Back to Long Tests report for BioC 3.20

This page was generated on 2024-09-07 23:55 -0400 (Sat, 07 Sep 2024).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 22.04.3 LTS)x86_644.4.1 (2024-06-14) -- "Race for Your Life" 4711
palomino8Windows Server 2022 Datacenterx644.4.1 (2024-06-14 ucrt) -- "Race for Your Life" 4448
lconwaymacOS 12.7.1 Montereyx86_644.4.1 (2024-06-14) -- "Race for Your Life" 4481
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 10/32HostnameOS / ArchCHECK
biodbNcbi 1.9.0  (landing page)
Pierrick Roger
Snapshot Date: 2024-09-07 09:55 -0400 (Sat, 07 Sep 2024)
git_url: https://git.bioconductor.org/packages/biodbNcbi
git_branch: devel
git_last_commit: 347e93f
git_last_commit_date: 2024-04-30 11:41:09 -0400 (Tue, 30 Apr 2024)
nebbiolo2Linux (Ubuntu 22.04.3 LTS) / x86_64  ERROR  
palomino8Windows Server 2022 Datacenter / x64  WARNINGS  
lconwaymacOS 12.7.1 Monterey / x86_64  WARNINGS  

CHECK results for biodbNcbi on lconway

To the developers/maintainers of the biodbNcbi package:
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: biodbNcbi
Version: 1.9.0
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD check --test-dir=longtests --no-stop-on-test-error --no-codoc --no-examples --no-manual --ignore-vignettes --check-subdirs=no biodbNcbi_1.9.0.tar.gz
StartedAt: 2024-09-07 16:01:59 -0400 (Sat, 07 Sep 2024)
EndedAt: 2024-09-07 16:03:50 -0400 (Sat, 07 Sep 2024)
EllapsedTime: 111.7 seconds
RetCode: 0
Status:   WARNINGS  
CheckDir: biodbNcbi.Rcheck
Warnings: 1

Tests output

biodbNcbi.Rcheck/tests/testthat.Rout


R version 4.4.1 (2024-06-14) -- "Race for Your Life"
Copyright (C) 2024 The R Foundation for Statistical Computing
Platform: x86_64-apple-darwin20

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Type 'license()' or 'licence()' for distribution details.

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Type 'contributors()' for more information and
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> # Script needed to run testthat automatically from ‘R CMD check’. See
> # testthat::test_dir documentation.
> library(testthat)
> library(biodbNci)
> Sys.setenv(TESTTHAT_REPORTER="summary")
> Sys.setenv(BIODB_LOG_DST="console")
> test_check("biodbNcbi")
Loading required package: biodbNcbi
biodb.INFO [2024-09-07 16:02:37.837][biodb::testContext]
biodb.INFO [2024-09-07 16:02:37.839][biodb::testContext] ********************************************************************************
biodb.INFO [2024-09-07 16:02:37.840][biodb::testContext] Test context - CCDS long tests
biodb.INFO [2024-09-07 16:02:37.841][biodb::testContext] ********************************************************************************
biodb.INFO [2024-09-07 16:02:37.842][biodb::testContext]
biodb.INFO [2024-09-07 16:02:37.847][private$loadBiodbPkgsDefinitions] Loading definitions from package biodb version 1.13.0.
biodb.DEBUG[2024-09-07 16:02:37.848][self$loadDefinitions] Load definitions from file "/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/biodb/definitions.yml".
biodb.DEBUG[2024-09-07 16:02:37.854][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-09-07 16:02:37.855][self$getConfig()$define] Define config key allow.huge.downloads.
biodb.DEBUG[2024-09-07 16:02:37.856][self$set] Set key allow.huge.downloads to TRUE.
biodb.DEBUG[2024-09-07 16:02:37.856][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-09-07 16:02:37.857][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:02:37.858][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:02:37.858][self$getConfig()$define] Define config key autoload.extra.pkgs.
biodb.DEBUG[2024-09-07 16:02:37.871][self$set] Set key autoload.extra.pkgs to TRUE.
biodb.DEBUG[2024-09-07 16:02:37.872][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-09-07 16:02:37.872][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:02:37.873][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:02:37.874][self$getConfig()$define] Define config key cache.all.requests.
biodb.DEBUG[2024-09-07 16:02:37.874][self$set] Set key cache.all.requests to TRUE.
biodb.DEBUG[2024-09-07 16:02:37.875][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-09-07 16:02:37.876][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:02:37.876][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:02:37.877][self$getConfig()$define] Define config key cache.directory.
biodb.DEBUG[2024-09-07 16:02:37.878][self$getConfig()$define] Define config key cache.read.only.
biodb.DEBUG[2024-09-07 16:02:37.878][self$set] Set key cache.read.only to FALSE.
biodb.DEBUG[2024-09-07 16:02:37.879][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-09-07 16:02:37.880][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:02:37.880][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:02:37.881][self$getConfig()$define] Define config key cache.subfolders.
biodb.DEBUG[2024-09-07 16:02:37.882][self$getConfig()$define] Define config key cache.system.
biodb.DEBUG[2024-09-07 16:02:37.882][self$set] Set key cache.system to TRUE.
biodb.DEBUG[2024-09-07 16:02:37.883][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-09-07 16:02:37.884][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:02:37.884][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:02:37.885][self$getConfig()$define] Define config key use.cache.for.local.db.
biodb.DEBUG[2024-09-07 16:02:37.886][self$set] Set key use.cache.for.local.db to FALSE.
biodb.DEBUG[2024-09-07 16:02:37.887][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-09-07 16:02:37.887][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:02:37.888][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:02:37.889][self$getConfig()$define] Define config key dwnld.chunk.size.
biodb.DEBUG[2024-09-07 16:02:37.889][self$getConfig()$define] Define config key dwnld.timeout.
biodb.DEBUG[2024-09-07 16:02:37.890][self$set] Set key dwnld.timeout to 3600.
biodb.DEBUG[2024-09-07 16:02:37.891][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-09-07 16:02:37.891][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:02:37.892][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:02:37.893][self$getConfig()$define] Define config key compute.fields.
biodb.DEBUG[2024-09-07 16:02:37.894][self$set] Set key compute.fields to TRUE.
biodb.DEBUG[2024-09-07 16:02:37.894][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-09-07 16:02:37.895][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:02:37.896][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:02:37.896][self$getConfig()$define] Define config key factory.cache.
biodb.DEBUG[2024-09-07 16:02:37.897][self$getConfig()$define] Define config key force.locale.
biodb.DEBUG[2024-09-07 16:02:37.898][self$set] Set key force.locale to TRUE.
biodb.DEBUG[2024-09-07 16:02:37.898][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-09-07 16:02:37.899][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:02:37.900][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:02:37.900][self$getConfig()$define] Define config key longterm.cache.subfolder.
biodb.DEBUG[2024-09-07 16:02:37.901][self$getConfig()$define] Define config key msg.caution.lvl.
biodb.DEBUG[2024-09-07 16:02:37.902][self$getConfig()$define] Define config key msg.debug.lvl.
biodb.DEBUG[2024-09-07 16:02:37.902][self$getConfig()$define] Define config key msg.info.lvl.
biodb.DEBUG[2024-09-07 16:02:37.903][self$getConfig()$define] Define config key multival.field.sep.
biodb.DEBUG[2024-09-07 16:02:37.904][self$set] Set key multival.field.sep to ";".
biodb.DEBUG[2024-09-07 16:02:37.905][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-09-07 16:02:37.905][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:02:37.906][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:02:37.907][self$getConfig()$define] Define config key intra.field.name.sep.
biodb.DEBUG[2024-09-07 16:02:37.907][self$set] Set key intra.field.name.sep to ".".
biodb.DEBUG[2024-09-07 16:02:37.908][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-09-07 16:02:37.909][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:02:37.909][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:02:37.910][self$getConfig()$define] Define config key entries.sep.
biodb.DEBUG[2024-09-07 16:02:37.911][self$set] Set key entries.sep to "|".
biodb.DEBUG[2024-09-07 16:02:37.911][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-09-07 16:02:37.912][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:02:37.913][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:02:37.913][self$getConfig()$define] Define config key offline.
biodb.DEBUG[2024-09-07 16:02:37.914][self$set] Set key offline to FALSE.
biodb.DEBUG[2024-09-07 16:02:37.915][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-09-07 16:02:37.915][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:02:37.916][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:02:37.917][self$getConfig()$define] Define config key persistent.cache.impl.
biodb.DEBUG[2024-09-07 16:02:37.917][self$set] Set key persistent.cache.impl to "custom".
biodb.DEBUG[2024-09-07 16:02:37.918][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-09-07 16:02:37.919][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:02:37.919][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:02:37.920][self$getConfig()$define] Define config key proton.mass.
biodb.DEBUG[2024-09-07 16:02:37.921][self$set] Set key proton.mass to 1.0072765.
biodb.DEBUG[2024-09-07 16:02:37.921][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-09-07 16:02:37.922][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:02:37.923][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:02:37.923][self$getConfig()$define] Define config key shortterm.cache.subfolder.
biodb.DEBUG[2024-09-07 16:02:37.924][self$getConfig()$define] Define config key svn.binary.path.
biodb.DEBUG[2024-09-07 16:02:37.939][self$set] Set key svn.binary.path to "".
biodb.DEBUG[2024-09-07 16:02:37.940][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-09-07 16:02:37.941][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:02:37.941][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:02:37.942][self$getConfig()$define] Define config key test.functions.
biodb.DEBUG[2024-09-07 16:02:37.943][self$getConfig()$define] Define config key useragent.
biodb.DEBUG[2024-09-07 16:02:37.944][self$set] Set key useragent to "R Bioconductor biodb library.".
biodb.DEBUG[2024-09-07 16:02:37.944][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-09-07 16:02:37.945][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:02:37.946][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:02:37.948][self$getDbsInfo()$define] Define connector comp.csv.file.
biodb.DEBUG[2024-09-07 16:02:37.977][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-09-07 16:02:37.988][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields.".
biodb.DEBUG[2024-09-07 16:02:37.989][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-09-07 16:02:37.990][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-09-07 16:02:37.990][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-09-07 16:02:37.991][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-09-07 16:02:37.992][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-09-07 16:02:37.993][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-09-07 16:02:37.994][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2024-09-07 16:02:37.995][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-09-07 16:02:37.995][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-09-07 16:02:37.996][self$setPropertyValue] Setting property "name" to "Compound CSV File".
biodb.DEBUG[2024-09-07 16:02:37.997][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-09-07 16:02:37.997][self$setPropertyValue]
biodb.DEBUG[2024-09-07 16:02:37.998][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-09-07 16:02:37.999][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-09-07 16:02:37.999][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2024-09-07 16:02:37.999][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2024-09-07 16:02:37.999][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2024-09-07 16:02:37.999][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2024-09-07 16:02:38.000][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-09-07 16:02:38.000][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-09-07 16:02:38.001][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-09-07 16:02:38.002][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-09-07 16:02:38.002][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-09-07 16:02:38.003][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-09-07 16:02:38.004][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-09-07 16:02:38.005][self$setPropertyValue]
biodb.DEBUG[2024-09-07 16:02:38.005][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-09-07 16:02:38.006][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-09-07 16:02:38.007][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-09-07 16:02:38.007][self$setPropertyValue]
biodb.DEBUG[2024-09-07 16:02:38.008][self$getDbsInfo()$define] Define connector comp.sqlite.
biodb.DEBUG[2024-09-07 16:02:38.009][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-09-07 16:02:38.010][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside an SQLite file.".
biodb.DEBUG[2024-09-07 16:02:38.011][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-09-07 16:02:38.012][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-09-07 16:02:38.012][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-09-07 16:02:38.013][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-09-07 16:02:38.014][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-09-07 16:02:38.014][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-09-07 16:02:38.015][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2024-09-07 16:02:38.016][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-09-07 16:02:38.016][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-09-07 16:02:38.017][self$setPropertyValue] Setting property "name" to "Compound SQLite".
biodb.DEBUG[2024-09-07 16:02:38.018][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-09-07 16:02:38.019][self$setPropertyValue]
biodb.DEBUG[2024-09-07 16:02:38.019][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-09-07 16:02:38.020][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-09-07 16:02:38.020][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2024-09-07 16:02:38.020][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2024-09-07 16:02:38.020][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2024-09-07 16:02:38.020][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2024-09-07 16:02:38.021][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-09-07 16:02:38.021][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-09-07 16:02:38.022][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-09-07 16:02:38.023][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-09-07 16:02:38.023][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-09-07 16:02:38.024][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-09-07 16:02:38.025][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-09-07 16:02:38.025][self$setPropertyValue]
biodb.DEBUG[2024-09-07 16:02:38.026][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-09-07 16:02:38.027][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-09-07 16:02:38.027][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-09-07 16:02:38.028][self$setPropertyValue]
biodb.DEBUG[2024-09-07 16:02:38.029][self$getDbsInfo()$define] Define connector mass.csv.file.
biodb.DEBUG[2024-09-07 16:02:38.030][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-09-07 16:02:38.031][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields..".
biodb.DEBUG[2024-09-07 16:02:38.032][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-09-07 16:02:38.033][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-09-07 16:02:38.033][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-09-07 16:02:38.034][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-09-07 16:02:38.035][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-09-07 16:02:38.035][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-09-07 16:02:38.036][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2024-09-07 16:02:38.037][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-09-07 16:02:38.038][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2024-09-07 16:02:38.038][self$setPropertyValue] Setting property "name" to "Mass spectra CSV File".
biodb.DEBUG[2024-09-07 16:02:38.039][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-09-07 16:02:38.040][self$setPropertyValue]
biodb.DEBUG[2024-09-07 16:02:38.040][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-09-07 16:02:38.041][self$setPropertyValue]
biodb.DEBUG[2024-09-07 16:02:38.042][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-09-07 16:02:38.043][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-09-07 16:02:38.043][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-09-07 16:02:38.044][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-09-07 16:02:38.045][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-09-07 16:02:38.045][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-09-07 16:02:38.046][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-09-07 16:02:38.047][self$setPropertyValue]
biodb.DEBUG[2024-09-07 16:02:38.047][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-09-07 16:02:38.048][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-09-07 16:02:38.049][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-09-07 16:02:38.049][self$setPropertyValue]
biodb.DEBUG[2024-09-07 16:02:38.050][self$getDbsInfo()$define] Define connector mass.sqlite.
biodb.DEBUG[2024-09-07 16:02:38.052][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-09-07 16:02:38.052][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside an SQLite file.".
biodb.DEBUG[2024-09-07 16:02:38.053][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-09-07 16:02:38.054][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-09-07 16:02:38.054][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-09-07 16:02:38.055][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-09-07 16:02:38.056][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-09-07 16:02:38.057][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-09-07 16:02:38.057][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2024-09-07 16:02:38.058][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-09-07 16:02:38.059][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2024-09-07 16:02:38.059][self$setPropertyValue] Setting property "name" to "Mass spectra SQLite".
biodb.DEBUG[2024-09-07 16:02:38.060][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-09-07 16:02:38.061][self$setPropertyValue]
biodb.DEBUG[2024-09-07 16:02:38.062][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-09-07 16:02:38.062][self$setPropertyValue]
biodb.DEBUG[2024-09-07 16:02:38.063][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-09-07 16:02:38.064][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-09-07 16:02:38.064][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-09-07 16:02:38.065][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-09-07 16:02:38.066][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-09-07 16:02:38.066][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-09-07 16:02:38.067][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-09-07 16:02:38.068][self$setPropertyValue]
biodb.DEBUG[2024-09-07 16:02:38.068][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-09-07 16:02:38.069][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-09-07 16:02:38.070][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-09-07 16:02:38.071][self$setPropertyValue]
biodb.DEBUG[2024-09-07 16:02:38.073][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-09-07 16:02:38.074][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:02:38.075][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:02:38.075][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-09-07 16:02:38.076][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:02:38.076][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:02:38.077][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:02:38.078][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:02:38.078][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-09-07 16:02:38.079][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:02:38.080][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:02:38.080][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:02:38.081][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:02:38.082][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-09-07 16:02:38.082][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:02:38.083][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:02:38.083][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:02:38.084][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:02:38.085][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-09-07 16:02:38.085][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:02:38.086][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:02:38.087][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:02:38.087][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:02:38.088][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-09-07 16:02:38.089][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:02:38.089][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:02:38.090][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:02:38.091][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:02:38.091][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-09-07 16:02:38.092][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:02:38.092][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:02:38.093][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:02:38.094][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:02:38.094][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-09-07 16:02:38.095][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:02:38.096][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:02:38.096][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:02:38.097][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:02:38.098][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-09-07 16:02:38.098][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:02:38.099][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:02:38.099][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:02:38.100][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:02:38.101][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-09-07 16:02:38.101][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:02:38.102][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:02:38.103][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:02:38.107][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:02:38.108][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-09-07 16:02:38.108][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:02:38.109][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:02:38.110][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:02:38.110][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:02:38.111][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-09-07 16:02:38.112][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:02:38.112][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:02:38.113][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:02:38.114][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:02:38.114][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-09-07 16:02:38.115][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:02:38.116][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:02:38.116][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:02:38.117][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:02:38.117][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-09-07 16:02:38.118][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:02:38.119][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:02:38.119][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:02:38.120][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:02:38.120][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-09-07 16:02:38.121][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:02:38.122][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:02:38.122][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:02:38.123][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:02:38.124][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-09-07 16:02:38.124][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:02:38.125][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:02:38.126][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:02:38.126][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:02:38.127][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-09-07 16:02:38.128][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:02:38.128][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:02:38.129][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:02:38.130][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:02:38.130][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-09-07 16:02:38.131][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:02:38.132][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:02:38.132][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:02:38.133][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:02:38.134][self$getEntryFields()$define] Define field accession.
biodb.DEBUG[2024-09-07 16:02:38.137][self$getEntryFields()$define] Define field description.
biodb.DEBUG[2024-09-07 16:02:38.138][self$getEntryFields()$define] Define field name.
biodb.DEBUG[2024-09-07 16:02:38.139][self$getEntryFields()$define] Define field cas.id.
biodb.DEBUG[2024-09-07 16:02:38.140][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2024-09-07 16:02:38.141][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2024-09-07 16:02:38.142][self$getEntryFields()$define] Define field comp.csv.file.id.
biodb.DEBUG[2024-09-07 16:02:38.143][self$getEntryFields()$define] Define field comp.sqlite.id.
biodb.DEBUG[2024-09-07 16:02:38.144][self$getEntryFields()$define] Define field expasy.enzyme.id.
biodb.DEBUG[2024-09-07 16:02:38.145][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2024-09-07 16:02:38.146][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2024-09-07 16:02:38.147][self$getEntryFields()$define] Define field kegg.genes.id.
biodb.DEBUG[2024-09-07 16:02:38.148][self$getEntryFields()$define] Define field mass.csv.file.id.
biodb.DEBUG[2024-09-07 16:02:38.149][self$getEntryFields()$define] Define field mass.sqlite.id.
biodb.DEBUG[2024-09-07 16:02:38.150][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2024-09-07 16:02:38.151][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2024-09-07 16:02:38.152][self$getEntryFields()$define] Define field compound.id.
biodb.DEBUG[2024-09-07 16:02:38.153][self$getEntryFields()$define] Define field average.mass.
biodb.DEBUG[2024-09-07 16:02:38.154][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2024-09-07 16:02:38.155][self$getEntryFields()$define] Define field monoisotopic.mass.
biodb.DEBUG[2024-09-07 16:02:38.156][self$getEntryFields()$define] Define field nominal.mass.
biodb.DEBUG[2024-09-07 16:02:38.157][self$getEntryFields()$define] Define field peak.attr.
biodb.DEBUG[2024-09-07 16:02:38.158][self$getEntryFields()$define] Define field peak.comp.
biodb.DEBUG[2024-09-07 16:02:38.159][self$getEntryFields()$define] Define field peak.error.ppm.
biodb.DEBUG[2024-09-07 16:02:38.160][self$getEntryFields()$define] Define field peak.formula.
biodb.DEBUG[2024-09-07 16:02:38.161][self$getEntryFields()$define] Define field peak.intensity.
biodb.DEBUG[2024-09-07 16:02:38.162][self$getEntryFields()$define] Define field peak.mass.
biodb.DEBUG[2024-09-07 16:02:38.163][self$getEntryFields()$define] Define field peak.mztheo.
biodb.DEBUG[2024-09-07 16:02:38.164][self$getEntryFields()$define] Define field peak.mzexp.
biodb.DEBUG[2024-09-07 16:02:38.165][self$getEntryFields()$define] Define field peak.mz.
biodb.DEBUG[2024-09-07 16:02:38.166][self$getEntryFields()$define] Define field peak.relative.intensity.
biodb.DEBUG[2024-09-07 16:02:38.167][self$getEntryFields()$define] Define field peaks.
biodb.DEBUG[2024-09-07 16:02:38.168][self$getEntryFields()$define] Define field chrom.col.constructor.
biodb.DEBUG[2024-09-07 16:02:38.169][self$getEntryFields()$define] Define field chrom.col.diameter.
biodb.DEBUG[2024-09-07 16:02:38.170][self$getEntryFields()$define] Define field chrom.col.id.
biodb.DEBUG[2024-09-07 16:02:38.171][self$getEntryFields()$define] Define field chrom.col.length.
biodb.DEBUG[2024-09-07 16:02:38.172][self$getEntryFields()$define] Define field chrom.col.method.protocol.
biodb.DEBUG[2024-09-07 16:02:38.173][self$getEntryFields()$define] Define field chrom.col.name.
biodb.DEBUG[2024-09-07 16:02:38.174][self$getEntryFields()$define] Define field chrom.flow.gradient.
biodb.DEBUG[2024-09-07 16:02:38.174][self$getEntryFields()$define] Define field chrom.flow.rate.
biodb.DEBUG[2024-09-07 16:02:38.176][self$getEntryFields()$define] Define field chrom.rt.
biodb.DEBUG[2024-09-07 16:02:38.177][self$getEntryFields()$define] Define field chrom.rt.max.
biodb.DEBUG[2024-09-07 16:02:38.178][self$getEntryFields()$define] Define field chrom.rt.min.
biodb.DEBUG[2024-09-07 16:02:38.179][self$getEntryFields()$define] Define field chrom.rt.unit.
biodb.DEBUG[2024-09-07 16:02:38.180][self$getEntryFields()$define] Define field chrom.solvent.
biodb.DEBUG[2024-09-07 16:02:38.181][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2024-09-07 16:02:38.182][self$getEntryFields()$define] Define field aa.seq.length.
biodb.DEBUG[2024-09-07 16:02:38.183][self$getEntryFields()$define] Define field aa.seq.location.
biodb.DEBUG[2024-09-07 16:02:38.183][self$getEntryFields()$define] Define field nt.seq.
biodb.DEBUG[2024-09-07 16:02:38.184][self$getEntryFields()$define] Define field nt.seq.length.
biodb.DEBUG[2024-09-07 16:02:38.185][self$getEntryFields()$define] Define field ec.
biodb.DEBUG[2024-09-07 16:02:38.186][self$getEntryFields()$define] Define field organism.
biodb.DEBUG[2024-09-07 16:02:38.187][self$getEntryFields()$define] Define field pathway.class.
biodb.DEBUG[2024-09-07 16:02:38.188][self$getEntryFields()$define] Define field catalytic.activity.
biodb.DEBUG[2024-09-07 16:02:38.190][self$getEntryFields()$define] Define field cofactor.
biodb.DEBUG[2024-09-07 16:02:38.190][self$getEntryFields()$define] Define field gene.symbol.
biodb.DEBUG[2024-09-07 16:02:38.191][self$getEntryFields()$define] Define field charge.
biodb.DEBUG[2024-09-07 16:02:38.192][self$getEntryFields()$define] Define field comp.iupac.name.allowed.
biodb.DEBUG[2024-09-07 16:02:38.193][self$getEntryFields()$define] Define field comp.iupac.name.cas.
biodb.DEBUG[2024-09-07 16:02:38.194][self$getEntryFields()$define] Define field comp.iupac.name.pref.
biodb.DEBUG[2024-09-07 16:02:38.195][self$getEntryFields()$define] Define field comp.iupac.name.syst.
biodb.DEBUG[2024-09-07 16:02:38.196][self$getEntryFields()$define] Define field comp.iupac.name.trad.
biodb.DEBUG[2024-09-07 16:02:38.197][self$getEntryFields()$define] Define field comp.super.class.
biodb.DEBUG[2024-09-07 16:02:38.198][self$getEntryFields()$define] Define field equation.
biodb.DEBUG[2024-09-07 16:02:38.199][self$getEntryFields()$define] Define field formula.
biodb.DEBUG[2024-09-07 16:02:38.200][self$getEntryFields()$define] Define field composition.
biodb.DEBUG[2024-09-07 16:02:38.201][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2024-09-07 16:02:38.202][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2024-09-07 16:02:38.203][self$getEntryFields()$define] Define field logp.
biodb.DEBUG[2024-09-07 16:02:38.204][self$getEntryFields()$define] Define field ms.level.
biodb.DEBUG[2024-09-07 16:02:38.205][self$getEntryFields()$define] Define field ms.mode.
biodb.DEBUG[2024-09-07 16:02:38.206][self$getEntryFields()$define] Define field msdev.
biodb.DEBUG[2024-09-07 16:02:38.207][self$getEntryFields()$define] Define field msdevtype.
biodb.DEBUG[2024-09-07 16:02:38.208][self$getEntryFields()$define] Define field msprecannot.
biodb.DEBUG[2024-09-07 16:02:38.209][self$getEntryFields()$define] Define field msprecmz.
biodb.DEBUG[2024-09-07 16:02:38.210][self$getEntryFields()$define] Define field mstype.
biodb.DEBUG[2024-09-07 16:02:38.211][self$getEntryFields()$define] Define field nb.compounds.
biodb.DEBUG[2024-09-07 16:02:38.212][self$getEntryFields()$define] Define field nb.peaks.
biodb.DEBUG[2024-09-07 16:02:38.213][self$getEntryFields()$define] Define field products.
biodb.DEBUG[2024-09-07 16:02:38.214][self$getEntryFields()$define] Define field smiles.
biodb.DEBUG[2024-09-07 16:02:38.215][self$getEntryFields()$define] Define field smiles.canonical.
biodb.DEBUG[2024-09-07 16:02:38.216][self$getEntryFields()$define] Define field smiles.isomeric.
biodb.DEBUG[2024-09-07 16:02:38.217][self$getEntryFields()$define] Define field substrates.
biodb.DEBUG[2024-09-07 16:02:38.221][initialize] Created successfully new BiodbMain instance.
biodb.DEBUG[2024-09-07 16:02:38.222][initialize] This is biodb version 1.13.0.
biodb.DEBUG[2024-09-07 16:02:38.224][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-09-07 16:02:38.225][FUN] Trying to call function notifyNewObservers on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:02:38.226][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:02:38.226][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:02:38.227][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:02:38.230][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-09-07 16:02:38.231][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:02:38.232][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:02:38.232][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:02:38.233][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:02:38.234][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:02:38.239][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:02:38.239][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-09-07 16:02:38.240][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:02:38.241][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:02:38.241][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:02:38.242][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:02:38.243][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:02:38.243][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:02:38.244][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-09-07 16:02:38.245][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:02:38.245][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:02:38.246][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:02:38.247][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:02:38.247][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:02:38.248][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:02:38.249][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-09-07 16:02:38.249][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:02:38.250][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:02:38.251][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:02:38.251][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:02:38.252][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:02:38.253][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:02:38.253][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-09-07 16:02:38.254][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:02:38.255][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:02:38.255][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:02:38.256][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:02:38.256][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:02:38.257][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:02:38.258][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-09-07 16:02:38.258][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:02:38.259][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:02:38.259][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:02:38.260][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:02:38.261][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:02:38.261][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:02:38.262][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-09-07 16:02:38.263][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:02:38.263][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:02:38.264][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:02:38.265][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:02:38.265][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:02:38.266][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:02:38.267][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-09-07 16:02:38.267][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:02:38.268][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:02:38.269][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:02:38.269][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:02:38.270][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:02:38.270][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:02:38.271][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-09-07 16:02:38.272][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:02:38.272][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:02:38.273][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:02:38.274][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:02:38.274][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:02:38.275][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:02:38.275][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-09-07 16:02:38.276][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:02:38.277][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:02:38.277][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:02:38.278][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:02:38.279][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:02:38.279][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:02:38.280][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-09-07 16:02:38.281][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:02:38.281][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:02:38.282][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:02:38.283][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:02:38.283][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:02:38.284][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:02:38.285][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-09-07 16:02:38.285][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:02:38.286][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:02:38.287][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:02:38.287][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:02:38.288][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:02:38.289][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:02:38.289][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-09-07 16:02:38.290][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:02:38.290][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:02:38.291][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:02:38.292][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:02:38.292][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:02:38.293][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:02:38.294][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-09-07 16:02:38.294][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:02:38.295][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:02:38.296][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:02:38.296][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:02:38.297][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:02:38.297][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:02:38.298][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-09-07 16:02:38.299][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:02:38.299][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:02:38.300][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:02:38.301][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:02:38.301][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:02:38.302][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:02:38.303][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-09-07 16:02:38.303][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:02:38.304][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:02:38.305][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:02:38.305][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:02:38.306][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:02:38.306][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:02:38.307][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-09-07 16:02:38.308][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:02:38.308][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:02:38.309][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:02:38.310][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:02:38.310][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:02:38.311][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:02:38.313][bdb$loadDefinitions] Load definitions from file "/Users/biocbuild/bbs-3.20-bioc-longtests/meat/biodbNcbi.Rcheck/biodbNcbi/definitions.yml".
biodb.DEBUG[2024-09-07 16:02:38.320][self$getDbsInfo()$define] Define connector ncbi.ccds.
biodb.DEBUG[2024-09-07 16:02:38.322][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-09-07 16:02:38.323][self$setPropertyValue] Setting property "description" to "NCBI CCDS database.".
biodb.DEBUG[2024-09-07 16:02:38.323][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-09-07 16:02:38.324][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-09-07 16:02:38.325][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-09-07 16:02:38.325][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-09-07 16:02:38.326][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2024-09-07 16:02:38.327][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-09-07 16:02:38.328][self$setPropertyValue] Setting property "entry.content.type" to "html".
biodb.DEBUG[2024-09-07 16:02:38.329][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-09-07 16:02:38.329][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-09-07 16:02:38.330][self$setPropertyValue] Setting property "name" to "NCBI CCDS".
biodb.DEBUG[2024-09-07 16:02:38.331][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-09-07 16:02:38.332][self$setPropertyValue] Setting property "parsing.expr" to "list(attr = "value", path = "//input[@id='DATA']")".
biodb.DEBUG[2024-09-07 16:02:38.332][self$setPropertyValue] Setting property "parsing.expr" to "//b[starts-with(.,'Nucleotide Sequence')]/../tt".
biodb.DEBUG[2024-09-07 16:02:38.332][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2024-09-07 16:02:38.333][self$setPropertyValue]
biodb.DEBUG[2024-09-07 16:02:38.334][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2024-09-07 16:02:38.334][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-09-07 16:02:38.335][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-09-07 16:02:38.336][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-09-07 16:02:38.336][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-09-07 16:02:38.337][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-09-07 16:02:38.338][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-09-07 16:02:38.338][self$setPropertyValue] Setting property "urls" to "https://www.ncbi.nlm.nih.gov/CCDS/".
biodb.DEBUG[2024-09-07 16:02:38.338][self$setPropertyValue] Setting property "urls" to "https://eutils.ncbi.nlm.nih.gov/entrez/eutils".
biodb.DEBUG[2024-09-07 16:02:38.339][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-09-07 16:02:38.340][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-09-07 16:02:38.340][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2024-09-07 16:02:38.341][self$setPropertyValue]
biodb.DEBUG[2024-09-07 16:02:38.342][self$getDbsInfo()$define] Define connector ncbi.gene.
biodb.DEBUG[2024-09-07 16:02:38.343][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-09-07 16:02:38.344][self$setPropertyValue] Setting property "description" to "NCBI Gene database.".
biodb.DEBUG[2024-09-07 16:02:38.345][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-09-07 16:02:38.346][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-09-07 16:02:38.346][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-09-07 16:02:38.347][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-09-07 16:02:38.348][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2024-09-07 16:02:38.349][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-09-07 16:02:38.349][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2024-09-07 16:02:38.350][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-09-07 16:02:38.351][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-09-07 16:02:38.351][self$setPropertyValue] Setting property "name" to "NCBI Gene".
biodb.DEBUG[2024-09-07 16:02:38.352][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-09-07 16:02:38.353][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-track_geneid".
biodb.DEBUG[2024-09-07 16:02:38.353][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-ref_desc".
biodb.DEBUG[2024-09-07 16:02:38.353][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-ref_maploc".
biodb.DEBUG[2024-09-07 16:02:38.353][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-ref_locus".
biodb.DEBUG[2024-09-07 16:02:38.353][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-ref_syn_E".
biodb.DEBUG[2024-09-07 16:02:38.353][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-commentary_heading[text()='UniProtKB']/..//Dbtag_db[text()='UniProtKB/Swiss-Prot']/..//Object-id_str".
biodb.DEBUG[2024-09-07 16:02:38.354][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2024-09-07 16:02:38.354][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-09-07 16:02:38.355][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2024-09-07 16:02:38.356][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-09-07 16:02:38.357][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-09-07 16:02:38.357][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-09-07 16:02:38.358][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-09-07 16:02:38.359][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-09-07 16:02:38.359][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-09-07 16:02:38.360][self$setPropertyValue] Setting property "urls" to "https://www.ncbi.nlm.nih.gov/".
biodb.DEBUG[2024-09-07 16:02:38.360][self$setPropertyValue] Setting property "urls" to "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/".
