,364
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 154,55503,779,56922,5950,3284
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3291,23038,387082,1514,3954,6928
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 54915,5625,718,7351,84557,51548
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2936,2784,406937,5078,29926,26191
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3062,64788,51422,26119,407006,3483
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 11213,7056,51079,2947,1815,1716
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 80207,4311,50674,2516,5054,11231
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 80270,123,2157,582,80347,10682
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1268,5723,212,2678,3440,1594
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 859,2806,51021,8471,201305,7040
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 54344,147007,1537,7026,388753,56606
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3375,4722,4694,9663,266,819
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5365,101180976,2034,2582,1340,1509
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 23274,283459,79944,91949,2582,7225
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5096,203068,496,7494,3507,55331
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 64919,23389,2170,29929,665,2864
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 51604,231,1348,7319,1027,291
--> return NULL...
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 4 ]
>
> proc.time()
user system elapsed
71.34 2.06 73.81
SVMDO.Rcheck/SVMDO-Ex.timings
| name | user | system | elapsed | |
| runGUI | 0.69 | 0.08 | 1.42 | |