biodb.DEBUG[2024-09-07 16:02:38.361][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-09-07 16:02:38.362][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-09-07 16:02:38.362][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2024-09-07 16:02:38.363][self$setPropertyValue]
biodb.DEBUG[2024-09-07 16:02:38.364][self$getDbsInfo()$define] Define connector ncbi.pubchem.comp.
biodb.DEBUG[2024-09-07 16:02:38.365][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-09-07 16:02:38.386][self$setPropertyValue] Setting property "description" to "PubChem Compound database.".
biodb.DEBUG[2024-09-07 16:02:38.387][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-09-07 16:02:38.388][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-09-07 16:02:38.388][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-09-07 16:02:38.389][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-09-07 16:02:38.390][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2024-09-07 16:02:38.390][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-09-07 16:02:38.391][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2024-09-07 16:02:38.392][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-09-07 16:02:38.393][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-09-07 16:02:38.393][self$setPropertyValue] Setting property "name" to "PubChem Compound".
biodb.DEBUG[2024-09-07 16:02:38.394][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-09-07 16:02:38.395][self$setPropertyValue] Setting property "parsing.expr" to "//PC-CompoundType_id_cid".
biodb.DEBUG[2024-09-07 16:02:38.395][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='IUPAC Name']/../PC-Urn_name[text()='Allowed']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-09-07 16:02:38.395][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='IUPAC Name']/../PC-Urn_name[text()='CAS-like Style']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-09-07 16:02:38.395][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='IUPAC Name']/../PC-Urn_name[text()='Preferred']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-09-07 16:02:38.395][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='IUPAC Name']/../PC-Urn_name[text()='Systematic']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-09-07 16:02:38.395][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='IUPAC Name']/../PC-Urn_name[text()='Traditional']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-09-07 16:02:38.395][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='Mass']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-09-07 16:02:38.395][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='Molecular Formula']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-09-07 16:02:38.395][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='InChI']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-09-07 16:02:38.395][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='InChIKey']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-09-07 16:02:38.395][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='Log P']/../../..//PC-InfoData_value_fval".
biodb.DEBUG[2024-09-07 16:02:38.395][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='Molecular Weight']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-09-07 16:02:38.395][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='SMILES']/../PC-Urn_name[text()='Canonical']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-09-07 16:02:38.395][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='SMILES']/../PC-Urn_name[text()='Isomeric']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-09-07 16:02:38.396][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2024-09-07 16:02:38.397][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-09-07 16:02:38.397][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2024-09-07 16:02:38.397][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2024-09-07 16:02:38.397][self$setPropertyValue] Setting property "scheduler.n" to "5".
biodb.DEBUG[2024-09-07 16:02:38.398][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-09-07 16:02:38.399][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-09-07 16:02:38.399][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-09-07 16:02:38.400][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-09-07 16:02:38.401][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-09-07 16:02:38.402][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-09-07 16:02:38.402][self$setPropertyValue] Setting property "urls" to "https://pubchem.ncbi.nlm.nih.gov/".
biodb.DEBUG[2024-09-07 16:02:38.402][self$setPropertyValue] Setting property "urls" to "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/".
biodb.DEBUG[2024-09-07 16:02:38.402][self$setPropertyValue] Setting property "urls" to "https://pubchem.ncbi.nlm.nih.gov/rest/pug/".
biodb.DEBUG[2024-09-07 16:02:38.403][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-09-07 16:02:38.404][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-09-07 16:02:38.405][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2024-09-07 16:02:38.405][self$setPropertyValue] Setting property "xml.ns" to "http://www.ncbi.nlm.nih.gov".
biodb.DEBUG[2024-09-07 16:02:38.406][self$getDbsInfo()$define] Define connector ncbi.pubchem.subst.
biodb.DEBUG[2024-09-07 16:02:38.407][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-09-07 16:02:38.408][self$setPropertyValue] Setting property "description" to "PubChem Substance database.".
biodb.DEBUG[2024-09-07 16:02:38.409][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-09-07 16:02:38.410][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-09-07 16:02:38.410][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-09-07 16:02:38.411][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-09-07 16:02:38.412][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2024-09-07 16:02:38.412][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-09-07 16:02:38.413][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2024-09-07 16:02:38.414][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-09-07 16:02:38.415][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-09-07 16:02:38.415][self$setPropertyValue] Setting property "name" to "PubChem Substance".
biodb.DEBUG[2024-09-07 16:02:38.416][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-09-07 16:02:38.417][self$setPropertyValue] Setting property "parsing.expr" to "//PC-ID_id".
biodb.DEBUG[2024-09-07 16:02:38.417][self$setPropertyValue] Setting property "parsing.expr" to "//PC-CompoundType_id_cid".
biodb.DEBUG[2024-09-07 16:02:38.417][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2024-09-07 16:02:38.418][self$setPropertyValue]
biodb.DEBUG[2024-09-07 16:02:38.419][self$setPropertyValue] Setting property "scheduler.n" to "5".
biodb.DEBUG[2024-09-07 16:02:38.420][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-09-07 16:02:38.420][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-09-07 16:02:38.421][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-09-07 16:02:38.422][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-09-07 16:02:38.422][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-09-07 16:02:38.423][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-09-07 16:02:38.424][self$setPropertyValue] Setting property "urls" to "https://pubchem.ncbi.nlm.nih.gov/".
biodb.DEBUG[2024-09-07 16:02:38.424][self$setPropertyValue] Setting property "urls" to "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/".
biodb.DEBUG[2024-09-07 16:02:38.424][self$setPropertyValue] Setting property "urls" to "https://pubchem.ncbi.nlm.nih.gov/rest/pug/".
biodb.DEBUG[2024-09-07 16:02:38.424][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-09-07 16:02:38.425][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-09-07 16:02:38.426][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2024-09-07 16:02:38.427][self$setPropertyValue] Setting property "xml.ns" to "http://www.ncbi.nlm.nih.gov".
biodb.DEBUG[2024-09-07 16:02:38.431][self$getEntryFields()$define] Define field ncbi.ccds.id.
biodb.DEBUG[2024-09-07 16:02:38.432][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2024-09-07 16:02:38.433][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2024-09-07 16:02:38.434][self$getEntryFields()$define] Define field ncbi.pubchem.subst.id.
biodb.DEBUG[2024-09-07 16:02:38.435][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2024-09-07 16:02:38.437][self$getEntryFields()$define] Define field uniprot.id.
biodb.DEBUG[2024-09-07 16:02:38.454][initialize] Initialize connector ncbi.ccds.
biodb.DEBUG[2024-09-07 16:02:38.455][initialize] Register connector ncbi.ccds with the request scheduler
biodb.DEBUG[2024-09-07 16:02:38.458][private$bdb$getRequestScheduler()$re ...] Register connector ncbi.ccds.
biodb.DEBUG[2024-09-07 16:02:38.461][private$addConnectorRules] Create new rule for URL "www.ncbi.nlm.nih.gov" of connector "ncbi.ccds".
biodb.DEBUG[2024-09-07 16:02:38.464][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-09-07 16:02:38.464][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-09-07 16:02:38.465][private$addConnectorRules] Create new rule for URL "eutils.ncbi.nlm.nih.gov" of connector "ncbi.ccds".
biodb.DEBUG[2024-09-07 16:02:38.466][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-09-07 16:02:38.467][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-09-07 16:02:38.468][bdb$getFactory()$createConn] Creating new connector ncbi.ccds for database class ncbi.ccds .
biodb.INFO [2024-09-07 16:02:38.475][biodb::testThat]
biodb.INFO [2024-09-07 16:02:38.476][biodb::testThat] Running test function  test.entry.fields  (" Entry fields have a correct value ").
biodb.INFO [2024-09-07 16:02:38.476][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-09-07 16:02:38.477][biodb::testThat]
biodb.TRACE[2024-09-07 16:02:38.480][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/bbs-3.20-bioc-longtests/meat/biodbNcbi.Rcheck/biodbNcbi/testref/entry-ncbi.ccds-CCDS12227.1-content.html".
biodb.DEBUG[2024-09-07 16:02:38.481][biodb$getFactory()$createEntryFromCo ...] Creating NCBI CCDS entries from 1 content(s).
biodb.DEBUG[2024-09-07 16:02:38.483][biodb$getFactory()$createEntryFromCo ...] Parsing 1 NCBI CCDS entries.
biodb.DEBUG[2024-09-07 16:02:38.489][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:02:38.490][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:02:38.491][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:02:38.502][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:02:38.503][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:02:38.503][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:02:38.504][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:02:38.528][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:02:38.529][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:02:38.529][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:38.530][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:38.531][ef$get] Asked field names are: sequence.
biodb.TRACE[2024-09-07 16:02:38.540][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-09-07 16:02:38.541][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:38.542][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:38.568][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2024-09-07 16:02:38.569][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-09-07 16:02:38.570][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:38.571][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:38.572][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-09-07 16:02:38.572][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-09-07 16:02:38.573][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:38.574][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:38.575][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-09-07 16:02:38.575][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-09-07 16:02:38.576][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:38.577][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:38.577][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:02:38.578][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:02:38.579][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:38.580][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:38.580][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-09-07 16:02:38.581][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-09-07 16:02:38.582][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:38.583][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:38.583][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:02:38.584][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:02:38.585][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:38.586][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:38.586][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:02:38.587][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:02:38.588][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:38.588][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:38.589][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:02:38.590][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:02:38.591][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:38.592][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:38.616][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:02:38.616][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:02:38.617][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:38.618][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:38.619][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:02:38.619][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:02:38.620][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:38.621][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:38.621][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:02:38.622][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:02:38.623][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:38.624][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:02:38.624][biodb$getFactory()$createEntryFromCo ...] Accession numbers: CCDS12227.1.
biodb.TRACE[2024-09-07 16:02:38.626][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-09-07 16:02:38.627][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-09-07 16:02:38.628][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:38.628][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:38.629][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-09-07 16:02:38.630][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-09-07 16:02:38.631][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:38.631][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:38.651][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-09-07 16:02:38.652][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-09-07 16:02:38.653][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:38.653][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:38.654][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-09-07 16:02:38.655][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-09-07 16:02:38.655][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:38.656][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:38.657][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-09-07 16:02:38.658][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-09-07 16:02:38.658][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:38.659][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:38.660][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-09-07 16:02:38.661][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-09-07 16:02:38.661][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:38.662][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:38.674][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:02:38.675][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:02:38.676][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:38.677][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:38.687][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-09-07 16:02:38.688][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-09-07 16:02:38.689][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:38.689][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:38.694][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:02:38.694][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:02:38.695][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:38.696][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:38.696][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:02:38.697][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:02:38.698][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:38.699][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:38.699][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:02:38.700][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:02:38.701][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:38.701][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:38.704][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:02:38.704][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:02:38.705][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:38.706][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:38.706][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:02:38.707][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:02:38.708][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:38.709][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:38.709][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:02:38.710][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:02:38.711][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:38.712][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:38.713][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-09-07 16:02:38.713][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-09-07 16:02:38.714][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:38.715][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:38.715][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-09-07 16:02:38.716][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-09-07 16:02:38.717][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:38.718][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:38.718][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-09-07 16:02:38.719][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-09-07 16:02:38.720][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:38.721][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:38.727][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:02:38.728][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:02:38.729][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:38.730][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:38.730][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:02:38.731][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:02:38.732][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:38.733][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:38.734][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:02:38.734][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:02:38.735][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:38.736][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:38.737][ef$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:02:38.737][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:02:38.738][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:38.739][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:38.739][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:02:38.740][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:02:38.741][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:38.742][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:38.749][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2024-09-07 16:02:38.750][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-09-07 16:02:38.750][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:38.751][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:38.752][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-09-07 16:02:38.753][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-09-07 16:02:38.753][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:38.754][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:38.755][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-09-07 16:02:38.755][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-09-07 16:02:38.760][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:38.761][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:38.762][ef$get] Asked field names are: sequence.
biodb.TRACE[2024-09-07 16:02:38.763][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-09-07 16:02:38.764][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:38.764][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:38.765][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2024-09-07 16:02:38.766][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-09-07 16:02:38.766][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:38.767][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:38.774][ef$get] Asked field names are: aa.seq.
biodb.TRACE[2024-09-07 16:02:38.775][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-09-07 16:02:38.776][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:38.776][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:38.780][ef$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:02:38.781][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:02:38.781][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:38.782][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:38.795][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/bbs-3.20-bioc-longtests/meat/biodbNcbi.Rcheck/biodbNcbi/testref/entry-ncbi.ccds-CCDS43240.1-content.html".
biodb.DEBUG[2024-09-07 16:02:38.820][biodb$getFactory()$createEntryFromCo ...] Creating NCBI CCDS entries from 1 content(s).
biodb.DEBUG[2024-09-07 16:02:38.821][biodb$getFactory()$createEntryFromCo ...] Parsing 1 NCBI CCDS entries.
biodb.DEBUG[2024-09-07 16:02:38.822][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:02:38.823][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:02:38.823][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:02:38.827][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:02:38.828][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:02:38.829][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:02:38.829][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:02:38.838][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:02:38.839][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:02:38.840][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:38.841][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:38.853][ef$get] Asked field names are: sequence.
biodb.TRACE[2024-09-07 16:02:38.854][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-09-07 16:02:38.855][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:38.856][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:38.857][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2024-09-07 16:02:38.861][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-09-07 16:02:38.862][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:38.863][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:38.864][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-09-07 16:02:38.865][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-09-07 16:02:38.865][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:38.866][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:38.867][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-09-07 16:02:38.868][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-09-07 16:02:38.868][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:38.869][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:38.870][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:02:38.870][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:02:38.871][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:38.872][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:38.872][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-09-07 16:02:38.873][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-09-07 16:02:38.874][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:38.875][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:38.876][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:02:38.876][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:02:38.877][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:38.878][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:38.878][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:02:38.879][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:02:38.880][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:38.881][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:38.882][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:02:38.882][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:02:38.883][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:38.884][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:38.885][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:02:38.886][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:02:38.886][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:38.887][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:38.888][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:02:38.888][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:02:38.889][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:38.890][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:38.890][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:02:38.891][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:02:38.892][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:38.893][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:02:38.893][biodb$getFactory()$createEntryFromCo ...] Accession numbers: CCDS43240.1.
biodb.TRACE[2024-09-07 16:02:38.908][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-09-07 16:02:38.908][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-09-07 16:02:38.909][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:38.910][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:38.910][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-09-07 16:02:38.911][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-09-07 16:02:38.912][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:38.913][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:38.913][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-09-07 16:02:38.914][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-09-07 16:02:38.915][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:38.915][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:38.916][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-09-07 16:02:38.917][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-09-07 16:02:38.917][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:38.918][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:38.919][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-09-07 16:02:38.920][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-09-07 16:02:38.920][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:38.921][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:38.922][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-09-07 16:02:38.922][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-09-07 16:02:38.923][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:38.924][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:38.925][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:02:38.926][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:02:38.926][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:38.927][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:38.931][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-09-07 16:02:38.932][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-09-07 16:02:38.933][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:38.933][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:38.938][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:02:38.938][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:02:38.939][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:38.940][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:38.941][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:02:38.941][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:02:38.942][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:38.943][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:38.943][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:02:38.944][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:02:38.945][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:38.946][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:38.948][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:02:38.948][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:02:38.949][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:38.950][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:38.950][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:02:38.951][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:02:38.952][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:38.953][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:38.953][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:02:38.954][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:02:38.955][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:38.955][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:38.956][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-09-07 16:02:38.957][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-09-07 16:02:38.958][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:38.958][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:38.959][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-09-07 16:02:38.960][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-09-07 16:02:38.961][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:38.961][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:38.962][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-09-07 16:02:38.963][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-09-07 16:02:38.964][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:38.968][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:38.981][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:02:38.981][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:02:38.982][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:38.983][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:38.984][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:02:38.985][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:02:38.985][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:38.986][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:38.987][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:02:38.987][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:02:38.988][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:38.989][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:38.989][ef$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:02:38.990][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:02:38.991][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:38.992][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:38.992][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:02:38.993][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:02:38.994][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:38.994][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:39.002][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2024-09-07 16:02:39.002][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-09-07 16:02:39.003][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:39.004][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:39.005][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-09-07 16:02:39.005][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-09-07 16:02:39.006][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:39.007][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:39.007][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-09-07 16:02:39.008][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-09-07 16:02:39.009][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:39.010][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:39.010][ef$get] Asked field names are: sequence.
biodb.TRACE[2024-09-07 16:02:39.011][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-09-07 16:02:39.012][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:39.013][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:39.014][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2024-09-07 16:02:39.014][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-09-07 16:02:39.015][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:39.016][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:39.023][ef$get] Asked field names are: aa.seq.
biodb.TRACE[2024-09-07 16:02:39.023][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-09-07 16:02:39.024][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:39.025][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:39.029][ef$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:02:39.029][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:02:39.030][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:39.031][ef$get] fields variable is a list.
biodb.INFO [2024-09-07 16:02:39.038][biodb::testThat]
biodb.INFO [2024-09-07 16:02:39.039][biodb::testThat] Running test function  test.rt.unit  (" RT unit is defined when there is an RT value. ").
biodb.INFO [2024-09-07 16:02:39.039][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-09-07 16:02:39.040][biodb::testThat]
biodb.DEBUG[2024-09-07 16:02:39.042][private$loadEntries] Creating entries from ids [2]: "CCDS12227.1, CCDS43240.1".
biodb.DEBUG[2024-09-07 16:02:39.047][conn$getEntryContent] Get NCBI CCDS entry content(s) for 2 id(s)...
biodb.TRACE[2024-09-07 16:02:39.051][cch$loadFileContent] Trying to load 2 files from cache: [2]: "CCDS12227.1, CCDS43240.1".
biodb.TRACE[2024-09-07 16:02:39.052][cch$loadFileContent] file.exist = [2]: "TRUE, TRUE".
biodb.TRACE[2024-09-07 16:02:39.055][loadFileContents] Loaded 2 files from cache: [2]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/CCDS12227.1.html, /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/CCDS43240.1.html".
biodb.DEBUG[2024-09-07 16:02:39.056][conn$getEntryContent] 2 NCBI CCDS entry content(s) loaded from cache.
biodb.DEBUG[2024-09-07 16:02:39.057][self$createEntryFromContent] Creating NCBI CCDS entries from 2 content(s).
biodb.DEBUG[2024-09-07 16:02:39.058][self$createEntryFromContent] Parsing 2 NCBI CCDS entries.
biodb.DEBUG[2024-09-07 16:02:39.059][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:02:39.060][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:02:39.060][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:02:39.065][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:02:39.065][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:02:39.066][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:02:39.067][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:02:39.081][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:02:39.082][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:02:39.083][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:39.083][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:39.084][ef$get] Asked field names are: sequence.
biodb.TRACE[2024-09-07 16:02:39.085][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-09-07 16:02:39.086][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:39.086][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:39.088][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2024-09-07 16:02:39.088][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-09-07 16:02:39.089][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:39.090][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:39.095][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-09-07 16:02:39.096][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-09-07 16:02:39.097][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:39.097][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:39.098][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-09-07 16:02:39.099][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-09-07 16:02:39.100][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:39.100][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:39.101][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:02:39.102][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:02:39.102][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:39.103][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:39.104][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-09-07 16:02:39.105][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-09-07 16:02:39.105][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:39.106][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:39.107][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:02:39.107][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:02:39.108][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:39.109][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:39.110][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:02:39.110][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:02:39.111][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:39.112][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:39.112][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:02:39.113][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:02:39.114][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:39.115][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:02:39.115][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:02:39.116][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:02:39.117][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:02:39.121][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:02:39.122][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:02:39.122][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:02:39.123][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:02:39.131][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:02:39.132][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:02:39.133][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:39.134][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:39.134][ef$get] Asked field names are: sequence.
biodb.TRACE[2024-09-07 16:02:39.135][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-09-07 16:02:39.136][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:39.137][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:39.138][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2024-09-07 16:02:39.139][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-09-07 16:02:39.139][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:39.140][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:39.141][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-09-07 16:02:39.142][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-09-07 16:02:39.143][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:39.143][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:39.144][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-09-07 16:02:39.145][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-09-07 16:02:39.145][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:39.146][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:39.147][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:02:39.148][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:02:39.148][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:39.149][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:39.150][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-09-07 16:02:39.150][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-09-07 16:02:39.151][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:39.152][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:39.153][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:02:39.153][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:02:39.154][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:39.155][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:39.155][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:02:39.156][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:02:39.157][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:39.158][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:39.158][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:02:39.159][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:02:39.160][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:39.160][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:39.161][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:02:39.162][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:02:39.163][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:39.163][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:39.164][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:02:39.165][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:02:39.166][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:39.166][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:39.167][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:02:39.168][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:02:39.169][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:39.170][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:39.170][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:02:39.171][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:02:39.172][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:39.173][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:39.173][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:02:39.174][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:02:39.175][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:39.176][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:39.176][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:02:39.177][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:02:39.178][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:39.179][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:02:39.179][self$createEntryFromContent] Accession numbers: CCDS12227.1, CCDS43240.1.
biodb.TRACE[2024-09-07 16:02:39.180][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2024-09-07 16:02:39.181][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2024-09-07 16:02:39.182][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:39.182][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:39.183][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2024-09-07 16:02:39.184][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2024-09-07 16:02:39.185][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:39.185][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:39.186][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2024-09-07 16:02:39.187][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2024-09-07 16:02:39.187][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:39.188][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:39.193][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2024-09-07 16:02:39.194][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2024-09-07 16:02:39.194][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:39.195][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:39.196][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2024-09-07 16:02:39.196][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2024-09-07 16:02:39.197][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:39.198][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:39.199][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2024-09-07 16:02:39.199][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2024-09-07 16:02:39.200][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:39.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2024-09-07 16:02:39.213][biodb::testThat]
biodb.INFO [2024-09-07 16:02:39.214][biodb::testThat] Running test function  test.searchForEntries  (" We can search for an entry by searchable field ").
biodb.INFO [2024-09-07 16:02:39.214][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-09-07 16:02:39.215][biodb::testThat]
biodb.INFO [2024-09-07 16:02:39.220][biodb::testThat]
biodb.INFO [2024-09-07 16:02:39.221][biodb::testThat] Running test function  test.searchByName  (" We can search for an entry by name. ").
biodb.INFO [2024-09-07 16:02:39.221][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-09-07 16:02:39.222][biodb::testThat]
biodb.WARN [2024-09-07 16:02:39.236][self$searchForEntries] This database is not searchable by field "name".
biodb.WARN [2024-09-07 16:02:39.250][self$searchForEntries] This database is not searchable by field "name".
biodb.INFO [2024-09-07 16:02:39.258][biodb::testThat]
biodb.INFO [2024-09-07 16:02:39.258][biodb::testThat] Running test function  testEntryLoading  (" We can load an entry from the database. ").
biodb.INFO [2024-09-07 16:02:39.259][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-09-07 16:02:39.260][biodb::testThat]
biodb.TRACE[2024-09-07 16:02:39.278][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-09-07 16:02:39.279][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-09-07 16:02:39.279][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:39.280][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:39.281][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-09-07 16:02:39.282][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-09-07 16:02:39.282][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:39.283][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:39.284][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-09-07 16:02:39.285][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-09-07 16:02:39.285][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:39.286][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:39.287][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-09-07 16:02:39.288][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-09-07 16:02:39.289][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:39.289][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:39.290][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-09-07 16:02:39.291][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-09-07 16:02:39.292][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:39.292][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:39.293][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-09-07 16:02:39.294][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-09-07 16:02:39.294][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:39.295][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:39.303][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-09-07 16:02:39.303][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-09-07 16:02:39.304][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:39.305][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:39.306][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-09-07 16:02:39.306][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-09-07 16:02:39.311][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:39.312][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:39.313][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-09-07 16:02:39.314][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-09-07 16:02:39.314][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:39.315][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:39.316][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-09-07 16:02:39.317][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-09-07 16:02:39.317][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:39.318][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:39.319][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-09-07 16:02:39.319][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-09-07 16:02:39.320][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:39.321][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:39.321][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-09-07 16:02:39.322][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-09-07 16:02:39.323][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:39.324][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2024-09-07 16:02:39.329][biodb::testThat]
biodb.INFO [2024-09-07 16:02:39.330][biodb::testThat] Running test function  test.entry.page.url  (" We can get a URL pointing to the entry page. ").
biodb.INFO [2024-09-07 16:02:39.330][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-09-07 16:02:39.331][biodb::testThat]
biodb.INFO [2024-09-07 16:02:39.338][biodb::testThat]
biodb.INFO [2024-09-07 16:02:39.339][biodb::testThat] Running test function  test.entry.image.url  (" We can get a URL pointing to the entry image. ").
biodb.INFO [2024-09-07 16:02:39.340][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-09-07 16:02:39.341][biodb::testThat]
biodb.INFO [2024-09-07 16:02:39.347][biodb::testThat]
biodb.INFO [2024-09-07 16:02:39.348][biodb::testThat] Running test function  test.entry.page.url.download  (" The entry page URL can be downloaded. ").
biodb.INFO [2024-09-07 16:02:39.348][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-09-07 16:02:39.349][biodb::testThat]
biodb.DEBUG[2024-09-07 16:02:39.352][function(conn, opt)] Trying to download "https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS12227.1".
biodb.DEBUG[2024-09-07 16:02:41.149][getUrlContent] Use RCurl for downloading content of URL https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS12227.1.
biodb.INFO [2024-09-07 16:02:42.928][biodb::testThat]
biodb.INFO [2024-09-07 16:02:42.929][biodb::testThat] Running test function  test.entry.image.url.download  (" The entry image URL can be downloaded. ").
biodb.INFO [2024-09-07 16:02:42.930][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-09-07 16:02:42.930][biodb::testThat]
biodb.INFO [2024-09-07 16:02:42.935][bdb$terminate] Closing BiodbMain instance...
biodb.DEBUG[2024-09-07 16:02:42.936][private$conn[[conn]]$.__enclos_env__ ...] Unregister connector ncbi.ccds from the request scheduler
biodb.INFO [2024-09-07 16:02:42.937][self$deleteConn] Connector "ncbi.ccds" deleted.
biodb.DEBUG[2024-09-07 16:02:42.937][notifyObservers] Notify observers for terminate.
biodb.DEBUG[2024-09-07 16:02:42.938][FUN] Trying to call function terminate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:02:42.939][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:02:42.939][FUN] Trying to call function terminate on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:02:42.940][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:02:42.941][FUN] Trying to call function terminate on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:02:42.941][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.INFO [2024-09-07 16:02:42.949][biodb::testContext]
biodb.INFO [2024-09-07 16:02:42.950][biodb::testContext] ********************************************************************************
biodb.INFO [2024-09-07 16:02:42.951][biodb::testContext] Test context - Gene long tests
biodb.INFO [2024-09-07 16:02:42.951][biodb::testContext] ********************************************************************************
biodb.INFO [2024-09-07 16:02:42.952][biodb::testContext]
biodb.INFO [2024-09-07 16:02:42.954][private$loadBiodbPkgsDefinitions] Loading definitions from package biodb version 1.13.0.
biodb.DEBUG[2024-09-07 16:02:42.955][self$loadDefinitions] Load definitions from file "/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/biodb/definitions.yml".
biodb.DEBUG[2024-09-07 16:02:42.958][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-09-07 16:02:42.959][self$getConfig()$define] Define config key allow.huge.downloads.
biodb.DEBUG[2024-09-07 16:02:42.960][self$set] Set key allow.huge.downloads to TRUE.
biodb.DEBUG[2024-09-07 16:02:42.960][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-09-07 16:02:42.961][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:02:42.962][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:02:42.962][self$getConfig()$define] Define config key autoload.extra.pkgs.
biodb.DEBUG[2024-09-07 16:02:42.963][self$set] Set key autoload.extra.pkgs to TRUE.
biodb.DEBUG[2024-09-07 16:02:42.964][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-09-07 16:02:42.964][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:02:42.965][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:02:42.966][self$getConfig()$define] Define config key cache.all.requests.
biodb.DEBUG[2024-09-07 16:02:42.967][self$set] Set key cache.all.requests to TRUE.
biodb.DEBUG[2024-09-07 16:02:42.967][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-09-07 16:02:42.968][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:02:42.969][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:02:42.969][self$getConfig()$define] Define config key cache.directory.
biodb.DEBUG[2024-09-07 16:02:42.970][self$getConfig()$define] Define config key cache.read.only.
biodb.DEBUG[2024-09-07 16:02:42.971][self$set] Set key cache.read.only to FALSE.
biodb.DEBUG[2024-09-07 16:02:42.971][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-09-07 16:02:42.972][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:02:42.973][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:02:42.974][self$getConfig()$define] Define config key cache.subfolders.
biodb.DEBUG[2024-09-07 16:02:42.974][self$getConfig()$define] Define config key cache.system.
biodb.DEBUG[2024-09-07 16:02:42.975][self$set] Set key cache.system to TRUE.
biodb.DEBUG[2024-09-07 16:02:42.976][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-09-07 16:02:42.976][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:02:42.977][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:02:42.978][self$getConfig()$define] Define config key use.cache.for.local.db.
biodb.DEBUG[2024-09-07 16:02:42.978][self$set] Set key use.cache.for.local.db to FALSE.
biodb.DEBUG[2024-09-07 16:02:42.979][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-09-07 16:02:42.980][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:02:42.980][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:02:42.981][self$getConfig()$define] Define config key dwnld.chunk.size.
biodb.DEBUG[2024-09-07 16:02:42.982][self$getConfig()$define] Define config key dwnld.timeout.
biodb.DEBUG[2024-09-07 16:02:42.982][self$set] Set key dwnld.timeout to 3600.
biodb.DEBUG[2024-09-07 16:02:42.983][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-09-07 16:02:42.984][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:02:42.984][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:02:42.985][self$getConfig()$define] Define config key compute.fields.
biodb.DEBUG[2024-09-07 16:02:42.986][self$set] Set key compute.fields to TRUE.
biodb.DEBUG[2024-09-07 16:02:42.987][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-09-07 16:02:42.987][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:02:42.988][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:02:42.995][self$getConfig()$define] Define config key factory.cache.
biodb.DEBUG[2024-09-07 16:02:42.996][self$getConfig()$define] Define config key force.locale.
biodb.DEBUG[2024-09-07 16:02:42.997][self$set] Set key force.locale to TRUE.
biodb.DEBUG[2024-09-07 16:02:42.998][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-09-07 16:02:42.998][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:02:42.999][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:02:43.000][self$getConfig()$define] Define config key longterm.cache.subfolder.
biodb.DEBUG[2024-09-07 16:02:43.000][self$getConfig()$define] Define config key msg.caution.lvl.
biodb.DEBUG[2024-09-07 16:02:43.001][self$getConfig()$define] Define config key msg.debug.lvl.
biodb.DEBUG[2024-09-07 16:02:43.002][self$getConfig()$define] Define config key msg.info.lvl.
biodb.DEBUG[2024-09-07 16:02:43.002][self$getConfig()$define] Define config key multival.field.sep.
biodb.DEBUG[2024-09-07 16:02:43.003][self$set] Set key multival.field.sep to ";".
biodb.DEBUG[2024-09-07 16:02:43.004][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-09-07 16:02:43.004][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:02:43.005][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:02:43.006][self$getConfig()$define] Define config key intra.field.name.sep.
biodb.DEBUG[2024-09-07 16:02:43.007][self$set] Set key intra.field.name.sep to ".".
biodb.DEBUG[2024-09-07 16:02:43.007][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-09-07 16:02:43.008][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:02:43.008][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:02:43.009][self$getConfig()$define] Define config key entries.sep.
biodb.DEBUG[2024-09-07 16:02:43.010][self$set] Set key entries.sep to "|".
biodb.DEBUG[2024-09-07 16:02:43.010][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-09-07 16:02:43.011][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:02:43.012][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:02:43.012][self$getConfig()$define] Define config key offline.
biodb.DEBUG[2024-09-07 16:02:43.013][self$set] Set key offline to FALSE.
biodb.DEBUG[2024-09-07 16:02:43.014][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-09-07 16:02:43.015][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:02:43.015][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:02:43.016][self$getConfig()$define] Define config key persistent.cache.impl.
biodb.DEBUG[2024-09-07 16:02:43.017][self$set] Set key persistent.cache.impl to "custom".
biodb.DEBUG[2024-09-07 16:02:43.017][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-09-07 16:02:43.018][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:02:43.019][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:02:43.019][self$getConfig()$define] Define config key proton.mass.
biodb.DEBUG[2024-09-07 16:02:43.020][self$set] Set key proton.mass to 1.0072765.
biodb.DEBUG[2024-09-07 16:02:43.021][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-09-07 16:02:43.021][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:02:43.022][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:02:43.023][self$getConfig()$define] Define config key shortterm.cache.subfolder.
biodb.DEBUG[2024-09-07 16:02:43.023][self$getConfig()$define] Define config key svn.binary.path.
biodb.DEBUG[2024-09-07 16:02:43.039][self$set] Set key svn.binary.path to "".
biodb.DEBUG[2024-09-07 16:02:43.040][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-09-07 16:02:43.041][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:02:43.041][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:02:43.042][self$getConfig()$define] Define config key test.functions.
biodb.DEBUG[2024-09-07 16:02:43.043][self$getConfig()$define] Define config key useragent.
biodb.DEBUG[2024-09-07 16:02:43.044][self$set] Set key useragent to "R Bioconductor biodb library.".
biodb.DEBUG[2024-09-07 16:02:43.044][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-09-07 16:02:43.045][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:02:43.046][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:02:43.046][self$getDbsInfo()$define] Define connector comp.csv.file.
biodb.DEBUG[2024-09-07 16:02:43.048][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-09-07 16:02:43.049][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields.".
biodb.DEBUG[2024-09-07 16:02:43.049][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-09-07 16:02:43.050][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-09-07 16:02:43.051][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-09-07 16:02:43.051][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-09-07 16:02:43.052][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-09-07 16:02:43.053][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-09-07 16:02:43.054][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2024-09-07 16:02:43.055][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-09-07 16:02:43.056][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-09-07 16:02:43.056][self$setPropertyValue] Setting property "name" to "Compound CSV File".
biodb.DEBUG[2024-09-07 16:02:43.057][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-09-07 16:02:43.058][self$setPropertyValue]
biodb.DEBUG[2024-09-07 16:02:43.059][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-09-07 16:02:43.060][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-09-07 16:02:43.060][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2024-09-07 16:02:43.060][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2024-09-07 16:02:43.060][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2024-09-07 16:02:43.060][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2024-09-07 16:02:43.060][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-09-07 16:02:43.061][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-09-07 16:02:43.062][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-09-07 16:02:43.062][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-09-07 16:02:43.063][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-09-07 16:02:43.064][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-09-07 16:02:43.065][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-09-07 16:02:43.065][self$setPropertyValue]
biodb.DEBUG[2024-09-07 16:02:43.066][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-09-07 16:02:43.067][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-09-07 16:02:43.067][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-09-07 16:02:43.068][self$setPropertyValue]
biodb.DEBUG[2024-09-07 16:02:43.069][self$getDbsInfo()$define] Define connector comp.sqlite.
biodb.DEBUG[2024-09-07 16:02:43.070][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-09-07 16:02:43.071][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside an SQLite file.".
biodb.DEBUG[2024-09-07 16:02:43.072][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-09-07 16:02:43.073][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-09-07 16:02:43.073][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-09-07 16:02:43.074][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-09-07 16:02:43.075][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-09-07 16:02:43.076][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-09-07 16:02:43.076][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2024-09-07 16:02:43.077][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-09-07 16:02:43.078][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-09-07 16:02:43.079][self$setPropertyValue] Setting property "name" to "Compound SQLite".
biodb.DEBUG[2024-09-07 16:02:43.079][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-09-07 16:02:43.080][self$setPropertyValue]
biodb.DEBUG[2024-09-07 16:02:43.081][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-09-07 16:02:43.081][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-09-07 16:02:43.081][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2024-09-07 16:02:43.081][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2024-09-07 16:02:43.081][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2024-09-07 16:02:43.081][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2024-09-07 16:02:43.082][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-09-07 16:02:43.083][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-09-07 16:02:43.084][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-09-07 16:02:43.084][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-09-07 16:02:43.085][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-09-07 16:02:43.086][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-09-07 16:02:43.087][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-09-07 16:02:43.087][self$setPropertyValue]
biodb.DEBUG[2024-09-07 16:02:43.088][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-09-07 16:02:43.089][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-09-07 16:02:43.090][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-09-07 16:02:43.090][self$setPropertyValue]
biodb.DEBUG[2024-09-07 16:02:43.095][self$getDbsInfo()$define] Define connector mass.csv.file.
biodb.DEBUG[2024-09-07 16:02:43.096][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-09-07 16:02:43.097][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields..".
biodb.DEBUG[2024-09-07 16:02:43.098][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-09-07 16:02:43.098][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-09-07 16:02:43.099][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-09-07 16:02:43.100][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-09-07 16:02:43.100][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-09-07 16:02:43.101][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-09-07 16:02:43.102][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2024-09-07 16:02:43.103][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-09-07 16:02:43.104][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2024-09-07 16:02:43.104][self$setPropertyValue] Setting property "name" to "Mass spectra CSV File".
biodb.DEBUG[2024-09-07 16:02:43.105][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-09-07 16:02:43.106][self$setPropertyValue]
biodb.DEBUG[2024-09-07 16:02:43.106][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-09-07 16:02:43.107][self$setPropertyValue]
biodb.DEBUG[2024-09-07 16:02:43.108][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-09-07 16:02:43.109][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-09-07 16:02:43.109][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-09-07 16:02:43.110][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-09-07 16:02:43.111][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-09-07 16:02:43.111][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-09-07 16:02:43.112][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-09-07 16:02:43.113][self$setPropertyValue]
biodb.DEBUG[2024-09-07 16:02:43.113][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-09-07 16:02:43.114][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-09-07 16:02:43.115][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-09-07 16:02:43.115][self$setPropertyValue]
biodb.DEBUG[2024-09-07 16:02:43.116][self$getDbsInfo()$define] Define connector mass.sqlite.
biodb.DEBUG[2024-09-07 16:02:43.117][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-09-07 16:02:43.118][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside an SQLite file.".
biodb.DEBUG[2024-09-07 16:02:43.119][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-09-07 16:02:43.120][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-09-07 16:02:43.120][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-09-07 16:02:43.121][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-09-07 16:02:43.122][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-09-07 16:02:43.122][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-09-07 16:02:43.123][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2024-09-07 16:02:43.124][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-09-07 16:02:43.125][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2024-09-07 16:02:43.125][self$setPropertyValue] Setting property "name" to "Mass spectra SQLite".
biodb.DEBUG[2024-09-07 16:02:43.126][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-09-07 16:02:43.127][self$setPropertyValue]
biodb.DEBUG[2024-09-07 16:02:43.128][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-09-07 16:02:43.128][self$setPropertyValue]
biodb.DEBUG[2024-09-07 16:02:43.129][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-09-07 16:02:43.130][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-09-07 16:02:43.130][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-09-07 16:02:43.131][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-09-07 16:02:43.132][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-09-07 16:02:43.132][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-09-07 16:02:43.133][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-09-07 16:02:43.134][self$setPropertyValue]
biodb.DEBUG[2024-09-07 16:02:43.134][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-09-07 16:02:43.135][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-09-07 16:02:43.136][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-09-07 16:02:43.136][self$setPropertyValue]
biodb.DEBUG[2024-09-07 16:02:43.137][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-09-07 16:02:43.138][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:02:43.139][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:02:43.139][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-09-07 16:02:43.140][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:02:43.141][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:02:43.141][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:02:43.142][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:02:43.143][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-09-07 16:02:43.143][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:02:43.144][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:02:43.145][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:02:43.145][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:02:43.146][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-09-07 16:02:43.147][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:02:43.147][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:02:43.148][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:02:43.149][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:02:43.149][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-09-07 16:02:43.150][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:02:43.150][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:02:43.151][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:02:43.152][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:02:43.152][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-09-07 16:02:43.153][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:02:43.154][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:02:43.154][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:02:43.155][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:02:43.156][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-09-07 16:02:43.156][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:02:43.157][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:02:43.158][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:02:43.158][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:02:43.159][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-09-07 16:02:43.159][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:02:43.160][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:02:43.161][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:02:43.161][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:02:43.162][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-09-07 16:02:43.163][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:02:43.163][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:02:43.164][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:02:43.165][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:02:43.165][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-09-07 16:02:43.166][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:02:43.166][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:02:43.167][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:02:43.168][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:02:43.168][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-09-07 16:02:43.169][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:02:43.170][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:02:43.170][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:02:43.171][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:02:43.172][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-09-07 16:02:43.172][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:02:43.176][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:02:43.177][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:02:43.178][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:02:43.178][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-09-07 16:02:43.179][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:02:43.179][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:02:43.180][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:02:43.181][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:02:43.181][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-09-07 16:02:43.182][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:02:43.183][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:02:43.183][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:02:43.184][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:02:43.185][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-09-07 16:02:43.185][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:02:43.186][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:02:43.187][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:02:43.187][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:02:43.188][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-09-07 16:02:43.188][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:02:43.189][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:02:43.190][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:02:43.190][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:02:43.191][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-09-07 16:02:43.192][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:02:43.192][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:02:43.193][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:02:43.193][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:02:43.194][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-09-07 16:02:43.195][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:02:43.195][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:02:43.196][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:02:43.197][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:02:43.197][self$getEntryFields()$define] Define field accession.
biodb.DEBUG[2024-09-07 16:02:43.198][self$getEntryFields()$define] Define field description.
biodb.DEBUG[2024-09-07 16:02:43.199][self$getEntryFields()$define] Define field name.
biodb.DEBUG[2024-09-07 16:02:43.200][self$getEntryFields()$define] Define field cas.id.
biodb.DEBUG[2024-09-07 16:02:43.201][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2024-09-07 16:02:43.202][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2024-09-07 16:02:43.203][self$getEntryFields()$define] Define field comp.csv.file.id.
biodb.DEBUG[2024-09-07 16:02:43.204][self$getEntryFields()$define] Define field comp.sqlite.id.
biodb.DEBUG[2024-09-07 16:02:43.205][self$getEntryFields()$define] Define field expasy.enzyme.id.
biodb.DEBUG[2024-09-07 16:02:43.206][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2024-09-07 16:02:43.207][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2024-09-07 16:02:43.208][self$getEntryFields()$define] Define field kegg.genes.id.
biodb.DEBUG[2024-09-07 16:02:43.209][self$getEntryFields()$define] Define field mass.csv.file.id.
biodb.DEBUG[2024-09-07 16:02:43.210][self$getEntryFields()$define] Define field mass.sqlite.id.
biodb.DEBUG[2024-09-07 16:02:43.211][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2024-09-07 16:02:43.212][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2024-09-07 16:02:43.213][self$getEntryFields()$define] Define field compound.id.
biodb.DEBUG[2024-09-07 16:02:43.214][self$getEntryFields()$define] Define field average.mass.
biodb.DEBUG[2024-09-07 16:02:43.215][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2024-09-07 16:02:43.216][self$getEntryFields()$define] Define field monoisotopic.mass.
biodb.DEBUG[2024-09-07 16:02:43.217][self$getEntryFields()$define] Define field nominal.mass.
biodb.DEBUG[2024-09-07 16:02:43.218][self$getEntryFields()$define] Define field peak.attr.
biodb.DEBUG[2024-09-07 16:02:43.219][self$getEntryFields()$define] Define field peak.comp.
biodb.DEBUG[2024-09-07 16:02:43.220][self$getEntryFields()$define] Define field peak.error.ppm.
biodb.DEBUG[2024-09-07 16:02:43.221][self$getEntryFields()$define] Define field peak.formula.
biodb.DEBUG[2024-09-07 16:02:43.222][self$getEntryFields()$define] Define field peak.intensity.
biodb.DEBUG[2024-09-07 16:02:43.223][self$getEntryFields()$define] Define field peak.mass.
biodb.DEBUG[2024-09-07 16:02:43.225][self$getEntryFields()$define] Define field peak.mztheo.
biodb.DEBUG[2024-09-07 16:02:43.226][self$getEntryFields()$define] Define field peak.mzexp.
biodb.DEBUG[2024-09-07 16:02:43.227][self$getEntryFields()$define] Define field peak.mz.
biodb.DEBUG[2024-09-07 16:02:43.228][self$getEntryFields()$define] Define field peak.relative.intensity.
biodb.DEBUG[2024-09-07 16:02:43.229][self$getEntryFields()$define] Define field peaks.
biodb.DEBUG[2024-09-07 16:02:43.230][self$getEntryFields()$define] Define field chrom.col.constructor.
biodb.DEBUG[2024-09-07 16:02:43.231][self$getEntryFields()$define] Define field chrom.col.diameter.
biodb.DEBUG[2024-09-07 16:02:43.232][self$getEntryFields()$define] Define field chrom.col.id.
biodb.DEBUG[2024-09-07 16:02:43.233][self$getEntryFields()$define] Define field chrom.col.length.
biodb.DEBUG[2024-09-07 16:02:43.234][self$getEntryFields()$define] Define field chrom.col.method.protocol.
biodb.DEBUG[2024-09-07 16:02:43.235][self$getEntryFields()$define] Define field chrom.col.name.
biodb.DEBUG[2024-09-07 16:02:43.236][self$getEntryFields()$define] Define field chrom.flow.gradient.
biodb.DEBUG[2024-09-07 16:02:43.237][self$getEntryFields()$define] Define field chrom.flow.rate.
biodb.DEBUG[2024-09-07 16:02:43.238][self$getEntryFields()$define] Define field chrom.rt.
biodb.DEBUG[2024-09-07 16:02:43.239][self$getEntryFields()$define] Define field chrom.rt.max.
biodb.DEBUG[2024-09-07 16:02:43.240][self$getEntryFields()$define] Define field chrom.rt.min.
biodb.DEBUG[2024-09-07 16:02:43.241][self$getEntryFields()$define] Define field chrom.rt.unit.
biodb.DEBUG[2024-09-07 16:02:43.241][self$getEntryFields()$define] Define field chrom.solvent.
biodb.DEBUG[2024-09-07 16:02:43.242][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2024-09-07 16:02:43.243][self$getEntryFields()$define] Define field aa.seq.length.
biodb.DEBUG[2024-09-07 16:02:43.244][self$getEntryFields()$define] Define field aa.seq.location.
biodb.DEBUG[2024-09-07 16:02:43.245][self$getEntryFields()$define] Define field nt.seq.
biodb.DEBUG[2024-09-07 16:02:43.246][self$getEntryFields()$define] Define field nt.seq.length.
biodb.DEBUG[2024-09-07 16:02:43.247][self$getEntryFields()$define] Define field ec.
biodb.DEBUG[2024-09-07 16:02:43.248][self$getEntryFields()$define] Define field organism.
biodb.DEBUG[2024-09-07 16:02:43.249][self$getEntryFields()$define] Define field pathway.class.
biodb.DEBUG[2024-09-07 16:02:43.250][self$getEntryFields()$define] Define field catalytic.activity.
biodb.DEBUG[2024-09-07 16:02:43.251][self$getEntryFields()$define] Define field cofactor.
biodb.DEBUG[2024-09-07 16:02:43.256][self$getEntryFields()$define] Define field gene.symbol.
biodb.DEBUG[2024-09-07 16:02:43.257][self$getEntryFields()$define] Define field charge.
biodb.DEBUG[2024-09-07 16:02:43.258][self$getEntryFields()$define] Define field comp.iupac.name.allowed.
biodb.DEBUG[2024-09-07 16:02:43.259][self$getEntryFields()$define] Define field comp.iupac.name.cas.
biodb.DEBUG[2024-09-07 16:02:43.260][self$getEntryFields()$define] Define field comp.iupac.name.pref.
biodb.DEBUG[2024-09-07 16:02:43.261][self$getEntryFields()$define] Define field comp.iupac.name.syst.
biodb.DEBUG[2024-09-07 16:02:43.262][self$getEntryFields()$define] Define field comp.iupac.name.trad.
biodb.DEBUG[2024-09-07 16:02:43.263][self$getEntryFields()$define] Define field comp.super.class.
biodb.DEBUG[2024-09-07 16:02:43.264][self$getEntryFields()$define] Define field equation.
biodb.DEBUG[2024-09-07 16:02:43.265][self$getEntryFields()$define] Define field formula.
biodb.DEBUG[2024-09-07 16:02:43.266][self$getEntryFields()$define] Define field composition.
biodb.DEBUG[2024-09-07 16:02:43.267][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2024-09-07 16:02:43.268][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2024-09-07 16:02:43.269][self$getEntryFields()$define] Define field logp.
biodb.DEBUG[2024-09-07 16:02:43.270][self$getEntryFields()$define] Define field ms.level.
biodb.DEBUG[2024-09-07 16:02:43.271][self$getEntryFields()$define] Define field ms.mode.
biodb.DEBUG[2024-09-07 16:02:43.272][self$getEntryFields()$define] Define field msdev.
biodb.DEBUG[2024-09-07 16:02:43.272][self$getEntryFields()$define] Define field msdevtype.
biodb.DEBUG[2024-09-07 16:02:43.273][self$getEntryFields()$define] Define field msprecannot.
biodb.DEBUG[2024-09-07 16:02:43.274][self$getEntryFields()$define] Define field msprecmz.
biodb.DEBUG[2024-09-07 16:02:43.275][self$getEntryFields()$define] Define field mstype.
biodb.DEBUG[2024-09-07 16:02:43.276][self$getEntryFields()$define] Define field nb.compounds.
biodb.DEBUG[2024-09-07 16:02:43.277][self$getEntryFields()$define] Define field nb.peaks.
biodb.DEBUG[2024-09-07 16:02:43.278][self$getEntryFields()$define] Define field products.
biodb.DEBUG[2024-09-07 16:02:43.279][self$getEntryFields()$define] Define field smiles.
biodb.DEBUG[2024-09-07 16:02:43.280][self$getEntryFields()$define] Define field smiles.canonical.
biodb.DEBUG[2024-09-07 16:02:43.281][self$getEntryFields()$define] Define field smiles.isomeric.
biodb.DEBUG[2024-09-07 16:02:43.282][self$getEntryFields()$define] Define field substrates.
biodb.DEBUG[2024-09-07 16:02:43.283][initialize] Created successfully new BiodbMain instance.
biodb.DEBUG[2024-09-07 16:02:43.285][initialize] This is biodb version 1.13.0.
biodb.DEBUG[2024-09-07 16:02:43.285][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-09-07 16:02:43.286][FUN] Trying to call function notifyNewObservers on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:02:43.287][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:02:43.287][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:02:43.288][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:02:43.289][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-09-07 16:02:43.289][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:02:43.290][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:02:43.290][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:02:43.291][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:02:43.292][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:02:43.292][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:02:43.293][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-09-07 16:02:43.294][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:02:43.294][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:02:43.295][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:02:43.296][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:02:43.296][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:02:43.297][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:02:43.298][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-09-07 16:02:43.298][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:02:43.299][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:02:43.299][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:02:43.300][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:02:43.301][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:02:43.301][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:02:43.302][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-09-07 16:02:43.303][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:02:43.303][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:02:43.304][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:02:43.305][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:02:43.305][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:02:43.306][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:02:43.306][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-09-07 16:02:43.307][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:02:43.308][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:02:43.308][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:02:43.309][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:02:43.310][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:02:43.310][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:02:43.311][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-09-07 16:02:43.312][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:02:43.312][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:02:43.313][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:02:43.313][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:02:43.314][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:02:43.315][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:02:43.315][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-09-07 16:02:43.316][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:02:43.317][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:02:43.317][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:02:43.318][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:02:43.319][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:02:43.319][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:02:43.320][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-09-07 16:02:43.320][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:02:43.321][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:02:43.322][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:02:43.322][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:02:43.323][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:02:43.324][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:02:43.324][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-09-07 16:02:43.325][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:02:43.325][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:02:43.326][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:02:43.327][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:02:43.327][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:02:43.328][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:02:43.329][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-09-07 16:02:43.329][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:02:43.330][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:02:43.330][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:02:43.335][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:02:43.336][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:02:43.336][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:02:43.337][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-09-07 16:02:43.338][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:02:43.338][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:02:43.339][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:02:43.339][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:02:43.340][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:02:43.341][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:02:43.341][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-09-07 16:02:43.342][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:02:43.343][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:02:43.343][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:02:43.344][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:02:43.344][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:02:43.345][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:02:43.346][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-09-07 16:02:43.346][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:02:43.347][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:02:43.347][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:02:43.348][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:02:43.349][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:02:43.349][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:02:43.350][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-09-07 16:02:43.351][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:02:43.351][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:02:43.352][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:02:43.352][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:02:43.353][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:02:43.354][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:02:43.354][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-09-07 16:02:43.355][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:02:43.356][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:02:43.356][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:02:43.357][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:02:43.358][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:02:43.358][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:02:43.359][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-09-07 16:02:43.359][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:02:43.360][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:02:43.361][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:02:43.361][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:02:43.362][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:02:43.363][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:02:43.363][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-09-07 16:02:43.364][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:02:43.365][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:02:43.365][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:02:43.366][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:02:43.366][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:02:43.367][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:02:43.369][biodb$loadDefinitions] Load definitions from file "/Users/biocbuild/bbs-3.20-bioc-longtests/meat/biodbNcbi.Rcheck/biodbNcbi/definitions.yml".
biodb.DEBUG[2024-09-07 16:02:43.370][self$getDbsInfo()$define] Define connector ncbi.ccds.
biodb.DEBUG[2024-09-07 16:02:43.372][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-09-07 16:02:43.373][self$setPropertyValue] Setting property "description" to "NCBI CCDS database.".
biodb.DEBUG[2024-09-07 16:02:43.373][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-09-07 16:02:43.374][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-09-07 16:02:43.375][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-09-07 16:02:43.376][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-09-07 16:02:43.376][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2024-09-07 16:02:43.377][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-09-07 16:02:43.378][self$setPropertyValue] Setting property "entry.content.type" to "html".
biodb.DEBUG[2024-09-07 16:02:43.378][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-09-07 16:02:43.379][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-09-07 16:02:43.380][self$setPropertyValue] Setting property "name" to "NCBI CCDS".
biodb.DEBUG[2024-09-07 16:02:43.381][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-09-07 16:02:43.381][self$setPropertyValue] Setting property "parsing.expr" to "list(attr = "value", path = "//input[@id='DATA']")".
biodb.DEBUG[2024-09-07 16:02:43.381][self$setPropertyValue] Setting property "parsing.expr" to "//b[starts-with(.,'Nucleotide Sequence')]/../tt".
biodb.DEBUG[2024-09-07 16:02:43.382][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2024-09-07 16:02:43.383][self$setPropertyValue]
biodb.DEBUG[2024-09-07 16:02:43.383][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2024-09-07 16:02:43.384][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-09-07 16:02:43.385][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-09-07 16:02:43.386][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-09-07 16:02:43.386][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-09-07 16:02:43.387][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-09-07 16:02:43.388][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-09-07 16:02:43.388][self$setPropertyValue] Setting property "urls" to "https://www.ncbi.nlm.nih.gov/CCDS/".
biodb.DEBUG[2024-09-07 16:02:43.388][self$setPropertyValue] Setting property "urls" to "https://eutils.ncbi.nlm.nih.gov/entrez/eutils".
biodb.DEBUG[2024-09-07 16:02:43.389][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-09-07 16:02:43.390][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-09-07 16:02:43.390][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2024-09-07 16:02:43.391][self$setPropertyValue]
biodb.DEBUG[2024-09-07 16:02:43.392][self$getDbsInfo()$define] Define connector ncbi.gene.
biodb.DEBUG[2024-09-07 16:02:43.393][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-09-07 16:02:43.394][self$setPropertyValue] Setting property "description" to "NCBI Gene database.".
biodb.DEBUG[2024-09-07 16:02:43.395][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-09-07 16:02:43.395][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-09-07 16:02:43.396][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-09-07 16:02:43.397][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-09-07 16:02:43.398][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2024-09-07 16:02:43.398][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-09-07 16:02:43.399][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2024-09-07 16:02:43.400][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-09-07 16:02:43.400][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-09-07 16:02:43.401][self$setPropertyValue] Setting property "name" to "NCBI Gene".
biodb.DEBUG[2024-09-07 16:02:43.402][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-09-07 16:02:43.403][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-track_geneid".
biodb.DEBUG[2024-09-07 16:02:43.403][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-ref_desc".
biodb.DEBUG[2024-09-07 16:02:43.403][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-ref_maploc".
biodb.DEBUG[2024-09-07 16:02:43.403][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-ref_locus".
biodb.DEBUG[2024-09-07 16:02:43.403][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-ref_syn_E".
biodb.DEBUG[2024-09-07 16:02:43.403][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-commentary_heading[text()='UniProtKB']/..//Dbtag_db[text()='UniProtKB/Swiss-Prot']/..//Object-id_str".
biodb.DEBUG[2024-09-07 16:02:43.403][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2024-09-07 16:02:43.404][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-09-07 16:02:43.405][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2024-09-07 16:02:43.405][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-09-07 16:02:43.406][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-09-07 16:02:43.407][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-09-07 16:02:43.408][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-09-07 16:02:43.408][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-09-07 16:02:43.409][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-09-07 16:02:43.410][self$setPropertyValue] Setting property "urls" to "https://www.ncbi.nlm.nih.gov/".
biodb.DEBUG[2024-09-07 16:02:43.410][self$setPropertyValue] Setting property "urls" to "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/".
biodb.DEBUG[2024-09-07 16:02:43.410][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-09-07 16:02:43.411][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-09-07 16:02:43.412][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2024-09-07 16:02:43.416][self$setPropertyValue]
biodb.DEBUG[2024-09-07 16:02:43.417][self$getDbsInfo()$define] Define connector ncbi.pubchem.comp.
biodb.DEBUG[2024-09-07 16:02:43.418][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-09-07 16:02:43.419][self$setPropertyValue] Setting property "description" to "PubChem Compound database.".
biodb.DEBUG[2024-09-07 16:02:43.420][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-09-07 16:02:43.420][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-09-07 16:02:43.421][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-09-07 16:02:43.422][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-09-07 16:02:43.423][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2024-09-07 16:02:43.423][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-09-07 16:02:43.424][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2024-09-07 16:02:43.425][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-09-07 16:02:43.425][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-09-07 16:02:43.426][self$setPropertyValue] Setting property "name" to "PubChem Compound".
biodb.DEBUG[2024-09-07 16:02:43.427][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-09-07 16:02:43.427][self$setPropertyValue] Setting property "parsing.expr" to "//PC-CompoundType_id_cid".
biodb.DEBUG[2024-09-07 16:02:43.427][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='IUPAC Name']/../PC-Urn_name[text()='Allowed']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-09-07 16:02:43.427][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='IUPAC Name']/../PC-Urn_name[text()='CAS-like Style']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-09-07 16:02:43.427][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='IUPAC Name']/../PC-Urn_name[text()='Preferred']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-09-07 16:02:43.427][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='IUPAC Name']/../PC-Urn_name[text()='Systematic']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-09-07 16:02:43.427][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='IUPAC Name']/../PC-Urn_name[text()='Traditional']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-09-07 16:02:43.427][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='Mass']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-09-07 16:02:43.427][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='Molecular Formula']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-09-07 16:02:43.427][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='InChI']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-09-07 16:02:43.427][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='InChIKey']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-09-07 16:02:43.427][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='Log P']/../../..//PC-InfoData_value_fval".
biodb.DEBUG[2024-09-07 16:02:43.427][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='Molecular Weight']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-09-07 16:02:43.427][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='SMILES']/../PC-Urn_name[text()='Canonical']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-09-07 16:02:43.427][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='SMILES']/../PC-Urn_name[text()='Isomeric']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-09-07 16:02:43.428][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2024-09-07 16:02:43.429][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-09-07 16:02:43.429][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2024-09-07 16:02:43.429][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2024-09-07 16:02:43.430][self$setPropertyValue] Setting property "scheduler.n" to "5".
biodb.DEBUG[2024-09-07 16:02:43.430][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-09-07 16:02:43.431][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-09-07 16:02:43.432][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-09-07 16:02:43.432][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-09-07 16:02:43.433][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-09-07 16:02:43.434][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-09-07 16:02:43.434][self$setPropertyValue] Setting property "urls" to "https://pubchem.ncbi.nlm.nih.gov/".
biodb.DEBUG[2024-09-07 16:02:43.434][self$setPropertyValue] Setting property "urls" to "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/".
biodb.DEBUG[2024-09-07 16:02:43.434][self$setPropertyValue] Setting property "urls" to "https://pubchem.ncbi.nlm.nih.gov/rest/pug/".
biodb.DEBUG[2024-09-07 16:02:43.435][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-09-07 16:02:43.436][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-09-07 16:02:43.436][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2024-09-07 16:02:43.437][self$setPropertyValue] Setting property "xml.ns" to "http://www.ncbi.nlm.nih.gov".
biodb.DEBUG[2024-09-07 16:02:43.438][self$getDbsInfo()$define] Define connector ncbi.pubchem.subst.
biodb.DEBUG[2024-09-07 16:02:43.439][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-09-07 16:02:43.440][self$setPropertyValue] Setting property "description" to "PubChem Substance database.".
biodb.DEBUG[2024-09-07 16:02:43.441][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-09-07 16:02:43.442][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-09-07 16:02:43.442][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-09-07 16:02:43.443][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-09-07 16:02:43.444][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2024-09-07 16:02:43.444][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-09-07 16:02:43.445][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2024-09-07 16:02:43.446][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-09-07 16:02:43.446][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-09-07 16:02:43.447][self$setPropertyValue] Setting property "name" to "PubChem Substance".
biodb.DEBUG[2024-09-07 16:02:43.448][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-09-07 16:02:43.449][self$setPropertyValue] Setting property "parsing.expr" to "//PC-ID_id".
biodb.DEBUG[2024-09-07 16:02:43.449][self$setPropertyValue] Setting property "parsing.expr" to "//PC-CompoundType_id_cid".
biodb.DEBUG[2024-09-07 16:02:43.449][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2024-09-07 16:02:43.450][self$setPropertyValue]
biodb.DEBUG[2024-09-07 16:02:43.451][self$setPropertyValue] Setting property "scheduler.n" to "5".
biodb.DEBUG[2024-09-07 16:02:43.451][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-09-07 16:02:43.452][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-09-07 16:02:43.453][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-09-07 16:02:43.454][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-09-07 16:02:43.454][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-09-07 16:02:43.455][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-09-07 16:02:43.456][self$setPropertyValue] Setting property "urls" to "https://pubchem.ncbi.nlm.nih.gov/".
biodb.DEBUG[2024-09-07 16:02:43.456][self$setPropertyValue] Setting property "urls" to "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/".
biodb.DEBUG[2024-09-07 16:02:43.456][self$setPropertyValue] Setting property "urls" to "https://pubchem.ncbi.nlm.nih.gov/rest/pug/".
biodb.DEBUG[2024-09-07 16:02:43.456][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-09-07 16:02:43.457][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-09-07 16:02:43.458][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2024-09-07 16:02:43.458][self$setPropertyValue] Setting property "xml.ns" to "http://www.ncbi.nlm.nih.gov".
biodb.DEBUG[2024-09-07 16:02:43.459][self$getEntryFields()$define] Define field ncbi.ccds.id.
biodb.DEBUG[2024-09-07 16:02:43.460][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2024-09-07 16:02:43.462][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2024-09-07 16:02:43.463][self$getEntryFields()$define] Define field ncbi.pubchem.subst.id.
biodb.DEBUG[2024-09-07 16:02:43.464][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2024-09-07 16:02:43.465][self$getEntryFields()$define] Define field uniprot.id.
biodb.DEBUG[2024-09-07 16:02:43.471][super$initialize] Initialize connector ncbi.gene.
biodb.DEBUG[2024-09-07 16:02:43.472][super$initialize] Register connector ncbi.gene with the request scheduler
biodb.DEBUG[2024-09-07 16:02:43.472][private$bdb$getRequestScheduler()$re ...] Register connector ncbi.gene.
biodb.DEBUG[2024-09-07 16:02:43.474][private$addConnectorRules] Create new rule for URL "www.ncbi.nlm.nih.gov" of connector "ncbi.gene".
biodb.DEBUG[2024-09-07 16:02:43.474][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-09-07 16:02:43.475][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-09-07 16:02:43.476][private$addConnectorRules] Create new rule for URL "eutils.ncbi.nlm.nih.gov" of connector "ncbi.gene".
biodb.DEBUG[2024-09-07 16:02:43.477][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-09-07 16:02:43.478][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-09-07 16:02:43.528][biodb$getFactory()$createConn] Creating new connector ncbi.gene for database class ncbi.gene .
biodb.INFO [2024-09-07 16:02:43.531][biodb::testThat]
biodb.INFO [2024-09-07 16:02:43.532][biodb::testThat] Running test function  test.entry.fields  (" Entry fields have a correct value ").
biodb.INFO [2024-09-07 16:02:43.533][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-09-07 16:02:43.533][biodb::testThat]
biodb.TRACE[2024-09-07 16:02:43.538][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/bbs-3.20-bioc-longtests/meat/biodbNcbi.Rcheck/biodbNcbi/testref/entry-ncbi.gene-2833-content.xml".
biodb.DEBUG[2024-09-07 16:02:43.539][biodb$getFactory()$createEntryFromCo ...] Creating NCBI Gene entries from 1 content(s).
biodb.DEBUG[2024-09-07 16:02:43.542][biodb$getFactory()$createEntryFromCo ...] Parsing 1 NCBI Gene entries.
biodb.DEBUG[2024-09-07 16:02:43.543][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:02:43.544][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:02:43.544][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:02:43.549][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:02:43.550][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:02:43.550][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:02:43.551][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:02:43.561][ef$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:02:43.562][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:02:43.562][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:43.563][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:43.564][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:02:43.565][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:02:43.566][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:43.566][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:43.567][ef$get] Asked field names are: description.
biodb.TRACE[2024-09-07 16:02:43.568][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-09-07 16:02:43.569][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:43.570][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:43.571][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-09-07 16:02:43.572][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-09-07 16:02:43.572][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:43.573][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:43.574][ef$get] Asked field names are: location.
biodb.TRACE[2024-09-07 16:02:43.575][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-09-07 16:02:43.575][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:43.576][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:43.577][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2024-09-07 16:02:43.578][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-09-07 16:02:43.579][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:43.580][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:43.581][ef$get] Asked field names are: symbol.
biodb.TRACE[2024-09-07 16:02:43.581][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-09-07 16:02:43.582][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:43.588][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:43.589][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2024-09-07 16:02:43.590][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-09-07 16:02:43.590][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:43.591][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:43.592][ef$get] Asked field names are: synonyms.
biodb.TRACE[2024-09-07 16:02:43.593][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:02:43.594][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:43.594][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:43.595][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2024-09-07 16:02:43.596][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:02:43.597][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:43.598][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:43.598][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-09-07 16:02:43.599][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-09-07 16:02:43.600][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:43.600][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:43.602][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-09-07 16:02:43.603][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-09-07 16:02:43.604][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:43.605][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:43.608][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-09-07 16:02:43.609][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-09-07 16:02:43.610][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:43.610][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:43.611][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-09-07 16:02:43.612][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-09-07 16:02:43.613][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:43.613][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:43.614][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-09-07 16:02:43.615][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-09-07 16:02:43.616][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:43.616][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:43.617][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:02:43.618][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:02:43.618][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:43.619][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:43.620][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-09-07 16:02:43.621][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-09-07 16:02:43.621][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:43.622][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:43.623][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:02:43.624][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:02:43.624][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:43.625][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:43.626][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:02:43.626][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:02:43.627][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:43.628][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:43.629][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:02:43.629][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:02:43.630][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:43.631][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:43.632][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:02:43.632][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:02:43.633][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:43.634][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:43.635][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:02:43.635][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:02:43.636][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:43.637][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:43.637][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:02:43.638][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:02:43.639][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:43.640][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:02:43.640][biodb$getFactory()$createEntryFromCo ...] Accession numbers: 2833.
biodb.TRACE[2024-09-07 16:02:43.642][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-09-07 16:02:43.643][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-09-07 16:02:43.644][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:43.644][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:43.645][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-09-07 16:02:43.646][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-09-07 16:02:43.647][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:43.648][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:43.648][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-09-07 16:02:43.649][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-09-07 16:02:43.650][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:43.651][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:43.651][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-09-07 16:02:43.652][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-09-07 16:02:43.653][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:43.653][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:43.654][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-09-07 16:02:43.655][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-09-07 16:02:43.656][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:43.656][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:02:43.657][private$computeField] Compute value for field "aa.seq".
biodb.DEBUG[2024-09-07 16:02:43.682][initialize] Initialize connector ncbi.ccds.
biodb.DEBUG[2024-09-07 16:02:43.682][initialize] Register connector ncbi.ccds with the request scheduler
biodb.DEBUG[2024-09-07 16:02:43.683][private$bdb$getRequestScheduler()$re ...] Register connector ncbi.ccds.
biodb.DEBUG[2024-09-07 16:02:43.695][self$recomputeFrequency] t.conn=1.000000, n.conn=3.000000
biodb.DEBUG[2024-09-07 16:02:43.696][self$recomputeFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-09-07 16:02:43.696][self$recomputeFrequency] t.conn=1.000000, n.conn=3.000000
biodb.DEBUG[2024-09-07 16:02:43.705][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-09-07 16:02:43.706][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-09-07 16:02:43.707][self$recomputeFrequency] t.conn=1.000000, n.conn=3.000000
biodb.DEBUG[2024-09-07 16:02:43.707][self$recomputeFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-09-07 16:02:43.708][self$recomputeFrequency] t.conn=1.000000, n.conn=3.000000
biodb.DEBUG[2024-09-07 16:02:43.709][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-09-07 16:02:43.710][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-09-07 16:02:43.723][self$createConn] Creating new connector ncbi.ccds for database class ncbi.ccds .
biodb.DEBUG[2024-09-07 16:02:43.724][private$loadEntries] Creating entries from ids [1]: "CCDS14416.1".
biodb.DEBUG[2024-09-07 16:02:43.725][conn$getEntryContent] Get NCBI CCDS entry content(s) for 1 id(s)...
biodb.TRACE[2024-09-07 16:02:43.727][cch$loadFileContent] Trying to load 1 files from cache: [1]: "CCDS14416.1".
biodb.TRACE[2024-09-07 16:02:43.728][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-09-07 16:02:43.730][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/CCDS14416.1.html".
biodb.DEBUG[2024-09-07 16:02:43.731][conn$getEntryContent] 1 NCBI CCDS entry content(s) loaded from cache.
biodb.DEBUG[2024-09-07 16:02:43.732][self$createEntryFromContent] Creating NCBI CCDS entries from 1 content(s).
biodb.DEBUG[2024-09-07 16:02:43.733][self$createEntryFromContent] Parsing 1 NCBI CCDS entries.
biodb.DEBUG[2024-09-07 16:02:43.734][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:02:43.734][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:02:43.735][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:02:43.739][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:02:43.740][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:02:43.740][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:02:43.741][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:02:43.752][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:02:43.753][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:02:43.753][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:43.754][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:43.755][ef$get] Asked field names are: sequence.
biodb.TRACE[2024-09-07 16:02:43.756][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-09-07 16:02:43.756][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:43.757][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:43.758][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2024-09-07 16:02:43.759][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-09-07 16:02:43.760][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:43.760][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:43.761][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-09-07 16:02:43.762][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-09-07 16:02:43.763][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:43.763][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:43.764][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-09-07 16:02:43.765][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-09-07 16:02:43.765][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:43.766][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:43.767][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:02:43.768][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:02:43.768][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:43.769][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:43.770][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-09-07 16:02:43.770][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-09-07 16:02:43.771][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:43.772][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:43.773][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:02:43.773][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:02:43.774][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:43.775][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:43.775][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:02:43.776][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:02:43.777][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:43.778][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:43.779][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:02:43.779][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:02:43.780][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:43.781][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:43.782][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:02:43.782][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:02:43.783][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:43.784][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:43.785][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:02:43.786][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:02:43.786][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:43.787][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:43.788][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:02:43.789][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:02:43.789][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:43.790][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:02:43.791][self$createEntryFromContent] Accession numbers: CCDS14416.1.
biodb.TRACE[2024-09-07 16:02:43.792][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-09-07 16:02:43.792][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-09-07 16:02:43.793][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:43.794][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:43.795][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-09-07 16:02:43.795][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-09-07 16:02:43.796][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:43.797][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:43.798][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-09-07 16:02:43.804][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-09-07 16:02:43.805][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:43.805][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:43.806][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-09-07 16:02:43.807][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-09-07 16:02:43.808][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:43.808][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:43.809][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-09-07 16:02:43.810][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-09-07 16:02:43.810][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:43.811][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:43.812][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-09-07 16:02:43.812][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-09-07 16:02:43.813][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:43.814][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:43.814][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-09-07 16:02:43.815][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-09-07 16:02:43.816][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:43.817][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:43.818][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:02:43.819][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:02:43.819][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:43.820][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:43.824][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-09-07 16:02:43.825][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-09-07 16:02:43.826][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:43.827][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:43.831][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:02:43.832][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:02:43.832][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:43.833][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:43.834][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:02:43.835][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:02:43.835][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:43.836][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:43.837][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:02:43.838][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:02:43.838][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:43.839][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:43.841][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:02:43.842][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:02:43.843][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:43.843][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:43.844][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:02:43.845][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:02:43.846][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:43.846][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:43.847][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:02:43.848][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:02:43.849][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:43.849][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:43.850][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-09-07 16:02:43.851][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-09-07 16:02:43.852][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:43.853][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:43.854][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-09-07 16:02:43.854][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-09-07 16:02:43.855][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:43.856][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:43.857][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-09-07 16:02:43.858][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-09-07 16:02:43.858][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:43.859][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:43.865][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:02:43.866][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:02:43.867][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:43.868][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:43.868][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:02:43.869][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:02:43.870][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:43.871][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:43.871][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:02:43.872][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:02:43.873][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:43.874][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:43.875][ef$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:02:43.875][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:02:43.876][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:43.877][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:43.878][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:02:43.878][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:02:43.911][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:43.912][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:43.920][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2024-09-07 16:02:43.921][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-09-07 16:02:43.921][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:43.922][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:43.923][self$getBiodb()$getEntryFields()$get] Asked field names are: gene.symbol.
biodb.TRACE[2024-09-07 16:02:43.924][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-09-07 16:02:43.924][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:43.925][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:43.926][self$getBiodb()$getEntryFields()$get] Asked field names are: gene.symbol.
biodb.TRACE[2024-09-07 16:02:43.927][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-09-07 16:02:43.927][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:43.928][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:43.929][ef$get] Asked field names are: symbol.
biodb.TRACE[2024-09-07 16:02:43.929][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-09-07 16:02:43.930][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:43.931][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:43.932][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2024-09-07 16:02:43.932][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-09-07 16:02:43.933][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:43.934][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:43.941][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2024-09-07 16:02:43.942][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-09-07 16:02:43.942][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:43.943][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:43.944][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.location.
biodb.TRACE[2024-09-07 16:02:43.945][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-09-07 16:02:43.945][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:43.946][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:43.947][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.location.
biodb.TRACE[2024-09-07 16:02:43.948][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-09-07 16:02:43.948][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:43.949][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:43.950][ef$get] Asked field names are: location.
biodb.TRACE[2024-09-07 16:02:43.951][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-09-07 16:02:43.951][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:43.952][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:43.953][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2024-09-07 16:02:43.954][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-09-07 16:02:43.954][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:43.955][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:43.963][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-09-07 16:02:43.963][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-09-07 16:02:43.964][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:43.965][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:43.965][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-09-07 16:02:43.966][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-09-07 16:02:43.967][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:43.968][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:43.968][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-09-07 16:02:43.969][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-09-07 16:02:43.970][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:43.971][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:43.971][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-09-07 16:02:43.972][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-09-07 16:02:43.973][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:43.973][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:43.974][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-09-07 16:02:43.975][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-09-07 16:02:43.976][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:43.976][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:43.984][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-09-07 16:02:43.985][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-09-07 16:02:43.985][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:43.986][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:43.987][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-09-07 16:02:43.988][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-09-07 16:02:43.992][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:43.993][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:43.994][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-09-07 16:02:43.995][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-09-07 16:02:43.996][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:43.996][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:43.997][ef$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-09-07 16:02:43.998][ef$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-09-07 16:02:43.998][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:43.999][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:44.000][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-09-07 16:02:44.000][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-09-07 16:02:44.001][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:44.002][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:44.009][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-09-07 16:02:44.010][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-09-07 16:02:44.010][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:44.011][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:44.012][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-09-07 16:02:44.013][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-09-07 16:02:44.013][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:44.014][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:44.015][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-09-07 16:02:44.015][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-09-07 16:02:44.016][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:44.017][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:44.018][ef$get] Asked field names are: description.
biodb.TRACE[2024-09-07 16:02:44.018][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-09-07 16:02:44.019][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:44.020][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:44.021][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-09-07 16:02:44.021][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-09-07 16:02:44.022][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:44.023][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:44.030][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2024-09-07 16:02:44.031][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:02:44.032][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:44.032][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:44.033][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:02:44.034][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:02:44.034][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:44.035][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:44.036][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:02:44.037][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:02:44.037][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:44.038][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:44.039][ef$get] Asked field names are: synonyms.
biodb.TRACE[2024-09-07 16:02:44.040][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:02:44.040][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:44.041][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:44.042][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2024-09-07 16:02:44.043][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:02:44.043][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:44.044][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:44.051][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2024-09-07 16:02:44.052][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-09-07 16:02:44.053][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:44.053][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:44.054][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-09-07 16:02:44.055][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-09-07 16:02:44.055][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:44.056][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:44.057][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-09-07 16:02:44.058][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-09-07 16:02:44.058][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:44.059][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:44.060][ef$get] Asked field names are: sequence.
biodb.TRACE[2024-09-07 16:02:44.060][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-09-07 16:02:44.061][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:44.062][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:44.063][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2024-09-07 16:02:44.064][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-09-07 16:02:44.064][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:44.065][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:44.077][ef$get] Asked field names are: aa.seq.
biodb.TRACE[2024-09-07 16:02:44.077][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-09-07 16:02:44.078][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:44.079][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:44.083][ef$get] Asked field names are: aa.seq.location.
biodb.TRACE[2024-09-07 16:02:44.084][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-09-07 16:02:44.084][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:44.085][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:44.089][ef$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:02:44.089][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:02:44.090][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:44.091][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:44.095][ef$get] Asked field names are: description.
biodb.TRACE[2024-09-07 16:02:44.095][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-09-07 16:02:44.096][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:44.097][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:44.101][ef$get] Asked field names are: gene.symbol.
biodb.TRACE[2024-09-07 16:02:44.101][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-09-07 16:02:44.102][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:44.103][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:44.106][ef$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:02:44.107][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:02:44.108][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:44.109][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:44.112][ef$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-09-07 16:02:44.113][ef$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-09-07 16:02:44.114][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:44.114][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:44.118][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-09-07 16:02:44.119][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-09-07 16:02:44.120][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:44.120][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:44.127][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/bbs-3.20-bioc-longtests/meat/biodbNcbi.Rcheck/biodbNcbi/testref/entry-ncbi.gene-3002-content.xml".
biodb.DEBUG[2024-09-07 16:02:44.128][biodb$getFactory()$createEntryFromCo ...] Creating NCBI Gene entries from 1 content(s).
biodb.DEBUG[2024-09-07 16:02:44.129][biodb$getFactory()$createEntryFromCo ...] Parsing 1 NCBI Gene entries.
biodb.DEBUG[2024-09-07 16:02:44.130][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:02:44.130][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:02:44.131][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:02:44.135][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:02:44.135][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:02:44.136][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:02:44.137][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:02:44.145][ef$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:02:44.146][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:02:44.147][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:44.148][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:44.149][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:02:44.150][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:02:44.150][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:44.151][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:44.152][ef$get] Asked field names are: description.
biodb.TRACE[2024-09-07 16:02:44.153][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-09-07 16:02:44.153][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:44.154][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:44.155][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-09-07 16:02:44.156][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-09-07 16:02:44.157][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:44.157][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:44.158][ef$get] Asked field names are: location.
biodb.TRACE[2024-09-07 16:02:44.163][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-09-07 16:02:44.164][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:44.165][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:44.166][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2024-09-07 16:02:44.167][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-09-07 16:02:44.168][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:44.168][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:44.169][ef$get] Asked field names are: symbol.
biodb.TRACE[2024-09-07 16:02:44.170][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-09-07 16:02:44.171][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:44.172][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:44.173][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2024-09-07 16:02:44.173][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-09-07 16:02:44.174][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:44.175][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:44.176][ef$get] Asked field names are: synonyms.
biodb.TRACE[2024-09-07 16:02:44.176][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:02:44.177][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:44.178][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:44.179][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2024-09-07 16:02:44.180][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:02:44.181][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:44.181][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:44.182][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-09-07 16:02:44.183][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-09-07 16:02:44.183][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:44.184][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:44.186][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-09-07 16:02:44.187][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-09-07 16:02:44.187][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:44.188][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:44.191][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-09-07 16:02:44.192][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-09-07 16:02:44.192][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:44.193][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:44.194][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-09-07 16:02:44.195][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-09-07 16:02:44.195][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:44.196][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:44.197][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-09-07 16:02:44.197][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-09-07 16:02:44.198][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:44.199][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:44.200][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:02:44.200][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:02:44.201][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:44.202][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:44.202][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-09-07 16:02:44.203][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-09-07 16:02:44.204][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:44.205][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:44.205][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:02:44.206][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:02:44.207][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:44.207][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:44.208][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:02:44.209][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:02:44.210][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:44.210][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:44.211][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:02:44.212][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:02:44.212][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:44.213][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:44.214][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:02:44.215][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:02:44.215][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:44.216][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:44.217][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:02:44.218][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:02:44.218][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:44.219][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:44.220][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:02:44.221][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:02:44.221][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:44.222][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:02:44.223][biodb$getFactory()$createEntryFromCo ...] Accession numbers: 3002.
biodb.TRACE[2024-09-07 16:02:44.224][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-09-07 16:02:44.225][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-09-07 16:02:44.226][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:44.226][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:44.227][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-09-07 16:02:44.228][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-09-07 16:02:44.229][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:44.229][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:44.230][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-09-07 16:02:44.231][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-09-07 16:02:44.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:44.233][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:44.233][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-09-07 16:02:44.234][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-09-07 16:02:44.235][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:44.236][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:44.236][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-09-07 16:02:44.237][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-09-07 16:02:44.242][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:44.243][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:02:44.244][private$computeField] Compute value for field "aa.seq".
biodb.DEBUG[2024-09-07 16:02:44.245][private$loadEntries] Creating entries from ids [1]: "CCDS9633.1".
biodb.DEBUG[2024-09-07 16:02:44.276][conn$getEntryContent] Get NCBI CCDS entry content(s) for 1 id(s)...
biodb.TRACE[2024-09-07 16:02:44.287][cch$loadFileContent] Trying to load 1 files from cache: [1]: "CCDS9633.1".
biodb.TRACE[2024-09-07 16:02:44.289][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-09-07 16:02:44.289][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-09-07 16:02:44.290][conn$getEntryContent] 0 NCBI CCDS entry content(s) loaded from cache.
biodb.DEBUG[2024-09-07 16:02:44.291][conn$getEntryContent] 1 entry content(s) need to be fetched from NCBI CCDS database "https://www.ncbi.nlm.nih.gov/CCDS/".
biodb.DEBUG[2024-09-07 16:02:44.292][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-09-07 16:02:44.293][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-09-07 16:02:44.297][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:02:44.297][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:02:44.302][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:02:44.307][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:02:44.307][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:02:44.308][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:02:44.309][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:02:44.310][scheduler$sendRequest] Getting content of get URL request "https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS9633.1".
biodb.DEBUG[2024-09-07 16:02:44.323][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-09-07 16:02:44.324][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-09-07 16:02:44.325][private$doSendRequestOnce] Sent URL is "https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS9633.1".
biodb.TRACE[2024-09-07 16:02:45.704][getRCurlRequestResult] Using RCurl package for sending request (https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS9633.1).
biodb.DEBUG[2024-09-07 16:02:47.046][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-09-07 16:02:47.048][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/0813c5529d43ad5ef4f2c9b16d66e613.content"
biodb.TRACE[2024-09-07 16:02:47.059][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/0813c5529d43ad5ef4f2c9b16d66e613.request"
biodb.TRACE[2024-09-07 16:02:47.062][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/CCDS9633.1.html"
biodb.DEBUG[2024-09-07 16:02:47.063][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-09-07 16:02:47.064][self$createEntryFromContent] Creating NCBI CCDS entries from 1 content(s).
biodb.DEBUG[2024-09-07 16:02:47.065][self$createEntryFromContent] Parsing 1 NCBI CCDS entries.
biodb.DEBUG[2024-09-07 16:02:47.066][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:02:47.067][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:02:47.068][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:02:47.072][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:02:47.073][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:02:47.073][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:02:47.074][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:02:47.085][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:02:47.085][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:02:47.086][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:47.087][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:47.088][ef$get] Asked field names are: sequence.
biodb.TRACE[2024-09-07 16:02:47.088][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-09-07 16:02:47.089][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:47.090][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:47.091][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2024-09-07 16:02:47.098][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-09-07 16:02:47.099][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:47.100][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:47.101][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-09-07 16:02:47.102][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-09-07 16:02:47.102][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:47.103][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:47.104][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-09-07 16:02:47.104][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-09-07 16:02:47.105][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:47.106][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:47.106][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:02:47.107][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:02:47.108][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:47.108][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:47.109][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-09-07 16:02:47.110][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-09-07 16:02:47.111][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:47.112][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:47.112][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:02:47.113][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:02:47.114][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:47.115][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:47.115][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:02:47.116][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:02:47.117][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:47.117][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:47.118][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:02:47.119][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:02:47.120][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:47.121][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:47.122][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:02:47.122][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:02:47.123][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:47.124][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:47.125][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:02:47.125][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:02:47.126][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:47.127][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:47.127][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:02:47.128][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:02:47.129][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:47.130][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:02:47.130][self$createEntryFromContent] Accession numbers: CCDS9633.1.
biodb.TRACE[2024-09-07 16:02:47.137][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-09-07 16:02:47.138][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-09-07 16:02:47.139][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:47.140][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:47.140][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-09-07 16:02:47.141][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-09-07 16:02:47.142][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:47.143][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:47.143][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-09-07 16:02:47.144][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-09-07 16:02:47.145][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:47.146][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:47.146][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-09-07 16:02:47.147][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-09-07 16:02:47.148][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:47.149][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:47.149][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-09-07 16:02:47.150][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-09-07 16:02:47.151][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:47.152][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:47.152][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-09-07 16:02:47.153][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-09-07 16:02:47.154][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:47.155][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:47.155][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-09-07 16:02:47.156][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-09-07 16:02:47.157][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:47.158][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:47.159][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:02:47.160][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:02:47.160][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:47.161][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:47.166][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-09-07 16:02:47.166][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-09-07 16:02:47.171][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:47.172][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:47.176][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:02:47.177][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:02:47.177][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:47.178][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:47.179][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:02:47.179][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:02:47.180][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:47.181][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:47.181][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:02:47.182][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:02:47.183][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:47.183][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:47.185][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:02:47.186][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:02:47.187][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:47.187][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:47.188][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:02:47.189][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:02:47.189][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:47.190][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:47.191][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:02:47.191][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:02:47.192][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:47.193][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:47.194][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-09-07 16:02:47.195][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-09-07 16:02:47.195][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:47.196][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:47.197][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-09-07 16:02:47.198][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-09-07 16:02:47.198][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:47.199][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:47.200][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-09-07 16:02:47.200][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-09-07 16:02:47.201][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:47.202][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:47.207][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:02:47.208][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:02:47.209][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:47.210][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:47.210][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:02:47.211][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:02:47.212][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:47.212][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:47.213][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:02:47.214][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:02:47.215][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:47.215][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:47.216][ef$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:02:47.217][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:02:47.218][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:47.218][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:47.219][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:02:47.220][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:02:47.221][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:47.221][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:47.228][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2024-09-07 16:02:47.229][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-09-07 16:02:47.230][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:47.231][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:47.231][self$getBiodb()$getEntryFields()$get] Asked field names are: gene.symbol.
biodb.TRACE[2024-09-07 16:02:47.232][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-09-07 16:02:47.233][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:47.233][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:47.234][self$getBiodb()$getEntryFields()$get] Asked field names are: gene.symbol.
biodb.TRACE[2024-09-07 16:02:47.235][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-09-07 16:02:47.236][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:47.236][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:47.237][ef$get] Asked field names are: symbol.
biodb.TRACE[2024-09-07 16:02:47.238][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-09-07 16:02:47.238][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:47.239][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:47.240][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2024-09-07 16:02:47.245][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-09-07 16:02:47.246][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:47.246][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:47.254][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2024-09-07 16:02:47.254][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-09-07 16:02:47.255][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:47.256][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:47.256][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.location.
biodb.TRACE[2024-09-07 16:02:47.257][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-09-07 16:02:47.258][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:47.258][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:47.259][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.location.
biodb.TRACE[2024-09-07 16:02:47.260][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-09-07 16:02:47.261][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:47.261][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:47.262][ef$get] Asked field names are: location.
biodb.TRACE[2024-09-07 16:02:47.263][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-09-07 16:02:47.263][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:47.264][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:47.265][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2024-09-07 16:02:47.265][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-09-07 16:02:47.266][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:47.267][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:47.274][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-09-07 16:02:47.274][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-09-07 16:02:47.275][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:47.276][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:47.277][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-09-07 16:02:47.277][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-09-07 16:02:47.278][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:47.279][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:47.279][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-09-07 16:02:47.280][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-09-07 16:02:47.281][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:47.282][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:47.282][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-09-07 16:02:47.283][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-09-07 16:02:47.284][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:47.284][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:47.285][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-09-07 16:02:47.286][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-09-07 16:02:47.287][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:47.287][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:47.294][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-09-07 16:02:47.295][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-09-07 16:02:47.296][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:47.297][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:47.297][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-09-07 16:02:47.298][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-09-07 16:02:47.299][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:47.300][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:47.300][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-09-07 16:02:47.301][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-09-07 16:02:47.302][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:47.303][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:47.303][ef$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-09-07 16:02:47.304][ef$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-09-07 16:02:47.305][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:47.306][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:47.306][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-09-07 16:02:47.307][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-09-07 16:02:47.308][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:47.308][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:47.320][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-09-07 16:02:47.321][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-09-07 16:02:47.322][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:47.323][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:47.323][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-09-07 16:02:47.324][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-09-07 16:02:47.325][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:47.326][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:47.326][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-09-07 16:02:47.327][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-09-07 16:02:47.328][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:47.328][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:47.329][ef$get] Asked field names are: description.
biodb.TRACE[2024-09-07 16:02:47.330][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-09-07 16:02:47.331][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:47.331][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:47.332][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-09-07 16:02:47.333][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-09-07 16:02:47.334][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:47.334][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:47.341][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2024-09-07 16:02:47.342][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:02:47.342][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:47.343][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:47.344][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:02:47.345][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:02:47.345][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:47.346][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:47.347][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:02:47.347][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:02:47.348][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:47.349][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:47.349][ef$get] Asked field names are: synonyms.
biodb.TRACE[2024-09-07 16:02:47.350][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:02:47.351][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:47.352][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:47.352][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2024-09-07 16:02:47.353][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:02:47.354][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:47.354][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:47.361][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2024-09-07 16:02:47.362][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-09-07 16:02:47.363][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:47.363][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:47.364][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-09-07 16:02:47.365][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-09-07 16:02:47.366][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:47.366][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:47.367][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-09-07 16:02:47.368][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-09-07 16:02:47.369][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:47.370][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:47.370][ef$get] Asked field names are: sequence.
biodb.TRACE[2024-09-07 16:02:47.371][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-09-07 16:02:47.372][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:47.372][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:47.373][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2024-09-07 16:02:47.374][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-09-07 16:02:47.375][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:47.375][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:47.382][ef$get] Asked field names are: aa.seq.
biodb.TRACE[2024-09-07 16:02:47.383][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-09-07 16:02:47.384][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:47.384][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:47.388][ef$get] Asked field names are: aa.seq.location.
biodb.TRACE[2024-09-07 16:02:47.389][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-09-07 16:02:47.390][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:47.395][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:47.399][ef$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:02:47.400][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:02:47.400][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:47.401][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:47.405][ef$get] Asked field names are: description.
biodb.TRACE[2024-09-07 16:02:47.406][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-09-07 16:02:47.406][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:47.407][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:47.411][ef$get] Asked field names are: gene.symbol.
biodb.TRACE[2024-09-07 16:02:47.411][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-09-07 16:02:47.412][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:47.413][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:47.417][ef$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:02:47.417][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:02:47.418][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:47.419][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:47.423][ef$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-09-07 16:02:47.423][ef$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-09-07 16:02:47.424][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:47.425][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:47.429][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-09-07 16:02:47.429][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-09-07 16:02:47.430][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:47.431][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:47.439][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/bbs-3.20-bioc-longtests/meat/biodbNcbi.Rcheck/biodbNcbi/testref/entry-ncbi.gene-3627-content.xml".
biodb.DEBUG[2024-09-07 16:02:47.440][biodb$getFactory()$createEntryFromCo ...] Creating NCBI Gene entries from 1 content(s).
biodb.DEBUG[2024-09-07 16:02:47.441][biodb$getFactory()$createEntryFromCo ...] Parsing 1 NCBI Gene entries.
biodb.DEBUG[2024-09-07 16:02:47.442][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:02:47.443][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:02:47.444][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:02:47.447][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:02:47.448][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:02:47.449][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:02:47.449][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:02:47.465][ef$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:02:47.466][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:02:47.467][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:47.468][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:47.469][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:02:47.470][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:02:47.471][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:47.471][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:47.472][ef$get] Asked field names are: description.
biodb.TRACE[2024-09-07 16:02:47.473][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-09-07 16:02:47.474][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:47.474][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:47.476][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-09-07 16:02:47.477][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-09-07 16:02:47.477][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:47.478][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:47.479][ef$get] Asked field names are: location.
biodb.TRACE[2024-09-07 16:02:47.480][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-09-07 16:02:47.480][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:47.481][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:47.483][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2024-09-07 16:02:47.483][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-09-07 16:02:47.484][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:47.485][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:47.486][ef$get] Asked field names are: symbol.
biodb.TRACE[2024-09-07 16:02:47.486][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-09-07 16:02:47.487][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:47.488][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:47.493][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2024-09-07 16:02:47.494][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-09-07 16:02:47.495][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:47.496][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:47.497][ef$get] Asked field names are: synonyms.
biodb.TRACE[2024-09-07 16:02:47.498][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:02:47.498][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:47.499][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:47.501][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2024-09-07 16:02:47.501][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:02:47.502][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:47.503][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:47.503][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-09-07 16:02:47.504][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-09-07 16:02:47.505][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:47.505][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:47.508][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-09-07 16:02:47.509][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-09-07 16:02:47.510][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:47.510][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:47.513][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-09-07 16:02:47.513][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-09-07 16:02:47.514][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:47.515][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:47.516][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-09-07 16:02:47.516][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-09-07 16:02:47.517][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:47.518][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:47.519][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-09-07 16:02:47.519][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-09-07 16:02:47.520][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:47.521][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:47.521][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:02:47.522][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:02:47.523][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:47.524][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:47.524][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-09-07 16:02:47.525][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-09-07 16:02:47.526][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:47.526][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:47.527][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:02:47.528][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:02:47.529][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:47.529][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:47.530][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:02:47.531][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:02:47.532][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:47.532][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:47.533][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:02:47.534][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:02:47.534][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:47.535][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:47.536][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:02:47.537][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:02:47.538][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:47.538][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:47.539][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:02:47.540][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:02:47.540][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:47.541][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:47.542][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:02:47.543][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:02:47.543][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:47.544][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:02:47.545][biodb$getFactory()$createEntryFromCo ...] Accession numbers: 3627.
biodb.TRACE[2024-09-07 16:02:47.547][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-09-07 16:02:47.547][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-09-07 16:02:47.548][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:47.549][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:47.550][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-09-07 16:02:47.550][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-09-07 16:02:47.551][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:47.552][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:47.553][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-09-07 16:02:47.553][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-09-07 16:02:47.554][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:47.555][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:47.556][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-09-07 16:02:47.556][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-09-07 16:02:47.557][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:47.558][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:47.559][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-09-07 16:02:47.559][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-09-07 16:02:47.560][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:47.561][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:02:47.562][private$computeField] Compute value for field "aa.seq".
biodb.DEBUG[2024-09-07 16:02:47.562][private$loadEntries] Creating entries from ids [1]: "CCDS43240.1".
biodb.DEBUG[2024-09-07 16:02:47.563][conn$getEntryContent] Get NCBI CCDS entry content(s) for 1 id(s)...
biodb.TRACE[2024-09-07 16:02:47.564][cch$loadFileContent] Trying to load 1 files from cache: [1]: "CCDS43240.1".
biodb.TRACE[2024-09-07 16:02:47.565][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-09-07 16:02:47.571][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/CCDS43240.1.html".
biodb.DEBUG[2024-09-07 16:02:47.572][conn$getEntryContent] 1 NCBI CCDS entry content(s) loaded from cache.
biodb.DEBUG[2024-09-07 16:02:47.573][self$createEntryFromContent] Creating NCBI CCDS entries from 1 content(s).
biodb.DEBUG[2024-09-07 16:02:47.574][self$createEntryFromContent] Parsing 1 NCBI CCDS entries.
biodb.DEBUG[2024-09-07 16:02:47.575][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:02:47.575][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:02:47.576][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:02:47.580][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:02:47.581][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:02:47.582][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:02:47.582][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:02:47.590][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:02:47.591][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:02:47.592][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:47.593][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:47.593][ef$get] Asked field names are: sequence.
biodb.TRACE[2024-09-07 16:02:47.594][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-09-07 16:02:47.595][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:47.596][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:47.597][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2024-09-07 16:02:47.597][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-09-07 16:02:47.598][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:47.599][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:47.600][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-09-07 16:02:47.600][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-09-07 16:02:47.601][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:47.602][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:47.602][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-09-07 16:02:47.603][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-09-07 16:02:47.604][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:47.605][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:47.605][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:02:47.606][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:02:47.607][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:47.607][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:47.608][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-09-07 16:02:47.609][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-09-07 16:02:47.610][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:47.610][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:47.611][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:02:47.612][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:02:47.613][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:47.613][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:47.614][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:02:47.615][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:02:47.615][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:47.616][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:47.617][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:02:47.618][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:02:47.618][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:47.619][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:47.620][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:02:47.621][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:02:47.622][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:47.622][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:47.623][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:02:47.624][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:02:47.625][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:47.625][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:47.626][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:02:47.627][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:02:47.628][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:47.628][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:02:47.629][self$createEntryFromContent] Accession numbers: CCDS43240.1.
biodb.TRACE[2024-09-07 16:02:47.630][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-09-07 16:02:47.631][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-09-07 16:02:47.631][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:47.632][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:47.633][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-09-07 16:02:47.633][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-09-07 16:02:47.634][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:47.635][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:47.636][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-09-07 16:02:47.636][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-09-07 16:02:47.637][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:47.638][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:47.639][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-09-07 16:02:47.639][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-09-07 16:02:47.640][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:47.645][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:47.646][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-09-07 16:02:47.647][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-09-07 16:02:47.648][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:47.649][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:47.649][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-09-07 16:02:47.650][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-09-07 16:02:47.651][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:47.652][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:47.652][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-09-07 16:02:47.653][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-09-07 16:02:47.654][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:47.654][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:47.656][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:02:47.657][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:02:47.658][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:47.658][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:47.662][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-09-07 16:02:47.663][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-09-07 16:02:47.664][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:47.664][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:47.669][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:02:47.669][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:02:47.670][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:47.671][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:47.672][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:02:47.672][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:02:47.673][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:47.674][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:47.674][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:02:47.675][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:02:47.676][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:47.677][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:47.679][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:02:47.679][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:02:47.680][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:47.681][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:47.681][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:02:47.682][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:02:47.683][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:47.684][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:47.684][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:02:47.685][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:02:47.686][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:47.687][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:47.687][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-09-07 16:02:47.688][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-09-07 16:02:47.689][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:47.690][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:47.690][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-09-07 16:02:47.691][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-09-07 16:02:47.692][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:47.693][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:47.693][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-09-07 16:02:47.694][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-09-07 16:02:47.695][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:47.696][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:47.702][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:02:47.702][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:02:47.703][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:47.704][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:47.704][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:02:47.705][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:02:47.706][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:47.707][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:47.707][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:02:47.708][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:02:47.709][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:47.710][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:47.710][ef$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:02:47.711][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:02:47.712][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:47.713][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:47.713][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:02:47.714][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:02:47.715][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:47.716][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:47.727][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2024-09-07 16:02:47.728][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-09-07 16:02:47.729][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:47.730][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:47.730][self$getBiodb()$getEntryFields()$get] Asked field names are: gene.symbol.
biodb.TRACE[2024-09-07 16:02:47.731][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-09-07 16:02:47.732][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:47.733][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:47.734][self$getBiodb()$getEntryFields()$get] Asked field names are: gene.symbol.
biodb.TRACE[2024-09-07 16:02:47.734][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-09-07 16:02:47.735][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:47.736][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:47.737][ef$get] Asked field names are: symbol.
biodb.TRACE[2024-09-07 16:02:47.737][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-09-07 16:02:47.738][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:47.739][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:47.739][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2024-09-07 16:02:47.740][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-09-07 16:02:47.741][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:47.741][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:47.749][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2024-09-07 16:02:47.750][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-09-07 16:02:47.750][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:47.751][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:47.752][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.location.
biodb.TRACE[2024-09-07 16:02:47.753][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-09-07 16:02:47.753][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:47.754][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:47.755][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.location.
biodb.TRACE[2024-09-07 16:02:47.756][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-09-07 16:02:47.756][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:47.757][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:47.758][ef$get] Asked field names are: location.
biodb.TRACE[2024-09-07 16:02:47.759][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-09-07 16:02:47.759][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:47.760][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:47.761][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2024-09-07 16:02:47.762][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-09-07 16:02:47.762][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:47.763][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:47.770][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-09-07 16:02:47.771][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-09-07 16:02:47.772][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:47.772][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:47.773][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-09-07 16:02:47.774][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-09-07 16:02:47.775][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:47.775][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:47.776][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-09-07 16:02:47.777][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-09-07 16:02:47.778][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:47.778][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:47.779][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-09-07 16:02:47.780][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-09-07 16:02:47.781][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:47.781][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:47.782][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-09-07 16:02:47.783][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-09-07 16:02:47.783][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:47.784][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:47.791][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-09-07 16:02:47.792][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-09-07 16:02:47.793][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:47.798][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:47.798][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-09-07 16:02:47.799][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-09-07 16:02:47.800][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:47.801][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:47.802][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-09-07 16:02:47.802][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-09-07 16:02:47.803][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:47.804][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:47.805][ef$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-09-07 16:02:47.805][ef$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-09-07 16:02:47.806][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:47.807][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:47.807][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-09-07 16:02:47.808][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-09-07 16:02:47.809][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:47.810][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:47.816][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-09-07 16:02:47.817][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-09-07 16:02:47.818][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:47.819][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:47.819][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-09-07 16:02:47.820][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-09-07 16:02:47.821][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:47.822][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:47.822][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-09-07 16:02:47.823][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-09-07 16:02:47.824][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:47.825][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:47.825][ef$get] Asked field names are: description.
biodb.TRACE[2024-09-07 16:02:47.826][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-09-07 16:02:47.827][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:47.827][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:47.828][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-09-07 16:02:47.829][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-09-07 16:02:47.830][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:47.830][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:47.838][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2024-09-07 16:02:47.838][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:02:47.839][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:47.840][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:47.841][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:02:47.842][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:02:47.842][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:47.843][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:47.844][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:02:47.845][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:02:47.846][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:47.846][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:47.847][ef$get] Asked field names are: synonyms.
biodb.TRACE[2024-09-07 16:02:47.848][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:02:47.849][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:47.849][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:47.850][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2024-09-07 16:02:47.851][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:02:47.852][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:47.852][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:47.860][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2024-09-07 16:02:47.861][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-09-07 16:02:47.862][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:47.862][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:47.863][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-09-07 16:02:47.864][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-09-07 16:02:47.865][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:47.865][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:47.866][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-09-07 16:02:47.867][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-09-07 16:02:47.868][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:47.868][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:47.869][ef$get] Asked field names are: sequence.
biodb.TRACE[2024-09-07 16:02:47.874][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-09-07 16:02:47.875][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:47.876][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:47.877][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2024-09-07 16:02:47.877][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-09-07 16:02:47.878][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:47.879][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:47.886][ef$get] Asked field names are: aa.seq.
biodb.TRACE[2024-09-07 16:02:47.887][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-09-07 16:02:47.887][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:47.888][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:47.892][ef$get] Asked field names are: aa.seq.location.
biodb.TRACE[2024-09-07 16:02:47.893][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-09-07 16:02:47.894][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:47.895][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:47.898][ef$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:02:47.899][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:02:47.900][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:47.900][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:47.904][ef$get] Asked field names are: description.
biodb.TRACE[2024-09-07 16:02:47.905][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-09-07 16:02:47.906][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:47.907][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:47.911][ef$get] Asked field names are: gene.symbol.
biodb.TRACE[2024-09-07 16:02:47.912][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-09-07 16:02:47.912][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:47.913][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:47.917][ef$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:02:47.918][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:02:47.919][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:47.919][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:47.923][ef$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-09-07 16:02:47.924][ef$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-09-07 16:02:47.925][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:47.925][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:47.929][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-09-07 16:02:47.930][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-09-07 16:02:47.931][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:47.931][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:47.938][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/bbs-3.20-bioc-longtests/meat/biodbNcbi.Rcheck/biodbNcbi/testref/entry-ncbi.gene-4316-content.xml".
biodb.DEBUG[2024-09-07 16:02:47.939][biodb$getFactory()$createEntryFromCo ...] Creating NCBI Gene entries from 1 content(s).
biodb.DEBUG[2024-09-07 16:02:47.940][biodb$getFactory()$createEntryFromCo ...] Parsing 1 NCBI Gene entries.
biodb.DEBUG[2024-09-07 16:02:47.941][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:02:47.942][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:02:47.942][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:02:47.947][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:02:47.947][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:02:47.948][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:02:47.949][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:02:47.960][ef$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:02:47.961][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:02:47.961][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:47.962][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:47.968][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:02:47.969][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:02:47.970][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:47.970][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:47.971][ef$get] Asked field names are: description.
biodb.TRACE[2024-09-07 16:02:47.972][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-09-07 16:02:47.973][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:47.973][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:47.975][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-09-07 16:02:47.976][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-09-07 16:02:47.976][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:47.977][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:47.978][ef$get] Asked field names are: location.
biodb.TRACE[2024-09-07 16:02:47.978][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-09-07 16:02:47.979][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:47.980][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:47.981][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2024-09-07 16:02:47.982][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-09-07 16:02:47.982][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:47.983][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:47.984][ef$get] Asked field names are: symbol.
biodb.TRACE[2024-09-07 16:02:47.985][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-09-07 16:02:47.985][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:47.986][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:47.987][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2024-09-07 16:02:47.988][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-09-07 16:02:47.989][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:47.989][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:47.990][ef$get] Asked field names are: synonyms.
biodb.TRACE[2024-09-07 16:02:47.991][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:02:47.992][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:47.992][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:47.994][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2024-09-07 16:02:47.994][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:02:47.995][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:47.996][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:47.997][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-09-07 16:02:47.997][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-09-07 16:02:47.998][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:47.999][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:48.001][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-09-07 16:02:48.001][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-09-07 16:02:48.002][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:48.003][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:48.005][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-09-07 16:02:48.006][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-09-07 16:02:48.006][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:48.007][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:48.008][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-09-07 16:02:48.009][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-09-07 16:02:48.009][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:48.010][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:48.011][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-09-07 16:02:48.012][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-09-07 16:02:48.013][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:48.013][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:48.014][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:02:48.015][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:02:48.016][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:48.016][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:48.017][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-09-07 16:02:48.018][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-09-07 16:02:48.019][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:48.019][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:48.020][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:02:48.021][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:02:48.022][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:48.022][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:48.023][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:02:48.024][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:02:48.025][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:48.026][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:48.026][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:02:48.027][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:02:48.028][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:48.029][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:48.030][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:02:48.030][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:02:48.031][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:48.032][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:48.032][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:02:48.033][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:02:48.034][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:48.034][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:48.035][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:02:48.036][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:02:48.037][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:48.037][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:02:48.038][biodb$getFactory()$createEntryFromCo ...] Accession numbers: 4316.
biodb.TRACE[2024-09-07 16:02:48.044][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-09-07 16:02:48.045][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-09-07 16:02:48.046][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:48.046][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:48.047][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-09-07 16:02:48.048][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-09-07 16:02:48.048][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:48.049][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:48.050][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-09-07 16:02:48.051][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-09-07 16:02:48.051][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:48.052][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:48.053][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-09-07 16:02:48.054][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-09-07 16:02:48.054][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:48.055][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:48.056][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-09-07 16:02:48.056][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-09-07 16:02:48.057][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:48.058][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:02:48.058][private$computeField] Compute value for field "aa.seq".
biodb.DEBUG[2024-09-07 16:02:48.059][private$loadEntries] Creating entries from ids [1]: "CCDS8317.1".
biodb.DEBUG[2024-09-07 16:02:48.060][conn$getEntryContent] Get NCBI CCDS entry content(s) for 1 id(s)...
biodb.TRACE[2024-09-07 16:02:48.061][cch$loadFileContent] Trying to load 1 files from cache: [1]: "CCDS8317.1".
biodb.TRACE[2024-09-07 16:02:48.062][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-09-07 16:02:48.063][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-09-07 16:02:48.064][conn$getEntryContent] 0 NCBI CCDS entry content(s) loaded from cache.
biodb.DEBUG[2024-09-07 16:02:48.064][conn$getEntryContent] 1 entry content(s) need to be fetched from NCBI CCDS database "https://www.ncbi.nlm.nih.gov/CCDS/".
biodb.DEBUG[2024-09-07 16:02:48.065][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-09-07 16:02:48.066][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-09-07 16:02:48.076][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:02:48.076][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:02:48.077][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:02:48.081][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:02:48.082][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:02:48.083][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:02:48.083][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:02:48.098][scheduler$sendRequest] Getting content of get URL request "https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS8317.1".
biodb.DEBUG[2024-09-07 16:02:48.114][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-09-07 16:02:48.115][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-09-07 16:02:48.125][private$doSendRequestOnce] Sent URL is "https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS8317.1".
biodb.TRACE[2024-09-07 16:02:49.821][getRCurlRequestResult] Using RCurl package for sending request (https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS8317.1).
biodb.DEBUG[2024-09-07 16:02:51.627][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-09-07 16:02:51.628][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/f8b30fc64b45827df68e019c10a0c2f3.content"
biodb.TRACE[2024-09-07 16:02:51.631][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/f8b30fc64b45827df68e019c10a0c2f3.request"
biodb.TRACE[2024-09-07 16:02:51.633][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/CCDS8317.1.html"
biodb.DEBUG[2024-09-07 16:02:51.635][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-09-07 16:02:51.635][self$createEntryFromContent] Creating NCBI CCDS entries from 1 content(s).
biodb.DEBUG[2024-09-07 16:02:51.636][self$createEntryFromContent] Parsing 1 NCBI CCDS entries.
biodb.DEBUG[2024-09-07 16:02:51.637][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:02:51.638][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:02:51.639][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:02:51.643][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:02:51.644][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:02:51.645][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:02:51.645][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:02:51.658][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:02:51.658][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:02:51.659][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:51.660][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:51.661][ef$get] Asked field names are: sequence.
biodb.TRACE[2024-09-07 16:02:51.661][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-09-07 16:02:51.662][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:51.663][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:51.664][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2024-09-07 16:02:51.665][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-09-07 16:02:51.666][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:51.666][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:51.667][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-09-07 16:02:51.668][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-09-07 16:02:51.669][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:51.669][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:51.670][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-09-07 16:02:51.671][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-09-07 16:02:51.672][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:51.672][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:51.673][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:02:51.680][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:02:51.681][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:51.682][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:51.683][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-09-07 16:02:51.683][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-09-07 16:02:51.684][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:51.685][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:51.685][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:02:51.686][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:02:51.687][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:51.687][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:51.688][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:02:51.689][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:02:51.690][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:51.690][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:51.691][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:02:51.692][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:02:51.692][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:51.693][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:51.694][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:02:51.695][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:02:51.695][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:51.696][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:51.697][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:02:51.698][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:02:51.698][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:51.699][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:51.700][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:02:51.701][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:02:51.701][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:51.702][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:02:51.703][self$createEntryFromContent] Accession numbers: CCDS8317.1.
biodb.TRACE[2024-09-07 16:02:51.703][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-09-07 16:02:51.704][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-09-07 16:02:51.705][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:51.706][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:51.706][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-09-07 16:02:51.707][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-09-07 16:02:51.708][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:51.708][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:51.709][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-09-07 16:02:51.710][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-09-07 16:02:51.711][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:51.711][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:51.729][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-09-07 16:02:51.729][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-09-07 16:02:51.730][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:51.731][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:51.732][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-09-07 16:02:51.732][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-09-07 16:02:51.733][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:51.734][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:51.734][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-09-07 16:02:51.735][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-09-07 16:02:51.736][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:51.736][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:51.737][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-09-07 16:02:51.738][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-09-07 16:02:51.739][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:51.740][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:51.757][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:02:51.758][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:02:51.759][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:51.760][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:51.764][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-09-07 16:02:51.765][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-09-07 16:02:51.765][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:51.766][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:51.770][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:02:51.771][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:02:51.771][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:51.772][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:51.773][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:02:51.774][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:02:51.774][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:51.775][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:51.776][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:02:51.776][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:02:51.777][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:51.778][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:51.780][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:02:51.780][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:02:51.781][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:51.782][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:51.783][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:02:51.783][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:02:51.784][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:51.785][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:51.785][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:02:51.786][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:02:51.787][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:51.788][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:51.788][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-09-07 16:02:51.789][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-09-07 16:02:51.790][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:51.790][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:51.791][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-09-07 16:02:51.792][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-09-07 16:02:51.793][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:51.793][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:51.794][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-09-07 16:02:51.795][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-09-07 16:02:51.796][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:51.796][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:51.802][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:02:51.802][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:02:51.803][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:51.804][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:51.805][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:02:51.805][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:02:51.806][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:51.807][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:51.807][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:02:51.808][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:02:51.809][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:51.810][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:51.810][ef$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:02:51.811][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:02:51.812][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:51.812][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:51.813][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:02:51.814][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:02:51.815][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:51.815][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:51.822][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2024-09-07 16:02:51.823][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-09-07 16:02:51.824][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:51.825][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:51.825][self$getBiodb()$getEntryFields()$get] Asked field names are: gene.symbol.
biodb.TRACE[2024-09-07 16:02:51.826][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-09-07 16:02:51.827][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:51.832][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:51.833][self$getBiodb()$getEntryFields()$get] Asked field names are: gene.symbol.
biodb.TRACE[2024-09-07 16:02:51.834][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-09-07 16:02:51.834][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:51.835][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:51.836][ef$get] Asked field names are: symbol.
biodb.TRACE[2024-09-07 16:02:51.837][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-09-07 16:02:51.837][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:51.838][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:51.839][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2024-09-07 16:02:51.840][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-09-07 16:02:51.840][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:51.841][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:51.848][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2024-09-07 16:02:51.849][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-09-07 16:02:51.850][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:51.850][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:51.851][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.location.
biodb.TRACE[2024-09-07 16:02:51.852][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-09-07 16:02:51.853][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:51.853][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:51.854][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.location.
biodb.TRACE[2024-09-07 16:02:51.855][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-09-07 16:02:51.856][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:51.857][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:51.857][ef$get] Asked field names are: location.
biodb.TRACE[2024-09-07 16:02:51.858][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-09-07 16:02:51.859][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:51.860][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:51.860][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2024-09-07 16:02:51.861][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-09-07 16:02:51.862][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:51.863][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:51.870][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-09-07 16:02:51.871][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-09-07 16:02:51.872][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:51.872][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:51.873][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-09-07 16:02:51.874][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-09-07 16:02:51.875][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:51.876][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:51.876][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-09-07 16:02:51.877][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-09-07 16:02:51.878][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:51.879][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:51.880][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-09-07 16:02:51.880][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-09-07 16:02:51.881][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:51.882][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:51.882][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-09-07 16:02:51.883][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-09-07 16:02:51.884][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:51.885][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:51.892][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-09-07 16:02:51.893][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-09-07 16:02:51.894][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:51.894][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:51.895][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-09-07 16:02:51.896][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-09-07 16:02:51.897][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:51.897][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:51.898][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-09-07 16:02:51.899][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-09-07 16:02:51.900][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:51.900][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:51.901][ef$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-09-07 16:02:51.902][ef$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-09-07 16:02:51.903][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:51.903][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:51.904][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-09-07 16:02:51.909][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-09-07 16:02:51.910][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:51.911][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:51.919][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-09-07 16:02:51.919][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-09-07 16:02:51.920][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:51.921][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:51.922][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-09-07 16:02:51.922][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-09-07 16:02:51.923][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:51.924][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:51.925][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-09-07 16:02:51.925][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-09-07 16:02:51.926][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:51.927][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:51.928][ef$get] Asked field names are: description.
biodb.TRACE[2024-09-07 16:02:51.928][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-09-07 16:02:51.929][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:51.930][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:51.930][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-09-07 16:02:51.931][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-09-07 16:02:51.932][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:51.933][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:51.940][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2024-09-07 16:02:51.941][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:02:51.942][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:51.942][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:51.943][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:02:51.944][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:02:51.945][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:51.945][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:51.946][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:02:51.947][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:02:51.948][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:51.949][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:51.949][ef$get] Asked field names are: synonyms.
biodb.TRACE[2024-09-07 16:02:51.950][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:02:51.951][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:51.952][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:51.952][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2024-09-07 16:02:51.953][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:02:51.954][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:51.954][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:51.961][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2024-09-07 16:02:51.962][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-09-07 16:02:51.963][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:51.964][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:51.964][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-09-07 16:02:51.965][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-09-07 16:02:51.966][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:51.967][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:51.968][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-09-07 16:02:51.968][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-09-07 16:02:51.969][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:51.970][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:51.970][ef$get] Asked field names are: sequence.
biodb.TRACE[2024-09-07 16:02:51.971][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-09-07 16:02:51.972][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:51.973][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:51.974][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2024-09-07 16:02:51.974][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-09-07 16:02:51.975][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:51.976][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:51.987][ef$get] Asked field names are: aa.seq.
biodb.TRACE[2024-09-07 16:02:51.988][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-09-07 16:02:51.989][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:51.990][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:51.994][ef$get] Asked field names are: aa.seq.location.
biodb.TRACE[2024-09-07 16:02:51.995][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-09-07 16:02:51.995][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:51.996][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:52.000][ef$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:02:52.000][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:02:52.001][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:52.002][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:52.006][ef$get] Asked field names are: description.
biodb.TRACE[2024-09-07 16:02:52.007][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-09-07 16:02:52.007][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:52.008][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:52.012][ef$get] Asked field names are: gene.symbol.
biodb.TRACE[2024-09-07 16:02:52.012][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-09-07 16:02:52.013][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:52.014][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:52.018][ef$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:02:52.019][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:02:52.019][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:52.020][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:52.024][ef$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-09-07 16:02:52.024][ef$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-09-07 16:02:52.025][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:52.026][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:52.030][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-09-07 16:02:52.030][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-09-07 16:02:52.031][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:52.032][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:52.043][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/bbs-3.20-bioc-longtests/meat/biodbNcbi.Rcheck/biodbNcbi/testref/entry-ncbi.gene-50943-content.xml".
biodb.DEBUG[2024-09-07 16:02:52.045][biodb$getFactory()$createEntryFromCo ...] Creating NCBI Gene entries from 1 content(s).
biodb.DEBUG[2024-09-07 16:02:52.046][biodb$getFactory()$createEntryFromCo ...] Parsing 1 NCBI Gene entries.
biodb.DEBUG[2024-09-07 16:02:52.047][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:02:52.048][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:02:52.048][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:02:52.052][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:02:52.053][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:02:52.054][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:02:52.054][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:02:52.078][ef$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:02:52.079][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:02:52.080][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:52.081][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:52.083][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:02:52.083][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:02:52.084][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:52.085][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:52.086][ef$get] Asked field names are: description.
biodb.TRACE[2024-09-07 16:02:52.086][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-09-07 16:02:52.087][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:52.088][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:52.090][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-09-07 16:02:52.091][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-09-07 16:02:52.091][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:52.092][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:52.093][ef$get] Asked field names are: location.
biodb.TRACE[2024-09-07 16:02:52.094][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-09-07 16:02:52.099][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:52.100][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:52.102][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2024-09-07 16:02:52.103][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-09-07 16:02:52.104][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:52.105][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:52.106][ef$get] Asked field names are: symbol.
biodb.TRACE[2024-09-07 16:02:52.107][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-09-07 16:02:52.107][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:52.108][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:52.110][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2024-09-07 16:02:52.111][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-09-07 16:02:52.111][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:52.112][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:52.113][ef$get] Asked field names are: synonyms.
biodb.TRACE[2024-09-07 16:02:52.113][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:02:52.114][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:52.115][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:52.117][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2024-09-07 16:02:52.118][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:02:52.118][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:52.119][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:52.120][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-09-07 16:02:52.120][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-09-07 16:02:52.121][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:52.122][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:52.126][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-09-07 16:02:52.127][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-09-07 16:02:52.128][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:52.128][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:52.133][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-09-07 16:02:52.134][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-09-07 16:02:52.135][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:52.136][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:52.136][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-09-07 16:02:52.137][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-09-07 16:02:52.138][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:52.139][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:52.139][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-09-07 16:02:52.140][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-09-07 16:02:52.141][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:52.142][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:52.142][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:02:52.143][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:02:52.144][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:52.145][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:52.145][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-09-07 16:02:52.146][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-09-07 16:02:52.147][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:52.148][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:52.149][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:02:52.149][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:02:52.150][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:52.151][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:52.152][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:02:52.152][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:02:52.153][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:52.154][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:52.155][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:02:52.155][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:02:52.156][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:52.157][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:52.158][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:02:52.158][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:02:52.159][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:52.160][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:52.161][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:02:52.161][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:02:52.162][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:52.163][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:52.163][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:02:52.164][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:02:52.165][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:52.166][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:02:52.167][biodb$getFactory()$createEntryFromCo ...] Accession numbers: 50943.
biodb.TRACE[2024-09-07 16:02:52.168][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-09-07 16:02:52.169][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-09-07 16:02:52.170][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:52.171][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:52.171][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-09-07 16:02:52.172][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-09-07 16:02:52.173][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:52.174][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:52.175][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-09-07 16:02:52.175][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-09-07 16:02:52.176][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:52.177][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:52.178][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-09-07 16:02:52.182][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-09-07 16:02:52.183][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:52.184][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:52.185][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-09-07 16:02:52.186][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-09-07 16:02:52.187][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:52.187][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:02:52.188][private$computeField] Compute value for field "aa.seq".
biodb.DEBUG[2024-09-07 16:02:52.189][private$loadEntries] Creating entries from ids [1]: "CCDS14323.1".
biodb.DEBUG[2024-09-07 16:02:52.189][conn$getEntryContent] Get NCBI CCDS entry content(s) for 1 id(s)...
biodb.TRACE[2024-09-07 16:02:52.191][cch$loadFileContent] Trying to load 1 files from cache: [1]: "CCDS14323.1".
biodb.TRACE[2024-09-07 16:02:52.191][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-09-07 16:02:52.192][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-09-07 16:02:52.193][conn$getEntryContent] 0 NCBI CCDS entry content(s) loaded from cache.
biodb.DEBUG[2024-09-07 16:02:52.194][conn$getEntryContent] 1 entry content(s) need to be fetched from NCBI CCDS database "https://www.ncbi.nlm.nih.gov/CCDS/".
biodb.DEBUG[2024-09-07 16:02:52.194][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-09-07 16:02:52.195][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-09-07 16:02:52.197][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:02:52.198][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:02:52.199][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:02:52.203][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:02:52.204][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:02:52.204][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:02:52.205][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:02:52.206][scheduler$sendRequest] Getting content of get URL request "https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS14323.1".
biodb.DEBUG[2024-09-07 16:02:52.208][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-09-07 16:02:52.209][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-09-07 16:02:52.210][private$doSendRequestOnce] Sent URL is "https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS14323.1".
biodb.TRACE[2024-09-07 16:02:53.442][getRCurlRequestResult] Using RCurl package for sending request (https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS14323.1).
biodb.DEBUG[2024-09-07 16:02:54.920][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-09-07 16:02:54.922][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/848a237a5aab8c7ef76a9f895c87510f.content"
biodb.TRACE[2024-09-07 16:02:54.925][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/848a237a5aab8c7ef76a9f895c87510f.request"
biodb.TRACE[2024-09-07 16:02:54.927][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/CCDS14323.1.html"
biodb.DEBUG[2024-09-07 16:02:54.928][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-09-07 16:02:54.929][self$createEntryFromContent] Creating NCBI CCDS entries from 1 content(s).
biodb.DEBUG[2024-09-07 16:02:54.930][self$createEntryFromContent] Parsing 1 NCBI CCDS entries.
biodb.DEBUG[2024-09-07 16:02:54.931][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:02:54.932][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:02:54.933][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:02:54.937][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:02:54.938][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:02:54.938][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:02:54.939][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:02:54.954][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:02:54.954][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:02:54.955][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:54.956][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:54.957][ef$get] Asked field names are: sequence.
biodb.TRACE[2024-09-07 16:02:54.957][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-09-07 16:02:54.958][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:54.959][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:54.960][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2024-09-07 16:02:54.961][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-09-07 16:02:54.961][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:54.962][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:54.963][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-09-07 16:02:54.964][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-09-07 16:02:54.964][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:54.965][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:54.966][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-09-07 16:02:54.967][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-09-07 16:02:54.967][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:54.968][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:54.969][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:02:54.976][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:02:54.977][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:54.978][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:54.979][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-09-07 16:02:54.980][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-09-07 16:02:54.980][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:54.981][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:54.982][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:02:54.983][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:02:54.984][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:54.984][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:54.985][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:02:54.986][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:02:54.986][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:54.987][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:54.988][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:02:54.988][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:02:54.989][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:54.990][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:54.991][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:02:54.991][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:02:54.992][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:54.993][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:54.993][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:02:54.994][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:02:54.995][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:54.995][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:54.996][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:02:54.997][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:02:54.998][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:54.998][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:02:54.999][self$createEntryFromContent] Accession numbers: CCDS14323.1.
biodb.TRACE[2024-09-07 16:02:55.000][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-09-07 16:02:55.001][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-09-07 16:02:55.001][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:55.002][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:55.003][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-09-07 16:02:55.003][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-09-07 16:02:55.004][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:55.005][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:55.006][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-09-07 16:02:55.006][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-09-07 16:02:55.007][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:55.008][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:55.008][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-09-07 16:02:55.009][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-09-07 16:02:55.010][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:55.011][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:55.011][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-09-07 16:02:55.012][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-09-07 16:02:55.013][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:55.013][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:55.014][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-09-07 16:02:55.015][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-09-07 16:02:55.016][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:55.016][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:55.017][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-09-07 16:02:55.018][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-09-07 16:02:55.019][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:55.019][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:55.021][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:02:55.022][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:02:55.022][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:55.023][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:55.028][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-09-07 16:02:55.028][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-09-07 16:02:55.029][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:55.030][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:55.034][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:02:55.035][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:02:55.035][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:55.036][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:55.037][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:02:55.037][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:02:55.038][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:55.039][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:55.039][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:02:55.040][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:02:55.041][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:55.042][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:55.043][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:02:55.044][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:02:55.049][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:55.050][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:55.051][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:02:55.052][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:02:55.053][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:55.053][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:55.054][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:02:55.055][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:02:55.055][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:55.056][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:55.057][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-09-07 16:02:55.058][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-09-07 16:02:55.058][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:55.059][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:55.060][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-09-07 16:02:55.061][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-09-07 16:02:55.061][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:55.062][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:55.063][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-09-07 16:02:55.063][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-09-07 16:02:55.064][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:55.065][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:55.071][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:02:55.072][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:02:55.072][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:55.073][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:55.074][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:02:55.075][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:02:55.075][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:55.076][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:55.077][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:02:55.077][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:02:55.078][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:55.079][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:55.080][ef$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:02:55.080][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:02:55.081][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:55.082][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:55.082][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:02:55.083][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:02:55.084][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:55.085][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:55.092][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2024-09-07 16:02:55.093][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-09-07 16:02:55.094][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:55.094][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:55.095][self$getBiodb()$getEntryFields()$get] Asked field names are: gene.symbol.
biodb.TRACE[2024-09-07 16:02:55.096][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-09-07 16:02:55.097][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:55.097][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:55.098][self$getBiodb()$getEntryFields()$get] Asked field names are: gene.symbol.
biodb.TRACE[2024-09-07 16:02:55.099][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-09-07 16:02:55.099][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:55.100][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:55.101][ef$get] Asked field names are: symbol.
biodb.TRACE[2024-09-07 16:02:55.102][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-09-07 16:02:55.102][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:55.103][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:55.104][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2024-09-07 16:02:55.105][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-09-07 16:02:55.105][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:55.106][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:55.113][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2024-09-07 16:02:55.114][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-09-07 16:02:55.115][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:55.115][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:55.116][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.location.
biodb.TRACE[2024-09-07 16:02:55.117][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-09-07 16:02:55.118][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:55.118][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:55.119][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.location.
biodb.TRACE[2024-09-07 16:02:55.120][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-09-07 16:02:55.125][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:55.126][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:55.127][ef$get] Asked field names are: location.
biodb.TRACE[2024-09-07 16:02:55.128][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-09-07 16:02:55.129][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:55.130][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:55.130][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2024-09-07 16:02:55.131][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-09-07 16:02:55.132][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:55.133][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:55.140][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-09-07 16:02:55.140][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-09-07 16:02:55.141][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:55.142][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:55.142][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-09-07 16:02:55.143][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-09-07 16:02:55.144][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:55.145][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:55.145][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-09-07 16:02:55.146][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-09-07 16:02:55.147][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:55.147][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:55.148][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-09-07 16:02:55.149][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-09-07 16:02:55.150][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:55.151][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:55.151][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-09-07 16:02:55.152][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-09-07 16:02:55.153][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:55.154][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:55.161][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-09-07 16:02:55.162][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-09-07 16:02:55.162][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:55.163][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:55.164][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-09-07 16:02:55.165][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-09-07 16:02:55.165][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:55.166][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:55.167][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-09-07 16:02:55.168][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-09-07 16:02:55.169][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:55.170][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:55.171][ef$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-09-07 16:02:55.171][ef$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-09-07 16:02:55.172][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:55.173][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:55.173][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-09-07 16:02:55.174][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-09-07 16:02:55.175][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:55.176][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:55.183][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-09-07 16:02:55.184][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-09-07 16:02:55.185][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:55.185][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:55.186][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-09-07 16:02:55.187][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-09-07 16:02:55.188][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:55.188][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:55.189][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-09-07 16:02:55.190][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-09-07 16:02:55.191][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:55.191][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:55.192][ef$get] Asked field names are: description.
biodb.TRACE[2024-09-07 16:02:55.193][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-09-07 16:02:55.194][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:55.194][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:55.195][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-09-07 16:02:55.196][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-09-07 16:02:55.197][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:55.202][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:55.210][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2024-09-07 16:02:55.210][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:02:55.211][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:55.212][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:55.212][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:02:55.213][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:02:55.214][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:55.215][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:55.215][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:02:55.216][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:02:55.217][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:55.218][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:55.218][ef$get] Asked field names are: synonyms.
biodb.TRACE[2024-09-07 16:02:55.219][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:02:55.220][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:55.220][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:55.221][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2024-09-07 16:02:55.222][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:02:55.222][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:55.223][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:55.230][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2024-09-07 16:02:55.231][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-09-07 16:02:55.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:55.232][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:55.233][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-09-07 16:02:55.234][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-09-07 16:02:55.234][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:55.235][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:55.236][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-09-07 16:02:55.237][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-09-07 16:02:55.237][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:55.238][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:55.239][ef$get] Asked field names are: sequence.
biodb.TRACE[2024-09-07 16:02:55.240][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-09-07 16:02:55.240][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:55.241][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:55.242][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2024-09-07 16:02:55.242][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-09-07 16:02:55.243][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:55.244][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:55.251][ef$get] Asked field names are: aa.seq.
biodb.TRACE[2024-09-07 16:02:55.252][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-09-07 16:02:55.253][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:55.253][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:55.257][ef$get] Asked field names are: aa.seq.location.
biodb.TRACE[2024-09-07 16:02:55.258][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-09-07 16:02:55.259][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:55.260][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:55.264][ef$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:02:55.264][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:02:55.265][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:55.266][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:55.270][ef$get] Asked field names are: description.
biodb.TRACE[2024-09-07 16:02:55.271][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-09-07 16:02:55.271][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:55.272][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:55.280][ef$get] Asked field names are: gene.symbol.
biodb.TRACE[2024-09-07 16:02:55.281][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-09-07 16:02:55.282][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:55.283][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:55.287][ef$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:02:55.288][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:02:55.288][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:55.289][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:55.293][ef$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-09-07 16:02:55.294][ef$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-09-07 16:02:55.294][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:55.295][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:55.299][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-09-07 16:02:55.300][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-09-07 16:02:55.300][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:55.301][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:55.307][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/bbs-3.20-bioc-longtests/meat/biodbNcbi.Rcheck/biodbNcbi/testref/entry-ncbi.gene-5551-content.xml".
biodb.DEBUG[2024-09-07 16:02:55.308][biodb$getFactory()$createEntryFromCo ...] Creating NCBI Gene entries from 1 content(s).
biodb.DEBUG[2024-09-07 16:02:55.309][biodb$getFactory()$createEntryFromCo ...] Parsing 1 NCBI Gene entries.
biodb.DEBUG[2024-09-07 16:02:55.311][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:02:55.311][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:02:55.312][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:02:55.315][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:02:55.316][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:02:55.317][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:02:55.317][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:02:55.325][ef$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:02:55.326][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:02:55.327][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:55.327][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:55.329][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:02:55.329][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:02:55.330][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:55.331][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:55.332][ef$get] Asked field names are: description.
biodb.TRACE[2024-09-07 16:02:55.332][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-09-07 16:02:55.333][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:55.334][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:55.335][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-09-07 16:02:55.336][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-09-07 16:02:55.337][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:55.337][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:55.338][ef$get] Asked field names are: location.
biodb.TRACE[2024-09-07 16:02:55.339][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-09-07 16:02:55.340][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:55.340][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:55.341][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2024-09-07 16:02:55.342][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-09-07 16:02:55.343][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:55.344][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:55.344][ef$get] Asked field names are: symbol.
biodb.TRACE[2024-09-07 16:02:55.345][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-09-07 16:02:55.346][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:55.347][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:55.348][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2024-09-07 16:02:55.349][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-09-07 16:02:55.349][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:55.350][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:55.351][ef$get] Asked field names are: synonyms.
biodb.TRACE[2024-09-07 16:02:55.352][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:02:55.353][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:55.353][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:55.355][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2024-09-07 16:02:55.355][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:02:55.356][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:55.357][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:55.357][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-09-07 16:02:55.358][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-09-07 16:02:55.359][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:55.360][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:55.361][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-09-07 16:02:55.366][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-09-07 16:02:55.367][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:55.368][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:55.370][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-09-07 16:02:55.371][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-09-07 16:02:55.372][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:55.372][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:55.373][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-09-07 16:02:55.374][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-09-07 16:02:55.375][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:55.375][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:55.376][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-09-07 16:02:55.377][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-09-07 16:02:55.378][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:55.378][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:55.379][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:02:55.380][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:02:55.381][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:55.381][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:55.382][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-09-07 16:02:55.383][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-09-07 16:02:55.384][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:55.384][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:55.385][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:02:55.386][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:02:55.387][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:55.387][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:55.388][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:02:55.389][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:02:55.390][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:55.390][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:55.391][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:02:55.392][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:02:55.393][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:55.394][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:55.394][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:02:55.395][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:02:55.396][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:55.397][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:55.397][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:02:55.398][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:02:55.399][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:55.400][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:55.400][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:02:55.401][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:02:55.402][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:55.402][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:02:55.403][biodb$getFactory()$createEntryFromCo ...] Accession numbers: 5551.
biodb.TRACE[2024-09-07 16:02:55.405][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-09-07 16:02:55.406][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-09-07 16:02:55.407][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:55.407][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:55.408][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-09-07 16:02:55.409][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-09-07 16:02:55.410][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:55.410][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:55.411][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-09-07 16:02:55.412][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-09-07 16:02:55.413][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:55.413][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:55.414][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-09-07 16:02:55.415][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-09-07 16:02:55.416][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:55.416][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:55.417][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-09-07 16:02:55.418][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-09-07 16:02:55.418][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:55.419][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:02:55.420][private$computeField] Compute value for field "aa.seq".
biodb.DEBUG[2024-09-07 16:02:55.421][private$loadEntries] Creating entries from ids [1]: "CCDS7305.1".
biodb.DEBUG[2024-09-07 16:02:55.421][conn$getEntryContent] Get NCBI CCDS entry content(s) for 1 id(s)...
biodb.TRACE[2024-09-07 16:02:55.423][cch$loadFileContent] Trying to load 1 files from cache: [1]: "CCDS7305.1".
biodb.TRACE[2024-09-07 16:02:55.423][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-09-07 16:02:55.424][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-09-07 16:02:55.425][conn$getEntryContent] 0 NCBI CCDS entry content(s) loaded from cache.
biodb.DEBUG[2024-09-07 16:02:55.426][conn$getEntryContent] 1 entry content(s) need to be fetched from NCBI CCDS database "https://www.ncbi.nlm.nih.gov/CCDS/".
biodb.DEBUG[2024-09-07 16:02:55.427][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-09-07 16:02:55.427][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-09-07 16:02:55.430][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:02:55.430][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:02:55.431][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:02:55.435][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:02:55.436][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:02:55.440][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:02:55.441][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:02:55.442][scheduler$sendRequest] Getting content of get URL request "https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS7305.1".
biodb.DEBUG[2024-09-07 16:02:55.445][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-09-07 16:02:55.446][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-09-07 16:02:55.447][private$doSendRequestOnce] Sent URL is "https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS7305.1".
biodb.TRACE[2024-09-07 16:02:56.872][getRCurlRequestResult] Using RCurl package for sending request (https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS7305.1).
biodb.DEBUG[2024-09-07 16:02:58.687][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-09-07 16:02:58.689][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/f6e550a9933c9781434f396895082740.content"
biodb.TRACE[2024-09-07 16:02:58.692][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/f6e550a9933c9781434f396895082740.request"
biodb.TRACE[2024-09-07 16:02:58.694][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/CCDS7305.1.html"
biodb.DEBUG[2024-09-07 16:02:58.696][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-09-07 16:02:58.697][self$createEntryFromContent] Creating NCBI CCDS entries from 1 content(s).
biodb.DEBUG[2024-09-07 16:02:58.697][self$createEntryFromContent] Parsing 1 NCBI CCDS entries.
biodb.DEBUG[2024-09-07 16:02:58.699][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:02:58.699][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:02:58.700][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:02:58.705][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:02:58.705][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:02:58.706][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:02:58.707][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:02:58.721][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:02:58.722][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:02:58.723][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:58.723][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:58.724][ef$get] Asked field names are: sequence.
biodb.TRACE[2024-09-07 16:02:58.725][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-09-07 16:02:58.726][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:58.726][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:58.728][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2024-09-07 16:02:58.728][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-09-07 16:02:58.729][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:58.730][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:58.731][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-09-07 16:02:58.731][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-09-07 16:02:58.732][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:58.733][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:58.733][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-09-07 16:02:58.734][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-09-07 16:02:58.735][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:58.736][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:58.736][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:02:58.737][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:02:58.738][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:58.739][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:58.739][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-09-07 16:02:58.740][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-09-07 16:02:58.741][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:58.742][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:58.743][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:02:58.744][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:02:58.744][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:58.745][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:58.746][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:02:58.747][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:02:58.747][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:58.748][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:58.749][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:02:58.750][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:02:58.750][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:58.751][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:58.752][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:02:58.753][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:02:58.753][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:58.754][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:58.755][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:02:58.755][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:02:58.756][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:58.757][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:58.758][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:02:58.758][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:02:58.768][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:58.769][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:02:58.770][self$createEntryFromContent] Accession numbers: CCDS7305.1.
biodb.TRACE[2024-09-07 16:02:58.771][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-09-07 16:02:58.772][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-09-07 16:02:58.772][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:58.773][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:58.774][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-09-07 16:02:58.775][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-09-07 16:02:58.775][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:58.776][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:58.777][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-09-07 16:02:58.777][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-09-07 16:02:58.778][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:58.779][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:58.780][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-09-07 16:02:58.780][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-09-07 16:02:58.781][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:58.782][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:58.783][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-09-07 16:02:58.783][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-09-07 16:02:58.784][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:58.785][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:58.785][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-09-07 16:02:58.786][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-09-07 16:02:58.787][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:58.787][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:58.788][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-09-07 16:02:58.789][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-09-07 16:02:58.790][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:58.790][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:58.792][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:02:58.793][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:02:58.793][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:58.794][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:58.798][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-09-07 16:02:58.799][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-09-07 16:02:58.800][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:58.800][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:58.805][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:02:58.806][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:02:58.806][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:58.807][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:58.808][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:02:58.809][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:02:58.809][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:58.810][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:58.811][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:02:58.811][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:02:58.812][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:58.813][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:58.815][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:02:58.816][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:02:58.816][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:58.817][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:58.818][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:02:58.819][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:02:58.820][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:58.820][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:58.821][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:02:58.822][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:02:58.822][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:58.823][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:58.824][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-09-07 16:02:58.825][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-09-07 16:02:58.826][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:58.827][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:58.827][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-09-07 16:02:58.828][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-09-07 16:02:58.829][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:58.830][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:58.830][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-09-07 16:02:58.831][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-09-07 16:02:58.832][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:58.833][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:58.839][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:02:58.840][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:02:58.845][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:58.846][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:58.846][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:02:58.847][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:02:58.848][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:58.849][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:58.850][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:02:58.850][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:02:58.851][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:58.852][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:58.852][ef$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:02:58.853][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:02:58.854][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:58.854][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:58.855][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:02:58.856][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:02:58.857][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:58.858][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:58.865][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2024-09-07 16:02:58.865][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-09-07 16:02:58.866][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:58.867][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:58.868][self$getBiodb()$getEntryFields()$get] Asked field names are: gene.symbol.
biodb.TRACE[2024-09-07 16:02:58.868][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-09-07 16:02:58.869][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:58.870][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:58.871][self$getBiodb()$getEntryFields()$get] Asked field names are: gene.symbol.
biodb.TRACE[2024-09-07 16:02:58.872][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-09-07 16:02:58.872][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:58.873][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:58.874][ef$get] Asked field names are: symbol.
biodb.TRACE[2024-09-07 16:02:58.874][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-09-07 16:02:58.875][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:58.876][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:58.877][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2024-09-07 16:02:58.877][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-09-07 16:02:58.878][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:58.879][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:58.886][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2024-09-07 16:02:58.887][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-09-07 16:02:58.888][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:58.888][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:58.889][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.location.
biodb.TRACE[2024-09-07 16:02:58.890][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-09-07 16:02:58.891][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:58.891][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:58.892][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.location.
biodb.TRACE[2024-09-07 16:02:58.893][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-09-07 16:02:58.894][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:58.894][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:58.895][ef$get] Asked field names are: location.
biodb.TRACE[2024-09-07 16:02:58.896][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-09-07 16:02:58.897][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:58.897][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:58.898][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2024-09-07 16:02:58.899][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-09-07 16:02:58.900][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:58.900][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:58.908][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-09-07 16:02:58.909][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-09-07 16:02:58.909][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:58.910][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:58.911][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-09-07 16:02:58.912][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-09-07 16:02:58.912][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:58.913][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:58.914][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-09-07 16:02:58.914][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-09-07 16:02:59.036][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:59.045][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:59.046][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-09-07 16:02:59.047][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-09-07 16:02:59.047][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:59.048][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:59.049][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-09-07 16:02:59.049][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-09-07 16:02:59.050][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:59.051][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:59.057][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-09-07 16:02:59.058][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-09-07 16:02:59.059][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:59.060][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:59.061][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-09-07 16:02:59.061][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-09-07 16:02:59.062][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:59.063][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:59.063][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-09-07 16:02:59.064][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-09-07 16:02:59.065][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:59.065][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:59.066][ef$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-09-07 16:02:59.067][ef$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-09-07 16:02:59.067][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:59.068][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:59.069][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-09-07 16:02:59.069][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-09-07 16:02:59.070][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:59.071][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:59.077][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-09-07 16:02:59.078][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-09-07 16:02:59.079][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:59.080][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:59.081][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-09-07 16:02:59.081][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-09-07 16:02:59.082][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:59.083][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:59.083][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-09-07 16:02:59.084][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-09-07 16:02:59.085][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:59.085][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:59.086][ef$get] Asked field names are: description.
biodb.TRACE[2024-09-07 16:02:59.087][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-09-07 16:02:59.088][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:59.088][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:59.089][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-09-07 16:02:59.090][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-09-07 16:02:59.091][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:59.091][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:59.098][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2024-09-07 16:02:59.099][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:02:59.100][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:59.100][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:59.101][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:02:59.102][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:02:59.103][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:59.103][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:59.104][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:02:59.105][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:02:59.105][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:59.106][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:59.107][ef$get] Asked field names are: synonyms.
biodb.TRACE[2024-09-07 16:02:59.108][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:02:59.108][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:59.109][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:59.110][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2024-09-07 16:02:59.110][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:02:59.111][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:59.112][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:59.119][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2024-09-07 16:02:59.119][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-09-07 16:02:59.120][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:59.121][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:59.122][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-09-07 16:02:59.123][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-09-07 16:02:59.123][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:59.124][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:59.125][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-09-07 16:02:59.125][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-09-07 16:02:59.126][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:59.127][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:59.127][ef$get] Asked field names are: sequence.
biodb.TRACE[2024-09-07 16:02:59.128][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-09-07 16:02:59.129][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:59.129][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:59.130][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2024-09-07 16:02:59.131][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-09-07 16:02:59.132][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:59.133][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:59.140][ef$get] Asked field names are: aa.seq.
biodb.TRACE[2024-09-07 16:02:59.141][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-09-07 16:02:59.142][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:59.143][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:59.147][ef$get] Asked field names are: aa.seq.location.
biodb.TRACE[2024-09-07 16:02:59.148][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-09-07 16:02:59.148][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:59.149][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:59.153][ef$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:02:59.154][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:02:59.155][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:59.156][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:59.159][ef$get] Asked field names are: description.
biodb.TRACE[2024-09-07 16:02:59.160][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-09-07 16:02:59.161][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:59.162][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:59.166][ef$get] Asked field names are: gene.symbol.
biodb.TRACE[2024-09-07 16:02:59.167][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-09-07 16:02:59.168][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:59.168][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:59.172][ef$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:02:59.173][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:02:59.174][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:59.175][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:59.179][ef$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-09-07 16:02:59.179][ef$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-09-07 16:02:59.180][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:59.181][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:59.185][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-09-07 16:02:59.186][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-09-07 16:02:59.186][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:59.187][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:59.193][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/bbs-3.20-bioc-longtests/meat/biodbNcbi.Rcheck/biodbNcbi/testref/entry-ncbi.gene-916-content.xml".
biodb.DEBUG[2024-09-07 16:02:59.194][biodb$getFactory()$createEntryFromCo ...] Creating NCBI Gene entries from 1 content(s).
biodb.DEBUG[2024-09-07 16:02:59.195][biodb$getFactory()$createEntryFromCo ...] Parsing 1 NCBI Gene entries.
biodb.DEBUG[2024-09-07 16:02:59.196][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:02:59.197][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:02:59.197][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:02:59.202][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:02:59.203][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:02:59.203][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:02:59.204][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:02:59.211][ef$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:02:59.212][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:02:59.213][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:59.214][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:59.215][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:02:59.216][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:02:59.217][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:59.218][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:59.219][ef$get] Asked field names are: description.
biodb.TRACE[2024-09-07 16:02:59.220][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-09-07 16:02:59.220][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:59.221][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:59.222][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-09-07 16:02:59.223][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-09-07 16:02:59.224][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:59.225][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:59.226][ef$get] Asked field names are: location.
biodb.TRACE[2024-09-07 16:02:59.226][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-09-07 16:02:59.227][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:59.228][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:59.229][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2024-09-07 16:02:59.230][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-09-07 16:02:59.231][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:59.231][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:59.232][ef$get] Asked field names are: symbol.
biodb.TRACE[2024-09-07 16:02:59.233][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-09-07 16:02:59.234][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:59.235][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:59.236][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2024-09-07 16:02:59.237][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-09-07 16:02:59.238][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:59.238][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:59.239][ef$get] Asked field names are: synonyms.
biodb.TRACE[2024-09-07 16:02:59.240][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:02:59.241][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:59.241][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:59.243][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2024-09-07 16:02:59.243][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:02:59.244][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:59.245][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:59.246][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-09-07 16:02:59.247][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-09-07 16:02:59.247][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:59.248][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:59.250][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-09-07 16:02:59.251][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-09-07 16:02:59.251][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:59.252][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:59.254][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-09-07 16:02:59.255][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-09-07 16:02:59.256][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:59.257][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:59.257][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-09-07 16:02:59.258][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-09-07 16:02:59.259][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:59.260][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:59.261][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-09-07 16:02:59.261][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-09-07 16:02:59.262][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:59.263][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:59.264][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:02:59.264][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:02:59.265][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:59.266][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:59.267][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-09-07 16:02:59.268][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-09-07 16:02:59.268][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:59.269][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:59.270][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:02:59.271][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:02:59.271][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:59.272][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:59.273][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:02:59.274][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:02:59.274][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:59.275][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:59.276][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:02:59.277][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:02:59.278][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:59.278][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:59.279][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:02:59.280][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:02:59.281][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:59.281][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:59.282][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:02:59.283][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:02:59.284][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:59.285][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:59.285][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:02:59.286][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:02:59.287][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:59.288][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:02:59.288][biodb$getFactory()$createEntryFromCo ...] Accession numbers: 916.
biodb.TRACE[2024-09-07 16:02:59.290][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-09-07 16:02:59.291][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-09-07 16:02:59.292][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:59.293][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:59.293][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-09-07 16:02:59.294][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-09-07 16:02:59.295][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:59.296][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:59.296][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-09-07 16:02:59.297][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-09-07 16:02:59.298][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:59.299][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:59.300][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-09-07 16:02:59.300][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-09-07 16:02:59.301][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:59.302][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:59.303][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-09-07 16:02:59.303][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-09-07 16:02:59.304][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:59.305][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:02:59.306][private$computeField] Compute value for field "aa.seq".
biodb.DEBUG[2024-09-07 16:02:59.307][private$loadEntries] Creating entries from ids [1]: "CCDS31685.1".
biodb.DEBUG[2024-09-07 16:02:59.308][conn$getEntryContent] Get NCBI CCDS entry content(s) for 1 id(s)...
biodb.TRACE[2024-09-07 16:02:59.309][cch$loadFileContent] Trying to load 1 files from cache: [1]: "CCDS31685.1".
biodb.TRACE[2024-09-07 16:02:59.310][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-09-07 16:02:59.311][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-09-07 16:02:59.312][conn$getEntryContent] 0 NCBI CCDS entry content(s) loaded from cache.
biodb.DEBUG[2024-09-07 16:02:59.312][conn$getEntryContent] 1 entry content(s) need to be fetched from NCBI CCDS database "https://www.ncbi.nlm.nih.gov/CCDS/".
biodb.DEBUG[2024-09-07 16:02:59.313][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-09-07 16:02:59.314][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-09-07 16:02:59.316][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:02:59.317][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:02:59.318][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:02:59.323][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:02:59.323][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:02:59.324][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:02:59.325][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:02:59.326][scheduler$sendRequest] Getting content of get URL request "https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS31685.1".
biodb.DEBUG[2024-09-07 16:02:59.328][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-09-07 16:02:59.329][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-09-07 16:02:59.330][private$doSendRequestOnce] Sent URL is "https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS31685.1".
biodb.TRACE[2024-09-07 16:03:00.688][getRCurlRequestResult] Using RCurl package for sending request (https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS31685.1).
biodb.DEBUG[2024-09-07 16:03:02.231][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-09-07 16:03:02.232][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/05b58486648daa4e8cf1dfaa5386f480.content"
biodb.TRACE[2024-09-07 16:03:02.235][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/05b58486648daa4e8cf1dfaa5386f480.request"
biodb.TRACE[2024-09-07 16:03:02.237][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/CCDS31685.1.html"
biodb.DEBUG[2024-09-07 16:03:02.239][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-09-07 16:03:02.240][self$createEntryFromContent] Creating NCBI CCDS entries from 1 content(s).
biodb.DEBUG[2024-09-07 16:03:02.241][self$createEntryFromContent] Parsing 1 NCBI CCDS entries.
biodb.DEBUG[2024-09-07 16:03:02.250][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:03:02.251][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:03:02.251][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:03:02.256][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:03:02.256][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:03:02.257][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:03:02.258][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:03:02.268][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:02.269][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:02.270][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:02.270][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:02.271][ef$get] Asked field names are: sequence.
biodb.TRACE[2024-09-07 16:03:02.272][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-09-07 16:03:02.273][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:02.273][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:02.274][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2024-09-07 16:03:02.275][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-09-07 16:03:02.276][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:02.277][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:02.277][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-09-07 16:03:02.278][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-09-07 16:03:02.279][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:02.280][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:02.280][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-09-07 16:03:02.281][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-09-07 16:03:02.282][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:02.282][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:02.283][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:02.284][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:02.285][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:02.285][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:02.286][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-09-07 16:03:02.287][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-09-07 16:03:02.288][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:02.288][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:02.289][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:02.290][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:02.290][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:02.291][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:02.292][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:02.292][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:02.293][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:02.294][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:02.295][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:02.295][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:02.296][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:02.297][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:02.297][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:02.298][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:02.299][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:02.300][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:02.300][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:02.301][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:02.302][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:02.303][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:02.303][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:02.304][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:02.305][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:02.305][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:03:02.306][self$createEntryFromContent] Accession numbers: CCDS31685.1.
biodb.TRACE[2024-09-07 16:03:02.307][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-09-07 16:03:02.307][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-09-07 16:03:02.308][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:02.309][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:02.309][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-09-07 16:03:02.310][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-09-07 16:03:02.311][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:02.312][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:02.312][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-09-07 16:03:02.313][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-09-07 16:03:02.314][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:02.314][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:02.315][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-09-07 16:03:02.316][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-09-07 16:03:02.317][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:02.317][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:02.318][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-09-07 16:03:02.319][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-09-07 16:03:02.319][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:02.320][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:02.321][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-09-07 16:03:02.322][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-09-07 16:03:02.322][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:02.323][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:02.324][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-09-07 16:03:02.324][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-09-07 16:03:02.325][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:02.326][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:02.327][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:02.328][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:02.329][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:02.329][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:02.334][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-09-07 16:03:02.334][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-09-07 16:03:02.335][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:02.336][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:02.340][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:02.341][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:02.342][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:02.342][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:02.343][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:02.344][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:02.344][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:02.345][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:02.346][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:02.347][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:02.347][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:02.348][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:02.350][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:02.351][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:02.351][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:02.352][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:02.353][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:02.354][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:02.354][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:02.355][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:02.356][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:02.357][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:02.357][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:02.358][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:02.359][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-09-07 16:03:02.360][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-09-07 16:03:02.360][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:02.361][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:02.362][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-09-07 16:03:02.363][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-09-07 16:03:02.363][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:02.364][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:02.365][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-09-07 16:03:02.366][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-09-07 16:03:02.367][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:02.367][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:02.373][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:02.374][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:02.374][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:02.375][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:02.376][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:02.377][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:02.377][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:02.378][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:02.379][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:02.379][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:02.380][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:02.381][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:02.382][ef$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:02.383][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:02.383][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:02.384][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:02.385][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:02.386][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:02.386][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:02.387][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:02.394][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2024-09-07 16:03:02.395][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-09-07 16:03:02.396][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:02.397][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:02.397][self$getBiodb()$getEntryFields()$get] Asked field names are: gene.symbol.
biodb.TRACE[2024-09-07 16:03:02.398][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-09-07 16:03:02.399][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:02.399][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:02.400][self$getBiodb()$getEntryFields()$get] Asked field names are: gene.symbol.
biodb.TRACE[2024-09-07 16:03:02.401][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-09-07 16:03:02.402][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:02.402][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:02.403][ef$get] Asked field names are: symbol.
biodb.TRACE[2024-09-07 16:03:02.404][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-09-07 16:03:02.404][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:02.405][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:02.406][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2024-09-07 16:03:02.407][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-09-07 16:03:02.408][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:02.408][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:02.415][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2024-09-07 16:03:02.416][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-09-07 16:03:02.417][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:02.418][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:02.418][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.location.
biodb.TRACE[2024-09-07 16:03:02.419][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-09-07 16:03:02.420][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:02.421][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:02.421][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.location.
biodb.TRACE[2024-09-07 16:03:02.422][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-09-07 16:03:02.423][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:02.423][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:02.424][ef$get] Asked field names are: location.
biodb.TRACE[2024-09-07 16:03:02.425][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-09-07 16:03:02.426][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:02.426][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:02.427][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2024-09-07 16:03:02.428][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-09-07 16:03:02.428][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:02.429][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:02.436][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-09-07 16:03:02.437][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-09-07 16:03:02.438][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:02.439][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:02.439][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-09-07 16:03:02.440][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-09-07 16:03:02.441][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:02.441][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:02.442][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-09-07 16:03:02.443][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-09-07 16:03:02.444][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:02.444][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:02.445][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-09-07 16:03:02.446][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-09-07 16:03:02.447][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:02.447][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:02.448][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-09-07 16:03:02.449][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-09-07 16:03:02.450][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:02.450][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:02.457][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-09-07 16:03:02.458][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-09-07 16:03:02.459][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:02.460][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:02.460][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-09-07 16:03:02.461][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-09-07 16:03:02.462][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:02.463][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:02.463][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-09-07 16:03:02.464][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-09-07 16:03:02.465][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:02.465][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:02.466][ef$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-09-07 16:03:02.467][ef$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-09-07 16:03:02.468][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:02.468][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:02.469][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-09-07 16:03:02.470][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-09-07 16:03:02.470][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:02.471][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:02.478][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-09-07 16:03:02.479][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-09-07 16:03:02.480][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:02.481][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:02.481][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-09-07 16:03:02.482][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-09-07 16:03:02.483][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:02.483][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:02.484][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-09-07 16:03:02.485][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-09-07 16:03:02.486][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:02.486][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:02.487][ef$get] Asked field names are: description.
biodb.TRACE[2024-09-07 16:03:02.488][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-09-07 16:03:02.488][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:02.489][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:02.490][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-09-07 16:03:02.490][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-09-07 16:03:02.491][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:02.492][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:02.499][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:03:02.500][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:03:02.500][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:02.501][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:02.502][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:03:02.503][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:03:02.503][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:02.504][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:02.505][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:03:02.505][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:03:02.506][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:02.507][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:02.507][ef$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:03:02.508][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:03:02.509][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:02.509][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:02.510][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:03:02.511][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:03:02.512][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:02.512][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:02.519][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2024-09-07 16:03:02.520][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-09-07 16:03:02.521][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:02.522][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:02.522][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-09-07 16:03:02.523][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-09-07 16:03:02.524][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:02.530][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:02.531][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-09-07 16:03:02.532][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-09-07 16:03:02.532][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:02.533][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:02.534][ef$get] Asked field names are: sequence.
biodb.TRACE[2024-09-07 16:03:02.534][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-09-07 16:03:02.535][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:02.536][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:02.536][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2024-09-07 16:03:02.537][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-09-07 16:03:02.538][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:02.538][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:02.545][ef$get] Asked field names are: aa.seq.
biodb.TRACE[2024-09-07 16:03:02.546][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-09-07 16:03:02.547][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:02.548][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:02.552][ef$get] Asked field names are: aa.seq.location.
biodb.TRACE[2024-09-07 16:03:02.552][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-09-07 16:03:02.553][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:02.554][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:02.557][ef$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:02.558][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:02.559][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:02.559][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:02.563][ef$get] Asked field names are: description.
biodb.TRACE[2024-09-07 16:03:02.564][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-09-07 16:03:02.565][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:02.565][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:02.569][ef$get] Asked field names are: gene.symbol.
biodb.TRACE[2024-09-07 16:03:02.569][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-09-07 16:03:02.570][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:02.571][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:02.575][ef$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:03:02.575][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:03:02.576][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:02.577][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:02.580][ef$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-09-07 16:03:02.581][ef$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-09-07 16:03:02.582][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:02.582][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:02.586][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-09-07 16:03:02.587][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-09-07 16:03:02.587][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:02.588][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:02.592][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/bbs-3.20-bioc-longtests/meat/biodbNcbi.Rcheck/biodbNcbi/testref/entry-ncbi.gene-9606-content.xml".
biodb.DEBUG[2024-09-07 16:03:02.593][biodb$getFactory()$createEntryFromCo ...] Creating NCBI Gene entries from 1 content(s).
biodb.DEBUG[2024-09-07 16:03:02.594][biodb$getFactory()$createEntryFromCo ...] Parsing 1 NCBI Gene entries.
biodb.DEBUG[2024-09-07 16:03:02.595][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:03:02.596][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:03:02.596][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:03:02.600][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:03:02.601][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:03:02.601][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:03:02.602][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:03:02.603][ef$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:02.604][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:02.605][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:02.606][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:02.606][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:02.607][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:02.608][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:02.609][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:02.609][ef$get] Asked field names are: description.
biodb.TRACE[2024-09-07 16:03:02.610][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-09-07 16:03:02.611][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:02.611][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:02.612][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-09-07 16:03:02.613][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-09-07 16:03:02.614][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:02.615][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:02.615][ef$get] Asked field names are: location.
biodb.TRACE[2024-09-07 16:03:02.616][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-09-07 16:03:02.617][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:02.618][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:02.618][ef$get] Asked field names are: symbol.
biodb.TRACE[2024-09-07 16:03:02.619][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-09-07 16:03:02.620][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:02.621][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:02.621][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2024-09-07 16:03:02.622][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-09-07 16:03:02.623][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:02.624][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:02.624][ef$get] Asked field names are: synonyms.
biodb.TRACE[2024-09-07 16:03:02.625][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:03:02.626][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:02.627][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:02.627][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-09-07 16:03:02.628][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-09-07 16:03:02.629][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:02.629][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:02.630][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-09-07 16:03:02.631][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-09-07 16:03:02.632][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:02.633][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:02.634][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-09-07 16:03:02.634][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-09-07 16:03:02.635][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:02.636][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:02.637][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:02.637][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:02.638][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:02.639][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:02.639][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-09-07 16:03:02.640][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-09-07 16:03:02.641][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:02.641][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:02.642][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:02.643][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:02.644][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:02.644][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:02.645][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:02.646][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:02.647][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:02.647][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:02.648][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:02.649][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:02.649][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:02.650][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:02.651][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:02.652][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:02.652][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:02.653][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:02.654][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:02.655][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:02.655][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:02.656][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:02.657][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:02.657][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:02.658][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:02.659][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:03:02.660][biodb$getFactory()$createEntryFromCo ...] Accession numbers: 9606.
biodb.TRACE[2024-09-07 16:03:02.661][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-09-07 16:03:02.662][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-09-07 16:03:02.663][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:02.663][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:02.664][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-09-07 16:03:02.665][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-09-07 16:03:02.665][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:02.666][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:02.667][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-09-07 16:03:02.668][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-09-07 16:03:02.668][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:02.669][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:02.670][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-09-07 16:03:02.671][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-09-07 16:03:02.671][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:02.672][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:02.673][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-09-07 16:03:02.673][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-09-07 16:03:02.674][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:02.675][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:02.675][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-09-07 16:03:02.676][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-09-07 16:03:02.677][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:02.678][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:02.678][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-09-07 16:03:02.679][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-09-07 16:03:02.680][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:02.680][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:02.682][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:02.682][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:02.683][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:02.684][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:02.688][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-09-07 16:03:02.689][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-09-07 16:03:02.690][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:02.690][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:02.694][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:02.695][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:02.696][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:02.696][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:02.697][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:02.698][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:02.698][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:02.699][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:02.700][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:02.701][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:02.701][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:02.702][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:02.704][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:02.705][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:02.705][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:02.706][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:02.707][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:02.707][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:02.708][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:02.709][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:02.709][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:02.710][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:02.711][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:02.712][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:02.712][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-09-07 16:03:02.713][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-09-07 16:03:02.714][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:02.714][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:02.715][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-09-07 16:03:02.716][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-09-07 16:03:02.717][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:02.717][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:02.718][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-09-07 16:03:02.719][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-09-07 16:03:02.719][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:02.720][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:02.726][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:02.727][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:02.727][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:02.728][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:02.729][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:02.729][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:02.730][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:02.731][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:02.732][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:02.732][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:02.733][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:02.734][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:02.734][ef$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:02.735][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:02.736][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:02.737][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:02.737][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:02.738][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:02.739][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:02.739][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:02.746][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2024-09-07 16:03:02.747][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-09-07 16:03:02.748][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:02.748][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:02.749][self$getBiodb()$getEntryFields()$get] Asked field names are: gene.symbol.
biodb.TRACE[2024-09-07 16:03:02.750][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-09-07 16:03:02.751][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:02.751][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:02.752][self$getBiodb()$getEntryFields()$get] Asked field names are: gene.symbol.
biodb.TRACE[2024-09-07 16:03:02.753][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-09-07 16:03:02.753][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:02.754][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:02.755][ef$get] Asked field names are: symbol.
biodb.TRACE[2024-09-07 16:03:02.756][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-09-07 16:03:02.756][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:02.757][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:02.758][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2024-09-07 16:03:02.758][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-09-07 16:03:02.759][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:02.760][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:02.767][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-09-07 16:03:02.767][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-09-07 16:03:02.768][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:02.769][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:02.770][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-09-07 16:03:02.770][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-09-07 16:03:02.771][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:02.772][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:02.772][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-09-07 16:03:02.773][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-09-07 16:03:02.774][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:02.775][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:02.775][ef$get] Asked field names are: description.
biodb.TRACE[2024-09-07 16:03:02.776][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-09-07 16:03:02.777][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:02.777][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:02.778][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-09-07 16:03:02.779][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-09-07 16:03:02.780][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:02.780][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:02.787][ef$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:02.788][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:02.789][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:02.789][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:02.793][ef$get] Asked field names are: description.
biodb.TRACE[2024-09-07 16:03:02.794][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-09-07 16:03:02.795][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:02.795][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:02.799][ef$get] Asked field names are: gene.symbol.
biodb.TRACE[2024-09-07 16:03:02.800][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-09-07 16:03:02.805][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:02.806][ef$get] fields variable is a list.
biodb.INFO [2024-09-07 16:03:02.812][biodb::testThat]
biodb.INFO [2024-09-07 16:03:02.812][biodb::testThat] Running test function  test.rt.unit  (" RT unit is defined when there is an RT value. ").
biodb.INFO [2024-09-07 16:03:02.813][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-09-07 16:03:02.814][biodb::testThat]
biodb.DEBUG[2024-09-07 16:03:02.815][private$loadEntries] Creating entries from ids [8]: "2833, 3002, 3627, 4316, 50943, 5551, 916, 9606".
biodb.DEBUG[2024-09-07 16:03:02.816][conn$getEntryContent] Get NCBI Gene entry content(s) for 8 id(s)...
biodb.TRACE[2024-09-07 16:03:02.817][cch$loadFileContent] Trying to load 8 files from cache: [8]: "2833, 3002, 3627, 4316, 50943, 5551, 916, 9606".
biodb.TRACE[2024-09-07 16:03:02.819][cch$loadFileContent] file.exist = [8]: "TRUE, TRUE, TRUE, TRUE, TRUE, TRUE, TRUE, TRUE".
biodb.TRACE[2024-09-07 16:03:02.848][loadFileContents] Loaded 8 files from cache: [8]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.gene-b6d7417e507eb4f1a2e0047bde5295e8/2833.xml, /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.gene-b6d7417e507eb4f1a2e0047bde5295e8/3002.xml, /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.gene-b6d7417e507eb4f1a2e0047bde5295e8/3627.xml, /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.gene-b6d7417e507eb4f1a2e0047bde5295e8/4316.xml, /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.gene-b6d7417e507eb4f1a2e0047bde5295e8/50943.xml, /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.gene-b6d7417e507eb4f1a2e0047bde5295e8/5551.xml, /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.gene-b6d7417e507eb4f1a2e0047bde5295e8/916.xml, /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.gene-b6d7417e507eb4f1a2e0047bde5295e8/9606.xml".
biodb.DEBUG[2024-09-07 16:03:02.850][conn$getEntryContent] 8 NCBI Gene entry content(s) loaded from cache.
biodb.DEBUG[2024-09-07 16:03:02.850][self$createEntryFromContent] Creating NCBI Gene entries from 8 content(s).
biodb.DEBUG[2024-09-07 16:03:02.851][self$createEntryFromContent] Parsing 8 NCBI Gene entries.
biodb.DEBUG[2024-09-07 16:03:02.852][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:03:02.853][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:03:02.854][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:03:02.858][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:03:02.858][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:03:02.859][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:03:02.860][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:03:02.869][ef$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:02.870][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:02.870][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:02.871][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:02.872][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:02.873][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:02.874][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:02.874][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:02.875][ef$get] Asked field names are: description.
biodb.TRACE[2024-09-07 16:03:02.876][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-09-07 16:03:02.876][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:02.877][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:02.878][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-09-07 16:03:02.879][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-09-07 16:03:02.880][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:02.881][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:02.881][ef$get] Asked field names are: location.
biodb.TRACE[2024-09-07 16:03:02.882][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-09-07 16:03:02.883][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:02.883][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:02.885][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2024-09-07 16:03:02.885][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-09-07 16:03:02.886][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:02.887][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:02.888][ef$get] Asked field names are: symbol.
biodb.TRACE[2024-09-07 16:03:02.888][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-09-07 16:03:02.889][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:02.890][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:02.891][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2024-09-07 16:03:02.891][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-09-07 16:03:02.892][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:02.893][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:02.894][ef$get] Asked field names are: synonyms.
biodb.TRACE[2024-09-07 16:03:02.894][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:03:02.895][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:02.896][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:02.897][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2024-09-07 16:03:02.898][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:03:02.898][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:02.899][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:02.900][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-09-07 16:03:02.900][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-09-07 16:03:02.901][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:02.902][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:02.904][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-09-07 16:03:02.904][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-09-07 16:03:02.905][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:02.906][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:02.908][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-09-07 16:03:02.909][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-09-07 16:03:02.910][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:02.910][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:02.911][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-09-07 16:03:02.912][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-09-07 16:03:02.913][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:02.913][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:02.914][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-09-07 16:03:02.915][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-09-07 16:03:02.915][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:02.916][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:02.917][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:02.917][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:02.918][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:02.919][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:02.919][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-09-07 16:03:02.920][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-09-07 16:03:02.921][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:02.922][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:02.922][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:02.923][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:02.924][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:02.924][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:02.925][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:02.926][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:02.926][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:02.927][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:02.928][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:02.929][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:02.929][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:02.930][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:03:02.931][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:03:02.931][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:03:02.932][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:03:02.936][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:03:02.937][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:03:02.938][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:03:02.938][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:03:02.948][ef$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:02.949][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:02.950][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:02.950][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:02.952][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:02.952][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:02.953][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:02.954][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:02.955][ef$get] Asked field names are: description.
biodb.TRACE[2024-09-07 16:03:02.955][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-09-07 16:03:02.956][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:02.957][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:02.958][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-09-07 16:03:02.959][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-09-07 16:03:02.959][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:02.960][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:02.961][ef$get] Asked field names are: location.
biodb.TRACE[2024-09-07 16:03:02.961][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-09-07 16:03:02.962][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:02.963][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:02.964][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2024-09-07 16:03:02.965][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-09-07 16:03:02.965][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:02.966][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:02.967][ef$get] Asked field names are: symbol.
biodb.TRACE[2024-09-07 16:03:02.967][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-09-07 16:03:02.968][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:02.969][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:02.970][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2024-09-07 16:03:02.971][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-09-07 16:03:02.971][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:02.972][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:02.973][ef$get] Asked field names are: synonyms.
biodb.TRACE[2024-09-07 16:03:02.974][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:03:02.974][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:02.975][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:02.976][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2024-09-07 16:03:02.977][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:03:02.978][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:02.978][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:02.979][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-09-07 16:03:02.980][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-09-07 16:03:02.981][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:02.981][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:02.983][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-09-07 16:03:02.984][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-09-07 16:03:02.985][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:02.985][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:02.988][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-09-07 16:03:02.989][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-09-07 16:03:02.990][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:02.990][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:02.991][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-09-07 16:03:02.992][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-09-07 16:03:02.993][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:02.993][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:02.994][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-09-07 16:03:02.995][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-09-07 16:03:02.995][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:02.996][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:02.997][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:02.998][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:02.998][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:02.999][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:03.000][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-09-07 16:03:03.000][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-09-07 16:03:03.001][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:03.002][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:03.002][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:03.003][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:03.004][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:03.005][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:03.005][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:03.006][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:03.007][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:03.007][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:03.008][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:03.009][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:03.009][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:03.010][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:03:03.011][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:03:03.012][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:03:03.012][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:03:03.017][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:03:03.017][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:03:03.018][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:03:03.018][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:03:03.034][ef$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:03.035][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:03.036][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:03.036][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:03.038][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:03.039][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:03.039][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:03.040][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:03.041][ef$get] Asked field names are: description.
biodb.TRACE[2024-09-07 16:03:03.042][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-09-07 16:03:03.042][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:03.043][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:03.045][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-09-07 16:03:03.045][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-09-07 16:03:03.046][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:03.047][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:03.048][ef$get] Asked field names are: location.
biodb.TRACE[2024-09-07 16:03:03.048][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-09-07 16:03:03.049][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:03.050][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:03.051][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2024-09-07 16:03:03.052][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-09-07 16:03:03.053][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:03.053][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:03.054][ef$get] Asked field names are: symbol.
biodb.TRACE[2024-09-07 16:03:03.055][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-09-07 16:03:03.055][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:03.056][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:03.058][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2024-09-07 16:03:03.059][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-09-07 16:03:03.059][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:03.060][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:03.061][ef$get] Asked field names are: synonyms.
biodb.TRACE[2024-09-07 16:03:03.061][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:03:03.062][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:03.063][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:03.064][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2024-09-07 16:03:03.065][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:03:03.066][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:03.066][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:03.067][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-09-07 16:03:03.068][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-09-07 16:03:03.069][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:03.069][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:03.072][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-09-07 16:03:03.073][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-09-07 16:03:03.074][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:03.075][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:03.077][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-09-07 16:03:03.078][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-09-07 16:03:03.079][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:03.080][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:03.080][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-09-07 16:03:03.081][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-09-07 16:03:03.082][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:03.083][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:03.083][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-09-07 16:03:03.084][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-09-07 16:03:03.085][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:03.085][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:03.086][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:03.087][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:03.088][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:03.088][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:03.089][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-09-07 16:03:03.090][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-09-07 16:03:03.090][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:03.091][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:03.092][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:03.093][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:03.093][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:03.094][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:03.095][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:03.095][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:03.096][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:03.097][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:03.098][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:03.098][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:03.099][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:03.100][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:03:03.101][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:03:03.102][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:03:03.102][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:03:03.107][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:03:03.107][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:03:03.108][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:03:03.109][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:03:03.120][ef$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:03.121][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:03.122][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:03.122][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:03.124][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:03.125][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:03.125][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:03.126][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:03.127][ef$get] Asked field names are: description.
biodb.TRACE[2024-09-07 16:03:03.128][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-09-07 16:03:03.128][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:03.129][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:03.130][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-09-07 16:03:03.131][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-09-07 16:03:03.132][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:03.132][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:03.133][ef$get] Asked field names are: location.
biodb.TRACE[2024-09-07 16:03:03.134][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-09-07 16:03:03.135][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:03.135][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:03.137][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2024-09-07 16:03:03.138][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-09-07 16:03:03.138][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:03.139][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:03.140][ef$get] Asked field names are: symbol.
biodb.TRACE[2024-09-07 16:03:03.140][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-09-07 16:03:03.141][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:03.142][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:03.143][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2024-09-07 16:03:03.144][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-09-07 16:03:03.145][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:03.145][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:03.146][ef$get] Asked field names are: synonyms.
biodb.TRACE[2024-09-07 16:03:03.147][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:03:03.148][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:03.148][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:03.150][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2024-09-07 16:03:03.151][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:03:03.151][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:03.152][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:03.153][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-09-07 16:03:03.166][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-09-07 16:03:03.167][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:03.167][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:03.170][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-09-07 16:03:03.170][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-09-07 16:03:03.171][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:03.172][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:03.174][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-09-07 16:03:03.175][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-09-07 16:03:03.176][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:03.177][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:03.177][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-09-07 16:03:03.178][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-09-07 16:03:03.179][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:03.179][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:03.180][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-09-07 16:03:03.181][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-09-07 16:03:03.182][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:03.182][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:03.183][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:03.184][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:03.184][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:03.185][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:03.186][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-09-07 16:03:03.186][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-09-07 16:03:03.187][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:03.188][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:03.189][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:03.189][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:03.190][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:03.191][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:03.191][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:03.192][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:03.193][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:03.193][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:03.194][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:03.195][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:03.196][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:03.196][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:03:03.197][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:03:03.198][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:03:03.198][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:03:03.203][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:03:03.203][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:03:03.204][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:03:03.204][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:03:03.229][ef$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:03.230][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:03.230][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:03.231][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:03.233][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:03.234][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:03.235][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:03.235][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:03.236][ef$get] Asked field names are: description.
biodb.TRACE[2024-09-07 16:03:03.237][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-09-07 16:03:03.238][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:03.238][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:03.240][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-09-07 16:03:03.241][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-09-07 16:03:03.242][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:03.242][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:03.243][ef$get] Asked field names are: location.
biodb.TRACE[2024-09-07 16:03:03.244][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-09-07 16:03:03.245][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:03.245][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:03.247][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2024-09-07 16:03:03.248][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-09-07 16:03:03.249][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:03.249][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:03.250][ef$get] Asked field names are: symbol.
biodb.TRACE[2024-09-07 16:03:03.251][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-09-07 16:03:03.252][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:03.252][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:03.255][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2024-09-07 16:03:03.255][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-09-07 16:03:03.256][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:03.257][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:03.258][ef$get] Asked field names are: synonyms.
biodb.TRACE[2024-09-07 16:03:03.258][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:03:03.259][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:03.260][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:03.262][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2024-09-07 16:03:03.263][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:03:03.263][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:03.264][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:03.265][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-09-07 16:03:03.265][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-09-07 16:03:03.266][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:03.267][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:03.271][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-09-07 16:03:03.272][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-09-07 16:03:03.273][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:03.273][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:03.278][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-09-07 16:03:03.279][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-09-07 16:03:03.280][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:03.280][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:03.281][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-09-07 16:03:03.282][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-09-07 16:03:03.283][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:03.283][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:03.284][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-09-07 16:03:03.285][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-09-07 16:03:03.285][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:03.286][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:03.287][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:03.288][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:03.288][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:03.289][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:03.290][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-09-07 16:03:03.291][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-09-07 16:03:03.291][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:03.292][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:03.293][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:03.294][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:03.295][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:03.295][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:03.296][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:03.297][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:03.297][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:03.298][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:03.299][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:03.300][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:03.300][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:03.301][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:03:03.302][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:03:03.302][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:03:03.303][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:03:03.308][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:03:03.308][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:03:03.309][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:03:03.310][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:03:03.318][ef$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:03.318][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:03.319][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:03.320][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:03.321][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:03.322][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:03.322][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:03.323][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:03.324][ef$get] Asked field names are: description.
biodb.TRACE[2024-09-07 16:03:03.325][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-09-07 16:03:03.325][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:03.326][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:03.327][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-09-07 16:03:03.328][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-09-07 16:03:03.329][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:03.330][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:03.330][ef$get] Asked field names are: location.
biodb.TRACE[2024-09-07 16:03:03.331][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-09-07 16:03:03.332][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:03.333][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:03.334][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2024-09-07 16:03:03.335][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-09-07 16:03:03.336][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:03.336][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:03.337][ef$get] Asked field names are: symbol.
biodb.TRACE[2024-09-07 16:03:03.338][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-09-07 16:03:03.339][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:03.339][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:03.340][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2024-09-07 16:03:03.341][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-09-07 16:03:03.342][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:03.342][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:03.343][ef$get] Asked field names are: synonyms.
biodb.TRACE[2024-09-07 16:03:03.344][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:03:03.345][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:03.346][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:03.347][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2024-09-07 16:03:03.347][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:03:03.348][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:03.349][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:03.350][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-09-07 16:03:03.350][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-09-07 16:03:03.351][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:03.352][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:03.354][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-09-07 16:03:03.354][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-09-07 16:03:03.355][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:03.356][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:03.358][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-09-07 16:03:03.358][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-09-07 16:03:03.359][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:03.360][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:03.361][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-09-07 16:03:03.361][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-09-07 16:03:03.362][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:03.363][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:03.363][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-09-07 16:03:03.364][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-09-07 16:03:03.365][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:03.366][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:03.366][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:03.367][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:03.368][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:03.368][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:03.369][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-09-07 16:03:03.370][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-09-07 16:03:03.371][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:03.371][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:03.372][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:03.373][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:03.373][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:03.374][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:03.375][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:03.376][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:03.376][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:03.377][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:03.378][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:03.378][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:03.379][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:03.380][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:03:03.381][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:03:03.381][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:03:03.382][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:03:03.386][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:03:03.387][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:03:03.387][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:03:03.388][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:03:03.397][ef$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:03.398][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:03.399][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:03.399][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:03.401][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:03.401][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:03.402][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:03.403][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:03.404][ef$get] Asked field names are: description.
biodb.TRACE[2024-09-07 16:03:03.404][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-09-07 16:03:03.405][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:03.406][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:03.407][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-09-07 16:03:03.408][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-09-07 16:03:03.409][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:03.409][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:03.410][ef$get] Asked field names are: location.
biodb.TRACE[2024-09-07 16:03:03.411][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-09-07 16:03:03.412][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:03.413][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:03.414][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2024-09-07 16:03:03.415][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-09-07 16:03:03.416][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:03.416][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:03.417][ef$get] Asked field names are: symbol.
biodb.TRACE[2024-09-07 16:03:03.418][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-09-07 16:03:03.419][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:03.419][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:03.420][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2024-09-07 16:03:03.421][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-09-07 16:03:03.422][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:03.423][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:03.424][ef$get] Asked field names are: synonyms.
biodb.TRACE[2024-09-07 16:03:03.424][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:03:03.425][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:03.426][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:03.427][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2024-09-07 16:03:03.428][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:03:03.428][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:03.429][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:03.430][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-09-07 16:03:03.431][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-09-07 16:03:03.432][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:03.432][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:03.434][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-09-07 16:03:03.435][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-09-07 16:03:03.435][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:03.436][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:03.438][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-09-07 16:03:03.439][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-09-07 16:03:03.440][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:03.440][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:03.441][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-09-07 16:03:03.442][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-09-07 16:03:03.443][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:03.444][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:03.444][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-09-07 16:03:03.445][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-09-07 16:03:03.446][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:03.446][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:03.447][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:03.448][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:03.449][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:03.449][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:03.450][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-09-07 16:03:03.451][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-09-07 16:03:03.451][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:03.452][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:03.453][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:03.454][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:03.454][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:03.455][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:03.456][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:03.457][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:03.457][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:03.458][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:03.459][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:03.460][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:03.460][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:03.461][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:03:03.462][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:03:03.463][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:03:03.463][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:03:03.468][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:03:03.468][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:03:03.469][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:03:03.470][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:03:03.471][ef$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:03.472][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:03.473][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:03.473][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:03.474][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:03.475][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:03.476][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:03.477][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:03.477][ef$get] Asked field names are: description.
biodb.TRACE[2024-09-07 16:03:03.478][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-09-07 16:03:03.479][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:03.480][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:03.481][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-09-07 16:03:03.482][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-09-07 16:03:03.482][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:03.483][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:03.484][ef$get] Asked field names are: location.
biodb.TRACE[2024-09-07 16:03:03.485][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-09-07 16:03:03.486][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:03.486][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:03.487][ef$get] Asked field names are: symbol.
biodb.TRACE[2024-09-07 16:03:03.488][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-09-07 16:03:03.489][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:03.489][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:03.490][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2024-09-07 16:03:03.491][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-09-07 16:03:03.495][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:03.505][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:03.506][ef$get] Asked field names are: synonyms.
biodb.TRACE[2024-09-07 16:03:03.507][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:03:03.508][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:03.508][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:03.509][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-09-07 16:03:03.510][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-09-07 16:03:03.510][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:03.511][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:03.512][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-09-07 16:03:03.513][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-09-07 16:03:03.513][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:03.514][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:03.515][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-09-07 16:03:03.516][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-09-07 16:03:03.516][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:03.517][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:03.518][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:03.519][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:03.519][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:03.520][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:03.521][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-09-07 16:03:03.521][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-09-07 16:03:03.522][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:03.523][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:03.523][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:03.524][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:03.525][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:03.526][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:03.526][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:03.527][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:03.528][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:03.528][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:03.529][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:03.530][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:03.530][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:03.531][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:03.532][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:03.533][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:03.534][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:03.534][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:03.535][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:03.536][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:03.536][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:03.537][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:03.538][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:03.539][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:03.539][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:03.540][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:03.541][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:03.541][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:03.542][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:03.543][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:03.544][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:03.544][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:03.545][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:03.546][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:03.546][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:03.547][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:03.548][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:03.548][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:03.549][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:03.550][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:03.551][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:03.552][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:03.552][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:03.553][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:03.554][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:03.554][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:03.555][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:03.556][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:03.557][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:03.557][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:03.558][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:03.559][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:03.559][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:03.560][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:03.561][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:03.562][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:03.563][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:03.563][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:03.564][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:03.565][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:03.565][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:03.566][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:03.567][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:03.567][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:03.568][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:03.569][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:03.569][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:03.570][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:03.571][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:03.572][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:03.572][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:03.573][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:03.574][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:03.574][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:03.575][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:03.576][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:03.576][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:03.577][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:03.578][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:03.579][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:03.579][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:03.580][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:03.581][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:03.581][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:03.582][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:03.583][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:03.583][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:03.584][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:03.585][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:03.586][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:03.586][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:03.587][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:03.588][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:03.588][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:03.589][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:03.590][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:03.591][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:03.591][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:03.592][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:03.593][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:03.594][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:03.594][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:03.595][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:03.596][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:03.596][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:03.597][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:03.598][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:03.599][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:03.599][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:03.600][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:03:03.601][self$createEntryFromContent] Accession numbers: 2833, 3002, 3627, 4316, 50943, 5551, 916, 9606.
biodb.TRACE[2024-09-07 16:03:03.602][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2024-09-07 16:03:03.602][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2024-09-07 16:03:03.603][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:03.604][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:03.604][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2024-09-07 16:03:03.605][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2024-09-07 16:03:03.606][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:03.607][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:03.607][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2024-09-07 16:03:03.608][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2024-09-07 16:03:03.609][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:03.610][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:03.614][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2024-09-07 16:03:03.615][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2024-09-07 16:03:03.616][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:03.616][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:03.617][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2024-09-07 16:03:03.618][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2024-09-07 16:03:03.619][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:03.619][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:03.620][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2024-09-07 16:03:03.621][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2024-09-07 16:03:03.621][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:03.622][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:03.626][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2024-09-07 16:03:03.627][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2024-09-07 16:03:03.628][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:03.629][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:03.630][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2024-09-07 16:03:03.630][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2024-09-07 16:03:03.631][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:03.632][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:03.633][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2024-09-07 16:03:03.633][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2024-09-07 16:03:03.634][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:03.635][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:03.639][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2024-09-07 16:03:03.640][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2024-09-07 16:03:03.641][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:03.642][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:03.642][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2024-09-07 16:03:03.643][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2024-09-07 16:03:03.644][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:03.644][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:03.645][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2024-09-07 16:03:03.646][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2024-09-07 16:03:03.647][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:03.648][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:03.652][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2024-09-07 16:03:03.653][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2024-09-07 16:03:03.654][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:03.654][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:03.655][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2024-09-07 16:03:03.656][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2024-09-07 16:03:03.657][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:03.657][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:03.658][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2024-09-07 16:03:03.659][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2024-09-07 16:03:03.660][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:03.660][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:03.665][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2024-09-07 16:03:03.666][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2024-09-07 16:03:03.666][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:03.667][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:03.668][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2024-09-07 16:03:03.669][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2024-09-07 16:03:03.669][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:03.670][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:03.671][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2024-09-07 16:03:03.671][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2024-09-07 16:03:03.672][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:03.673][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:03.677][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2024-09-07 16:03:03.678][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2024-09-07 16:03:03.678][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:03.679][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:03.680][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2024-09-07 16:03:03.681][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2024-09-07 16:03:03.681][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:03.682][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:03.683][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2024-09-07 16:03:03.684][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2024-09-07 16:03:03.684][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:03.685][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:03.689][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2024-09-07 16:03:03.690][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2024-09-07 16:03:03.691][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:03.691][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:03.692][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2024-09-07 16:03:03.693][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2024-09-07 16:03:03.694][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:03.694][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:03.695][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2024-09-07 16:03:03.696][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2024-09-07 16:03:03.697][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:03.697][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2024-09-07 16:03:03.705][biodb::testThat]
biodb.INFO [2024-09-07 16:03:03.705][biodb::testThat] Running test function  test.searchForEntries  (" We can search for an entry by searchable field ").
biodb.INFO [2024-09-07 16:03:03.706][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-09-07 16:03:03.707][biodb::testThat]
biodb.TRACE[2024-09-07 16:03:03.709][ef$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:03:03.710][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:03:03.710][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:03.711][ef$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:03:03.712][function(conn, opt)] Testing searchForEntries() with entry "2833" and field "name".
biodb.TRACE[2024-09-07 16:03:03.722][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:03:03.723][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:03:03.723][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:03.724][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:03.725][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:03:03.726][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:03:03.726][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:03.727][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:03.728][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:03:03.729][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:03:03.729][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:03.730][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:03:03.733][function(conn, opt)] With value "GPR9".
biodb.DEBUG[2024-09-07 16:03:03.737][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=gene&term="GPR9"[Gene Name]&retmax=1".
biodb.DEBUG[2024-09-07 16:03:03.739][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-09-07 16:03:03.740][cch$loadFileContent] Trying to load 1 files from cache: [1]: "21e81c63f052370fa801f15c9311a3f4".
biodb.TRACE[2024-09-07 16:03:03.741][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-09-07 16:03:03.743][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.gene-b6d7417e507eb4f1a2e0047bde5295e8/21e81c63f052370fa801f15c9311a3f4.content".
biodb.DEBUG[2024-09-07 16:03:03.744][function(conn, opt)] With found IDs [1]: "2833".
biodb.INFO [2024-09-07 16:03:03.757][biodb::testThat]
biodb.INFO [2024-09-07 16:03:03.758][biodb::testThat] Running test function  test.searchByName  (" We can search for an entry by name. ").
biodb.INFO [2024-09-07 16:03:03.759][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-09-07 16:03:03.759][biodb::testThat]
biodb.TRACE[2024-09-07 16:03:03.768][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:03:03.769][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:03:03.769][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:03.770][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:03.771][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:03:03.771][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:03:03.772][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:03.773][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:03.774][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:03:03.775][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:03:03.775][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:03.776][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:03:03.799][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=gene&term="GPR9"[Gene Name]&retmax=1".
biodb.DEBUG[2024-09-07 16:03:03.801][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-09-07 16:03:03.802][cch$loadFileContent] Trying to load 1 files from cache: [1]: "21e81c63f052370fa801f15c9311a3f4".
biodb.TRACE[2024-09-07 16:03:03.803][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-09-07 16:03:03.804][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.gene-b6d7417e507eb4f1a2e0047bde5295e8/21e81c63f052370fa801f15c9311a3f4.content".
biodb.INFO [2024-09-07 16:03:03.816][biodb::testThat]
biodb.INFO [2024-09-07 16:03:03.817][biodb::testThat] Running test function  testEntryLoading  (" We can load an entry from the database. ").
biodb.INFO [2024-09-07 16:03:03.818][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-09-07 16:03:03.819][biodb::testThat]
biodb.TRACE[2024-09-07 16:03:03.826][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-09-07 16:03:03.827][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-09-07 16:03:03.828][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:03.828][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:03.829][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-09-07 16:03:03.830][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-09-07 16:03:03.831][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:03.831][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:03.832][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-09-07 16:03:03.833][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-09-07 16:03:03.834][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:03.834][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:03.835][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-09-07 16:03:03.836][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-09-07 16:03:03.836][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:03.837][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:03.838][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-09-07 16:03:03.838][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-09-07 16:03:03.839][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:03.840][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:03:03.840][private$computeField] Compute value for field "aa.seq".
biodb.TRACE[2024-09-07 16:03:03.841][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-09-07 16:03:03.842][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-09-07 16:03:03.843][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:03.843][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:03.844][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-09-07 16:03:03.845][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-09-07 16:03:03.845][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:03.846][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:03.847][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-09-07 16:03:03.848][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-09-07 16:03:03.848][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:03.849][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:03.850][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-09-07 16:03:03.850][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-09-07 16:03:03.851][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:03.852][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:03.852][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-09-07 16:03:03.853][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-09-07 16:03:03.854][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:03.855][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:03.855][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-09-07 16:03:03.856][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-09-07 16:03:03.857][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:03.857][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:03.858][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-09-07 16:03:03.859][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-09-07 16:03:03.860][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:03.860][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:03.862][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-09-07 16:03:03.863][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-09-07 16:03:03.863][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:03.864][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:03.865][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-09-07 16:03:03.866][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-09-07 16:03:03.866][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:03.867][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:03.868][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-09-07 16:03:03.868][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-09-07 16:03:03.869][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:03.870][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:03.871][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-09-07 16:03:03.871][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-09-07 16:03:03.872][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:03.873][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:03.874][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-09-07 16:03:03.874][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-09-07 16:03:03.875][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:03.876][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:03.876][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-09-07 16:03:03.877][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-09-07 16:03:03.878][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:03.879][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2024-09-07 16:03:03.884][biodb::testThat]
biodb.INFO [2024-09-07 16:03:03.885][biodb::testThat] Running test function  test.entry.page.url  (" We can get a URL pointing to the entry page. ").
biodb.INFO [2024-09-07 16:03:03.885][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-09-07 16:03:03.886][biodb::testThat]
biodb.INFO [2024-09-07 16:03:03.895][biodb::testThat]
biodb.INFO [2024-09-07 16:03:03.895][biodb::testThat] Running test function  test.entry.image.url  (" We can get a URL pointing to the entry image. ").
biodb.INFO [2024-09-07 16:03:03.896][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-09-07 16:03:03.897][biodb::testThat]
biodb.INFO [2024-09-07 16:03:03.903][biodb::testThat]
biodb.INFO [2024-09-07 16:03:03.903][biodb::testThat] Running test function  test.entry.page.url.download  (" The entry page URL can be downloaded. ").
biodb.INFO [2024-09-07 16:03:03.904][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-09-07 16:03:03.905][biodb::testThat]
biodb.DEBUG[2024-09-07 16:03:03.908][function(conn, opt)] Trying to download "https://www.ncbi.nlm.nih.gov/gene?term=2833".
biodb.DEBUG[2024-09-07 16:03:06.992][getUrlContent] Use RCurl for downloading content of URL https://www.ncbi.nlm.nih.gov/gene?term=2833.
biodb.INFO [2024-09-07 16:03:10.216][biodb::testThat]
biodb.INFO [2024-09-07 16:03:10.217][biodb::testThat] Running test function  test.entry.image.url.download  (" The entry image URL can be downloaded. ").
biodb.INFO [2024-09-07 16:03:10.218][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-09-07 16:03:10.219][biodb::testThat]
biodb.INFO [2024-09-07 16:03:10.223][biodb$terminate] Closing BiodbMain instance...
biodb.DEBUG[2024-09-07 16:03:10.224][private$conn[[conn]]$.__enclos_env__ ...] Unregister connector ncbi.gene from the request scheduler
biodb.INFO [2024-09-07 16:03:10.225][self$deleteConn] Connector "ncbi.gene" deleted.
biodb.DEBUG[2024-09-07 16:03:10.226][private$conn[[conn]]$.__enclos_env__ ...] Unregister connector ncbi.ccds from the request scheduler
biodb.INFO [2024-09-07 16:03:10.231][self$deleteConn] Connector "ncbi.ccds" deleted.
biodb.DEBUG[2024-09-07 16:03:10.232][notifyObservers] Notify observers for terminate.
biodb.DEBUG[2024-09-07 16:03:10.233][FUN] Trying to call function terminate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:03:10.233][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:03:10.234][FUN] Trying to call function terminate on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:03:10.235][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:03:10.235][FUN] Trying to call function terminate on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:03:10.236][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.INFO [2024-09-07 16:03:10.239][biodb::testContext]
biodb.INFO [2024-09-07 16:03:10.240][biodb::testContext] ********************************************************************************
biodb.INFO [2024-09-07 16:03:10.240][biodb::testContext] Test context - Pubchem comp long tests
biodb.INFO [2024-09-07 16:03:10.241][biodb::testContext] ********************************************************************************
biodb.INFO [2024-09-07 16:03:10.242][biodb::testContext]
biodb.INFO [2024-09-07 16:03:10.243][private$loadBiodbPkgsDefinitions] Loading definitions from package biodb version 1.13.0.
biodb.DEBUG[2024-09-07 16:03:10.244][self$loadDefinitions] Load definitions from file "/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/biodb/definitions.yml".
biodb.DEBUG[2024-09-07 16:03:10.247][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-09-07 16:03:10.248][self$getConfig()$define] Define config key allow.huge.downloads.
biodb.DEBUG[2024-09-07 16:03:10.249][self$set] Set key allow.huge.downloads to TRUE.
biodb.DEBUG[2024-09-07 16:03:10.249][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-09-07 16:03:10.250][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:03:10.251][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:03:10.251][self$getConfig()$define] Define config key autoload.extra.pkgs.
biodb.DEBUG[2024-09-07 16:03:10.252][self$set] Set key autoload.extra.pkgs to TRUE.
biodb.DEBUG[2024-09-07 16:03:10.253][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-09-07 16:03:10.253][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:03:10.254][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:03:10.255][self$getConfig()$define] Define config key cache.all.requests.
biodb.DEBUG[2024-09-07 16:03:10.256][self$set] Set key cache.all.requests to TRUE.
biodb.DEBUG[2024-09-07 16:03:10.256][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-09-07 16:03:10.257][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:03:10.257][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:03:10.258][self$getConfig()$define] Define config key cache.directory.
biodb.DEBUG[2024-09-07 16:03:10.259][self$getConfig()$define] Define config key cache.read.only.
biodb.DEBUG[2024-09-07 16:03:10.260][self$set] Set key cache.read.only to FALSE.
biodb.DEBUG[2024-09-07 16:03:10.260][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-09-07 16:03:10.261][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:03:10.262][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:03:10.262][self$getConfig()$define] Define config key cache.subfolders.
biodb.DEBUG[2024-09-07 16:03:10.263][self$getConfig()$define] Define config key cache.system.
biodb.DEBUG[2024-09-07 16:03:10.264][self$set] Set key cache.system to TRUE.
biodb.DEBUG[2024-09-07 16:03:10.264][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-09-07 16:03:10.265][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:03:10.266][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:03:10.267][self$getConfig()$define] Define config key use.cache.for.local.db.
biodb.DEBUG[2024-09-07 16:03:10.267][self$set] Set key use.cache.for.local.db to FALSE.
biodb.DEBUG[2024-09-07 16:03:10.268][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-09-07 16:03:10.269][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:03:10.269][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:03:10.270][self$getConfig()$define] Define config key dwnld.chunk.size.
biodb.DEBUG[2024-09-07 16:03:10.271][self$getConfig()$define] Define config key dwnld.timeout.
biodb.DEBUG[2024-09-07 16:03:10.272][self$set] Set key dwnld.timeout to 3600.
biodb.DEBUG[2024-09-07 16:03:10.272][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-09-07 16:03:10.273][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:03:10.274][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:03:10.274][self$getConfig()$define] Define config key compute.fields.
biodb.DEBUG[2024-09-07 16:03:10.275][self$set] Set key compute.fields to TRUE.
biodb.DEBUG[2024-09-07 16:03:10.276][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-09-07 16:03:10.276][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:03:10.277][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:03:10.278][self$getConfig()$define] Define config key factory.cache.
biodb.DEBUG[2024-09-07 16:03:10.278][self$getConfig()$define] Define config key force.locale.
biodb.DEBUG[2024-09-07 16:03:10.279][self$set] Set key force.locale to TRUE.
biodb.DEBUG[2024-09-07 16:03:10.280][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-09-07 16:03:10.281][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:03:10.281][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:03:10.282][self$getConfig()$define] Define config key longterm.cache.subfolder.
biodb.DEBUG[2024-09-07 16:03:10.283][self$getConfig()$define] Define config key msg.caution.lvl.
biodb.DEBUG[2024-09-07 16:03:10.284][self$getConfig()$define] Define config key msg.debug.lvl.
biodb.DEBUG[2024-09-07 16:03:10.284][self$getConfig()$define] Define config key msg.info.lvl.
biodb.DEBUG[2024-09-07 16:03:10.285][self$getConfig()$define] Define config key multival.field.sep.
biodb.DEBUG[2024-09-07 16:03:10.286][self$set] Set key multival.field.sep to ";".
biodb.DEBUG[2024-09-07 16:03:10.286][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-09-07 16:03:10.287][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:03:10.288][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:03:10.288][self$getConfig()$define] Define config key intra.field.name.sep.
biodb.DEBUG[2024-09-07 16:03:10.289][self$set] Set key intra.field.name.sep to ".".
biodb.DEBUG[2024-09-07 16:03:10.290][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-09-07 16:03:10.290][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:03:10.291][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:03:10.292][self$getConfig()$define] Define config key entries.sep.
biodb.DEBUG[2024-09-07 16:03:10.292][self$set] Set key entries.sep to "|".
biodb.DEBUG[2024-09-07 16:03:10.293][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-09-07 16:03:10.294][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:03:10.294][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:03:10.295][self$getConfig()$define] Define config key offline.
biodb.DEBUG[2024-09-07 16:03:10.296][self$set] Set key offline to FALSE.
biodb.DEBUG[2024-09-07 16:03:10.296][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-09-07 16:03:10.297][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:03:10.298][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:03:10.298][self$getConfig()$define] Define config key persistent.cache.impl.
biodb.DEBUG[2024-09-07 16:03:10.299][self$set] Set key persistent.cache.impl to "custom".
biodb.DEBUG[2024-09-07 16:03:10.300][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-09-07 16:03:10.300][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:03:10.301][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:03:10.302][self$getConfig()$define] Define config key proton.mass.
biodb.DEBUG[2024-09-07 16:03:10.302][self$set] Set key proton.mass to 1.0072765.
biodb.DEBUG[2024-09-07 16:03:10.303][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-09-07 16:03:10.304][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:03:10.304][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:03:10.305][self$getConfig()$define] Define config key shortterm.cache.subfolder.
biodb.DEBUG[2024-09-07 16:03:10.306][self$getConfig()$define] Define config key svn.binary.path.
biodb.DEBUG[2024-09-07 16:03:10.320][self$set] Set key svn.binary.path to "".
biodb.DEBUG[2024-09-07 16:03:10.321][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-09-07 16:03:10.322][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:03:10.322][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:03:10.323][self$getConfig()$define] Define config key test.functions.
biodb.DEBUG[2024-09-07 16:03:10.324][self$getConfig()$define] Define config key useragent.
biodb.DEBUG[2024-09-07 16:03:10.325][self$set] Set key useragent to "R Bioconductor biodb library.".
biodb.DEBUG[2024-09-07 16:03:10.325][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-09-07 16:03:10.326][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:03:10.326][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:03:10.327][self$getDbsInfo()$define] Define connector comp.csv.file.
biodb.DEBUG[2024-09-07 16:03:10.329][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-09-07 16:03:10.329][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields.".
biodb.DEBUG[2024-09-07 16:03:10.330][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-09-07 16:03:10.331][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-09-07 16:03:10.332][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-09-07 16:03:10.332][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-09-07 16:03:10.333][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-09-07 16:03:10.334][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-09-07 16:03:10.334][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2024-09-07 16:03:10.335][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-09-07 16:03:10.336][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-09-07 16:03:10.337][self$setPropertyValue] Setting property "name" to "Compound CSV File".
biodb.DEBUG[2024-09-07 16:03:10.337][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-09-07 16:03:10.338][self$setPropertyValue]
biodb.DEBUG[2024-09-07 16:03:10.339][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-09-07 16:03:10.339][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-09-07 16:03:10.339][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2024-09-07 16:03:10.339][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2024-09-07 16:03:10.339][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2024-09-07 16:03:10.339][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2024-09-07 16:03:10.340][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-09-07 16:03:10.341][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-09-07 16:03:10.342][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-09-07 16:03:10.342][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-09-07 16:03:10.343][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-09-07 16:03:10.344][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-09-07 16:03:10.345][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-09-07 16:03:10.345][self$setPropertyValue]
biodb.DEBUG[2024-09-07 16:03:10.346][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-09-07 16:03:10.347][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-09-07 16:03:10.347][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-09-07 16:03:10.348][self$setPropertyValue]
biodb.DEBUG[2024-09-07 16:03:10.349][self$getDbsInfo()$define] Define connector comp.sqlite.
biodb.DEBUG[2024-09-07 16:03:10.350][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-09-07 16:03:10.351][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside an SQLite file.".
biodb.DEBUG[2024-09-07 16:03:10.352][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-09-07 16:03:10.352][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-09-07 16:03:10.353][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-09-07 16:03:10.354][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-09-07 16:03:10.354][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-09-07 16:03:10.355][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-09-07 16:03:10.356][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2024-09-07 16:03:10.357][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-09-07 16:03:10.357][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-09-07 16:03:10.358][self$setPropertyValue] Setting property "name" to "Compound SQLite".
biodb.DEBUG[2024-09-07 16:03:10.359][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-09-07 16:03:10.360][self$setPropertyValue]
biodb.DEBUG[2024-09-07 16:03:10.360][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-09-07 16:03:10.361][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-09-07 16:03:10.361][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2024-09-07 16:03:10.361][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2024-09-07 16:03:10.361][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2024-09-07 16:03:10.361][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2024-09-07 16:03:10.362][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-09-07 16:03:10.368][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-09-07 16:03:10.374][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-09-07 16:03:10.374][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-09-07 16:03:10.375][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-09-07 16:03:10.376][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-09-07 16:03:10.376][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-09-07 16:03:10.377][self$setPropertyValue]
biodb.DEBUG[2024-09-07 16:03:10.378][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-09-07 16:03:10.378][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-09-07 16:03:10.379][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-09-07 16:03:10.380][self$setPropertyValue]
biodb.DEBUG[2024-09-07 16:03:10.380][self$getDbsInfo()$define] Define connector mass.csv.file.
biodb.DEBUG[2024-09-07 16:03:10.382][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-09-07 16:03:10.382][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields..".
biodb.DEBUG[2024-09-07 16:03:10.383][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-09-07 16:03:10.384][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-09-07 16:03:10.384][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-09-07 16:03:10.385][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-09-07 16:03:10.386][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-09-07 16:03:10.386][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-09-07 16:03:10.387][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2024-09-07 16:03:10.388][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-09-07 16:03:10.388][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2024-09-07 16:03:10.389][self$setPropertyValue] Setting property "name" to "Mass spectra CSV File".
biodb.DEBUG[2024-09-07 16:03:10.390][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-09-07 16:03:10.390][self$setPropertyValue]
biodb.DEBUG[2024-09-07 16:03:10.391][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-09-07 16:03:10.392][self$setPropertyValue]
biodb.DEBUG[2024-09-07 16:03:10.393][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-09-07 16:03:10.393][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-09-07 16:03:10.394][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-09-07 16:03:10.395][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-09-07 16:03:10.395][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-09-07 16:03:10.396][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-09-07 16:03:10.397][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-09-07 16:03:10.398][self$setPropertyValue]
biodb.DEBUG[2024-09-07 16:03:10.398][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-09-07 16:03:10.399][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-09-07 16:03:10.400][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-09-07 16:03:10.400][self$setPropertyValue]
biodb.DEBUG[2024-09-07 16:03:10.401][self$getDbsInfo()$define] Define connector mass.sqlite.
biodb.DEBUG[2024-09-07 16:03:10.403][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-09-07 16:03:10.403][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside an SQLite file.".
biodb.DEBUG[2024-09-07 16:03:10.404][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-09-07 16:03:10.405][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-09-07 16:03:10.405][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-09-07 16:03:10.406][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-09-07 16:03:10.407][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-09-07 16:03:10.408][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-09-07 16:03:10.408][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2024-09-07 16:03:10.409][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-09-07 16:03:10.410][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2024-09-07 16:03:10.410][self$setPropertyValue] Setting property "name" to "Mass spectra SQLite".
biodb.DEBUG[2024-09-07 16:03:10.411][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-09-07 16:03:10.412][self$setPropertyValue]
biodb.DEBUG[2024-09-07 16:03:10.412][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-09-07 16:03:10.413][self$setPropertyValue]
biodb.DEBUG[2024-09-07 16:03:10.414][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-09-07 16:03:10.414][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-09-07 16:03:10.415][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-09-07 16:03:10.416][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-09-07 16:03:10.416][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-09-07 16:03:10.417][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-09-07 16:03:10.418][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-09-07 16:03:10.418][self$setPropertyValue]
biodb.DEBUG[2024-09-07 16:03:10.419][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-09-07 16:03:10.420][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-09-07 16:03:10.420][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-09-07 16:03:10.421][self$setPropertyValue]
biodb.DEBUG[2024-09-07 16:03:10.422][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-09-07 16:03:10.423][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:03:10.423][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:03:10.424][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-09-07 16:03:10.425][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:03:10.425][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:03:10.426][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:03:10.427][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:03:10.427][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-09-07 16:03:10.428][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:03:10.428][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:03:10.429][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:03:10.430][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:03:10.431][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-09-07 16:03:10.431][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:03:10.432][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:03:10.432][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:03:10.433][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:03:10.434][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-09-07 16:03:10.434][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:03:10.435][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:03:10.435][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:03:10.436][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:03:10.437][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-09-07 16:03:10.437][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:03:10.438][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:03:10.439][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:03:10.439][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:03:10.440][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-09-07 16:03:10.440][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:03:10.441][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:03:10.442][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:03:10.443][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:03:10.443][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-09-07 16:03:10.444][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:03:10.445][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:03:10.445][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:03:10.446][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:03:10.446][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-09-07 16:03:10.447][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:03:10.448][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:03:10.448][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:03:10.449][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:03:10.450][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-09-07 16:03:10.450][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:03:10.451][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:03:10.451][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:03:10.452][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:03:10.453][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-09-07 16:03:10.453][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:03:10.454][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:03:10.455][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:03:10.455][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:03:10.456][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-09-07 16:03:10.457][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:03:10.458][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:03:10.458][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:03:10.459][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:03:10.459][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-09-07 16:03:10.460][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:03:10.461][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:03:10.461][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:03:10.462][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:03:10.463][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-09-07 16:03:10.463][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:03:10.464][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:03:10.464][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:03:10.465][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:03:10.466][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-09-07 16:03:10.466][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:03:10.467][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:03:10.468][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:03:10.468][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:03:10.469][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-09-07 16:03:10.469][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:03:10.470][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:03:10.471][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:03:10.471][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:03:10.472][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-09-07 16:03:10.473][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:03:10.474][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:03:10.474][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:03:10.475][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:03:10.476][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-09-07 16:03:10.476][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:03:10.477][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:03:10.477][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:03:10.478][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:03:10.479][self$getEntryFields()$define] Define field accession.
biodb.DEBUG[2024-09-07 16:03:10.480][self$getEntryFields()$define] Define field description.
biodb.DEBUG[2024-09-07 16:03:10.481][self$getEntryFields()$define] Define field name.
biodb.DEBUG[2024-09-07 16:03:10.482][self$getEntryFields()$define] Define field cas.id.
biodb.DEBUG[2024-09-07 16:03:10.483][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2024-09-07 16:03:10.484][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2024-09-07 16:03:10.485][self$getEntryFields()$define] Define field comp.csv.file.id.
biodb.DEBUG[2024-09-07 16:03:10.486][self$getEntryFields()$define] Define field comp.sqlite.id.
biodb.DEBUG[2024-09-07 16:03:10.487][self$getEntryFields()$define] Define field expasy.enzyme.id.
biodb.DEBUG[2024-09-07 16:03:10.488][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2024-09-07 16:03:10.489][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2024-09-07 16:03:10.490][self$getEntryFields()$define] Define field kegg.genes.id.
biodb.DEBUG[2024-09-07 16:03:10.491][self$getEntryFields()$define] Define field mass.csv.file.id.
biodb.DEBUG[2024-09-07 16:03:10.492][self$getEntryFields()$define] Define field mass.sqlite.id.
biodb.DEBUG[2024-09-07 16:03:10.493][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2024-09-07 16:03:10.494][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2024-09-07 16:03:10.495][self$getEntryFields()$define] Define field compound.id.
biodb.DEBUG[2024-09-07 16:03:10.496][self$getEntryFields()$define] Define field average.mass.
biodb.DEBUG[2024-09-07 16:03:10.497][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2024-09-07 16:03:10.498][self$getEntryFields()$define] Define field monoisotopic.mass.
biodb.DEBUG[2024-09-07 16:03:10.499][self$getEntryFields()$define] Define field nominal.mass.
biodb.DEBUG[2024-09-07 16:03:10.500][self$getEntryFields()$define] Define field peak.attr.
biodb.DEBUG[2024-09-07 16:03:10.501][self$getEntryFields()$define] Define field peak.comp.
biodb.DEBUG[2024-09-07 16:03:10.502][self$getEntryFields()$define] Define field peak.error.ppm.
biodb.DEBUG[2024-09-07 16:03:10.503][self$getEntryFields()$define] Define field peak.formula.
biodb.DEBUG[2024-09-07 16:03:10.504][self$getEntryFields()$define] Define field peak.intensity.
biodb.DEBUG[2024-09-07 16:03:10.505][self$getEntryFields()$define] Define field peak.mass.
biodb.DEBUG[2024-09-07 16:03:10.506][self$getEntryFields()$define] Define field peak.mztheo.
biodb.DEBUG[2024-09-07 16:03:10.507][self$getEntryFields()$define] Define field peak.mzexp.
biodb.DEBUG[2024-09-07 16:03:10.508][self$getEntryFields()$define] Define field peak.mz.
biodb.DEBUG[2024-09-07 16:03:10.509][self$getEntryFields()$define] Define field peak.relative.intensity.
biodb.DEBUG[2024-09-07 16:03:10.510][self$getEntryFields()$define] Define field peaks.
biodb.DEBUG[2024-09-07 16:03:10.511][self$getEntryFields()$define] Define field chrom.col.constructor.
biodb.DEBUG[2024-09-07 16:03:10.512][self$getEntryFields()$define] Define field chrom.col.diameter.
biodb.DEBUG[2024-09-07 16:03:10.513][self$getEntryFields()$define] Define field chrom.col.id.
biodb.DEBUG[2024-09-07 16:03:10.514][self$getEntryFields()$define] Define field chrom.col.length.
biodb.DEBUG[2024-09-07 16:03:10.515][self$getEntryFields()$define] Define field chrom.col.method.protocol.
biodb.DEBUG[2024-09-07 16:03:10.516][self$getEntryFields()$define] Define field chrom.col.name.
biodb.DEBUG[2024-09-07 16:03:10.517][self$getEntryFields()$define] Define field chrom.flow.gradient.
biodb.DEBUG[2024-09-07 16:03:10.518][self$getEntryFields()$define] Define field chrom.flow.rate.
biodb.DEBUG[2024-09-07 16:03:10.519][self$getEntryFields()$define] Define field chrom.rt.
biodb.DEBUG[2024-09-07 16:03:10.520][self$getEntryFields()$define] Define field chrom.rt.max.
biodb.DEBUG[2024-09-07 16:03:10.521][self$getEntryFields()$define] Define field chrom.rt.min.
biodb.DEBUG[2024-09-07 16:03:10.522][self$getEntryFields()$define] Define field chrom.rt.unit.
biodb.DEBUG[2024-09-07 16:03:10.523][self$getEntryFields()$define] Define field chrom.solvent.
biodb.DEBUG[2024-09-07 16:03:10.524][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2024-09-07 16:03:10.525][self$getEntryFields()$define] Define field aa.seq.length.
biodb.DEBUG[2024-09-07 16:03:10.526][self$getEntryFields()$define] Define field aa.seq.location.
biodb.DEBUG[2024-09-07 16:03:10.528][self$getEntryFields()$define] Define field nt.seq.
biodb.DEBUG[2024-09-07 16:03:10.529][self$getEntryFields()$define] Define field nt.seq.length.
biodb.DEBUG[2024-09-07 16:03:10.530][self$getEntryFields()$define] Define field ec.
biodb.DEBUG[2024-09-07 16:03:10.530][self$getEntryFields()$define] Define field organism.
biodb.DEBUG[2024-09-07 16:03:10.531][self$getEntryFields()$define] Define field pathway.class.
biodb.DEBUG[2024-09-07 16:03:10.532][self$getEntryFields()$define] Define field catalytic.activity.
biodb.DEBUG[2024-09-07 16:03:10.533][self$getEntryFields()$define] Define field cofactor.
biodb.DEBUG[2024-09-07 16:03:10.535][self$getEntryFields()$define] Define field gene.symbol.
biodb.DEBUG[2024-09-07 16:03:10.536][self$getEntryFields()$define] Define field charge.
biodb.DEBUG[2024-09-07 16:03:10.537][self$getEntryFields()$define] Define field comp.iupac.name.allowed.
biodb.DEBUG[2024-09-07 16:03:10.538][self$getEntryFields()$define] Define field comp.iupac.name.cas.
biodb.DEBUG[2024-09-07 16:03:10.539][self$getEntryFields()$define] Define field comp.iupac.name.pref.
biodb.DEBUG[2024-09-07 16:03:10.540][self$getEntryFields()$define] Define field comp.iupac.name.syst.
biodb.DEBUG[2024-09-07 16:03:10.541][self$getEntryFields()$define] Define field comp.iupac.name.trad.
biodb.DEBUG[2024-09-07 16:03:10.542][self$getEntryFields()$define] Define field comp.super.class.
biodb.DEBUG[2024-09-07 16:03:10.543][self$getEntryFields()$define] Define field equation.
biodb.DEBUG[2024-09-07 16:03:10.544][self$getEntryFields()$define] Define field formula.
biodb.DEBUG[2024-09-07 16:03:10.545][self$getEntryFields()$define] Define field composition.
biodb.DEBUG[2024-09-07 16:03:10.546][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2024-09-07 16:03:10.547][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2024-09-07 16:03:10.548][self$getEntryFields()$define] Define field logp.
biodb.DEBUG[2024-09-07 16:03:10.549][self$getEntryFields()$define] Define field ms.level.
biodb.DEBUG[2024-09-07 16:03:10.550][self$getEntryFields()$define] Define field ms.mode.
biodb.DEBUG[2024-09-07 16:03:10.551][self$getEntryFields()$define] Define field msdev.
biodb.DEBUG[2024-09-07 16:03:10.552][self$getEntryFields()$define] Define field msdevtype.
biodb.DEBUG[2024-09-07 16:03:10.553][self$getEntryFields()$define] Define field msprecannot.
biodb.DEBUG[2024-09-07 16:03:10.554][self$getEntryFields()$define] Define field msprecmz.
biodb.DEBUG[2024-09-07 16:03:10.555][self$getEntryFields()$define] Define field mstype.
biodb.DEBUG[2024-09-07 16:03:10.556][self$getEntryFields()$define] Define field nb.compounds.
biodb.DEBUG[2024-09-07 16:03:10.557][self$getEntryFields()$define] Define field nb.peaks.
biodb.DEBUG[2024-09-07 16:03:10.558][self$getEntryFields()$define] Define field products.
biodb.DEBUG[2024-09-07 16:03:10.559][self$getEntryFields()$define] Define field smiles.
biodb.DEBUG[2024-09-07 16:03:10.560][self$getEntryFields()$define] Define field smiles.canonical.
biodb.DEBUG[2024-09-07 16:03:10.561][self$getEntryFields()$define] Define field smiles.isomeric.
biodb.DEBUG[2024-09-07 16:03:10.562][self$getEntryFields()$define] Define field substrates.
biodb.DEBUG[2024-09-07 16:03:10.563][initialize] Created successfully new BiodbMain instance.
biodb.DEBUG[2024-09-07 16:03:10.565][initialize] This is biodb version 1.13.0.
biodb.DEBUG[2024-09-07 16:03:10.565][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-09-07 16:03:10.566][FUN] Trying to call function notifyNewObservers on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:03:10.567][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:03:10.567][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:03:10.568][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:03:10.569][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-09-07 16:03:10.569][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:03:10.570][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:03:10.571][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:03:10.571][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:03:10.572][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:03:10.573][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:03:10.573][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-09-07 16:03:10.574][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:03:10.575][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:03:10.576][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:03:10.576][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:03:10.577][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:03:10.578][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:03:10.578][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-09-07 16:03:10.579][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:03:10.579][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:03:10.580][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:03:10.581][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:03:10.581][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:03:10.582][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:03:10.583][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-09-07 16:03:10.583][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:03:10.584][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:03:10.585][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:03:10.585][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:03:10.586][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:03:10.587][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:03:10.587][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-09-07 16:03:10.588][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:03:10.589][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:03:10.589][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:03:10.590][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:03:10.591][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:03:10.591][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:03:10.592][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-09-07 16:03:10.593][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:03:10.593][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:03:10.594][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:03:10.595][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:03:10.595][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:03:10.596][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:03:10.597][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-09-07 16:03:10.597][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:03:10.598][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:03:10.598][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:03:10.599][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:03:10.600][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:03:10.600][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:03:10.601][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-09-07 16:03:10.602][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:03:10.602][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:03:10.603][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:03:10.604][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:03:10.604][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:03:10.605][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:03:10.606][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-09-07 16:03:10.606][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:03:10.607][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:03:10.608][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:03:10.609][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:03:10.609][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:03:10.610][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:03:10.611][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-09-07 16:03:10.611][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:03:10.612][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:03:10.613][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:03:10.613][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:03:10.614][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:03:10.615][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:03:10.615][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-09-07 16:03:10.616][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:03:10.617][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:03:10.617][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:03:10.618][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:03:10.619][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:03:10.619][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:03:10.620][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-09-07 16:03:10.621][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:03:10.621][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:03:10.622][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:03:10.623][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:03:10.628][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:03:10.628][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:03:10.629][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-09-07 16:03:10.630][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:03:10.630][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:03:10.631][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:03:10.632][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:03:10.632][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:03:10.633][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:03:10.633][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-09-07 16:03:10.634][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:03:10.635][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:03:10.635][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:03:10.636][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:03:10.637][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:03:10.637][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:03:10.638][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-09-07 16:03:10.639][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:03:10.639][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:03:10.640][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:03:10.640][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:03:10.641][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:03:10.642][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:03:10.642][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-09-07 16:03:10.643][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:03:10.643][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:03:10.644][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:03:10.645][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:03:10.645][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:03:10.646][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:03:10.647][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-09-07 16:03:10.647][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:03:10.648][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:03:10.648][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:03:10.649][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:03:10.650][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:03:10.650][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:03:10.652][biodb$loadDefinitions] Load definitions from file "/Users/biocbuild/bbs-3.20-bioc-longtests/meat/biodbNcbi.Rcheck/biodbNcbi/definitions.yml".
biodb.DEBUG[2024-09-07 16:03:10.654][self$getDbsInfo()$define] Define connector ncbi.ccds.
biodb.DEBUG[2024-09-07 16:03:10.655][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-09-07 16:03:10.656][self$setPropertyValue] Setting property "description" to "NCBI CCDS database.".
biodb.DEBUG[2024-09-07 16:03:10.656][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-09-07 16:03:10.657][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-09-07 16:03:10.658][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-09-07 16:03:10.658][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-09-07 16:03:10.659][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2024-09-07 16:03:10.660][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-09-07 16:03:10.661][self$setPropertyValue] Setting property "entry.content.type" to "html".
biodb.DEBUG[2024-09-07 16:03:10.662][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-09-07 16:03:10.662][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-09-07 16:03:10.663][self$setPropertyValue] Setting property "name" to "NCBI CCDS".
biodb.DEBUG[2024-09-07 16:03:10.664][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-09-07 16:03:10.664][self$setPropertyValue] Setting property "parsing.expr" to "list(attr = "value", path = "//input[@id='DATA']")".
biodb.DEBUG[2024-09-07 16:03:10.664][self$setPropertyValue] Setting property "parsing.expr" to "//b[starts-with(.,'Nucleotide Sequence')]/../tt".
biodb.DEBUG[2024-09-07 16:03:10.665][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2024-09-07 16:03:10.666][self$setPropertyValue]
biodb.DEBUG[2024-09-07 16:03:10.667][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2024-09-07 16:03:10.668][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-09-07 16:03:10.668][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-09-07 16:03:10.669][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-09-07 16:03:10.670][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-09-07 16:03:10.670][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-09-07 16:03:10.671][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-09-07 16:03:10.672][self$setPropertyValue] Setting property "urls" to "https://www.ncbi.nlm.nih.gov/CCDS/".
biodb.DEBUG[2024-09-07 16:03:10.672][self$setPropertyValue] Setting property "urls" to "https://eutils.ncbi.nlm.nih.gov/entrez/eutils".
biodb.DEBUG[2024-09-07 16:03:10.672][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-09-07 16:03:10.673][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-09-07 16:03:10.674][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2024-09-07 16:03:10.675][self$setPropertyValue]
biodb.DEBUG[2024-09-07 16:03:10.675][self$getDbsInfo()$define] Define connector ncbi.gene.
biodb.DEBUG[2024-09-07 16:03:10.677][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-09-07 16:03:10.678][self$setPropertyValue] Setting property "description" to "NCBI Gene database.".
biodb.DEBUG[2024-09-07 16:03:10.678][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-09-07 16:03:10.679][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-09-07 16:03:10.680][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-09-07 16:03:10.680][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-09-07 16:03:10.681][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2024-09-07 16:03:10.682][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-09-07 16:03:10.683][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2024-09-07 16:03:10.683][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-09-07 16:03:10.684][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-09-07 16:03:10.685][self$setPropertyValue] Setting property "name" to "NCBI Gene".
biodb.DEBUG[2024-09-07 16:03:10.686][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-09-07 16:03:10.686][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-track_geneid".
biodb.DEBUG[2024-09-07 16:03:10.686][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-ref_desc".
biodb.DEBUG[2024-09-07 16:03:10.686][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-ref_maploc".
biodb.DEBUG[2024-09-07 16:03:10.686][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-ref_locus".
biodb.DEBUG[2024-09-07 16:03:10.686][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-ref_syn_E".
biodb.DEBUG[2024-09-07 16:03:10.686][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-commentary_heading[text()='UniProtKB']/..//Dbtag_db[text()='UniProtKB/Swiss-Prot']/..//Object-id_str".
biodb.DEBUG[2024-09-07 16:03:10.687][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2024-09-07 16:03:10.688][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-09-07 16:03:10.688][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2024-09-07 16:03:10.689][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-09-07 16:03:10.690][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-09-07 16:03:10.690][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-09-07 16:03:10.691][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-09-07 16:03:10.692][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-09-07 16:03:10.692][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-09-07 16:03:10.693][self$setPropertyValue] Setting property "urls" to "https://www.ncbi.nlm.nih.gov/".
biodb.DEBUG[2024-09-07 16:03:10.693][self$setPropertyValue] Setting property "urls" to "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/".
biodb.DEBUG[2024-09-07 16:03:10.694][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-09-07 16:03:10.694][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-09-07 16:03:10.695][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2024-09-07 16:03:10.696][self$setPropertyValue]
biodb.DEBUG[2024-09-07 16:03:10.697][self$getDbsInfo()$define] Define connector ncbi.pubchem.comp.
biodb.DEBUG[2024-09-07 16:03:10.698][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-09-07 16:03:10.699][self$setPropertyValue] Setting property "description" to "PubChem Compound database.".
biodb.DEBUG[2024-09-07 16:03:10.700][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-09-07 16:03:10.700][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-09-07 16:03:10.701][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-09-07 16:03:10.702][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-09-07 16:03:10.702][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2024-09-07 16:03:10.703][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-09-07 16:03:10.704][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2024-09-07 16:03:10.705][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-09-07 16:03:10.705][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-09-07 16:03:10.706][self$setPropertyValue] Setting property "name" to "PubChem Compound".
biodb.DEBUG[2024-09-07 16:03:10.707][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-09-07 16:03:10.707][self$setPropertyValue] Setting property "parsing.expr" to "//PC-CompoundType_id_cid".
biodb.DEBUG[2024-09-07 16:03:10.707][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='IUPAC Name']/../PC-Urn_name[text()='Allowed']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-09-07 16:03:10.707][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='IUPAC Name']/../PC-Urn_name[text()='CAS-like Style']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-09-07 16:03:10.707][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='IUPAC Name']/../PC-Urn_name[text()='Preferred']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-09-07 16:03:10.707][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='IUPAC Name']/../PC-Urn_name[text()='Systematic']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-09-07 16:03:10.707][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='IUPAC Name']/../PC-Urn_name[text()='Traditional']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-09-07 16:03:10.707][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='Mass']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-09-07 16:03:10.707][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='Molecular Formula']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-09-07 16:03:10.707][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='InChI']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-09-07 16:03:10.707][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='InChIKey']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-09-07 16:03:10.707][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='Log P']/../../..//PC-InfoData_value_fval".
biodb.DEBUG[2024-09-07 16:03:10.707][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='Molecular Weight']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-09-07 16:03:10.707][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='SMILES']/../PC-Urn_name[text()='Canonical']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-09-07 16:03:10.707][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='SMILES']/../PC-Urn_name[text()='Isomeric']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-09-07 16:03:10.708][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2024-09-07 16:03:10.709][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-09-07 16:03:10.709][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2024-09-07 16:03:10.709][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2024-09-07 16:03:10.710][self$setPropertyValue] Setting property "scheduler.n" to "5".
biodb.DEBUG[2024-09-07 16:03:10.710][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-09-07 16:03:10.711][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-09-07 16:03:10.712][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-09-07 16:03:10.712][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-09-07 16:03:10.713][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-09-07 16:03:10.714][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-09-07 16:03:10.714][self$setPropertyValue] Setting property "urls" to "https://pubchem.ncbi.nlm.nih.gov/".
biodb.DEBUG[2024-09-07 16:03:10.714][self$setPropertyValue] Setting property "urls" to "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/".
biodb.DEBUG[2024-09-07 16:03:10.714][self$setPropertyValue] Setting property "urls" to "https://pubchem.ncbi.nlm.nih.gov/rest/pug/".
biodb.DEBUG[2024-09-07 16:03:10.715][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-09-07 16:03:10.716][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-09-07 16:03:10.716][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2024-09-07 16:03:10.717][self$setPropertyValue] Setting property "xml.ns" to "http://www.ncbi.nlm.nih.gov".
biodb.DEBUG[2024-09-07 16:03:10.718][self$getDbsInfo()$define] Define connector ncbi.pubchem.subst.
biodb.DEBUG[2024-09-07 16:03:10.719][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-09-07 16:03:10.720][self$setPropertyValue] Setting property "description" to "PubChem Substance database.".
biodb.DEBUG[2024-09-07 16:03:10.721][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-09-07 16:03:10.721][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-09-07 16:03:10.722][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-09-07 16:03:10.723][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-09-07 16:03:10.724][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2024-09-07 16:03:10.724][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-09-07 16:03:10.725][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2024-09-07 16:03:10.726][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-09-07 16:03:10.726][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-09-07 16:03:10.727][self$setPropertyValue] Setting property "name" to "PubChem Substance".
biodb.DEBUG[2024-09-07 16:03:10.728][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-09-07 16:03:10.728][self$setPropertyValue] Setting property "parsing.expr" to "//PC-ID_id".
biodb.DEBUG[2024-09-07 16:03:10.728][self$setPropertyValue] Setting property "parsing.expr" to "//PC-CompoundType_id_cid".
biodb.DEBUG[2024-09-07 16:03:10.729][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2024-09-07 16:03:10.730][self$setPropertyValue]
biodb.DEBUG[2024-09-07 16:03:10.731][self$setPropertyValue] Setting property "scheduler.n" to "5".
biodb.DEBUG[2024-09-07 16:03:10.731][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-09-07 16:03:10.732][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-09-07 16:03:10.733][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-09-07 16:03:10.733][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-09-07 16:03:10.734][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-09-07 16:03:10.735][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-09-07 16:03:10.735][self$setPropertyValue] Setting property "urls" to "https://pubchem.ncbi.nlm.nih.gov/".
biodb.DEBUG[2024-09-07 16:03:10.735][self$setPropertyValue] Setting property "urls" to "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/".
biodb.DEBUG[2024-09-07 16:03:10.735][self$setPropertyValue] Setting property "urls" to "https://pubchem.ncbi.nlm.nih.gov/rest/pug/".
biodb.DEBUG[2024-09-07 16:03:10.736][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-09-07 16:03:10.737][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-09-07 16:03:10.738][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2024-09-07 16:03:10.738][self$setPropertyValue] Setting property "xml.ns" to "http://www.ncbi.nlm.nih.gov".
biodb.DEBUG[2024-09-07 16:03:10.739][self$getEntryFields()$define] Define field ncbi.ccds.id.
biodb.DEBUG[2024-09-07 16:03:10.740][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2024-09-07 16:03:10.741][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2024-09-07 16:03:10.743][self$getEntryFields()$define] Define field ncbi.pubchem.subst.id.
biodb.DEBUG[2024-09-07 16:03:10.744][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2024-09-07 16:03:10.745][self$getEntryFields()$define] Define field uniprot.id.
biodb.DEBUG[2024-09-07 16:03:10.750][super$initialize] Initialize connector ncbi.pubchem.comp.
biodb.DEBUG[2024-09-07 16:03:10.751][super$initialize] Register connector ncbi.pubchem.comp with the request scheduler
biodb.DEBUG[2024-09-07 16:03:10.752][private$bdb$getRequestScheduler()$re ...] Register connector ncbi.pubchem.comp.
biodb.DEBUG[2024-09-07 16:03:10.753][private$addConnectorRules] Create new rule for URL "pubchem.ncbi.nlm.nih.gov" of connector "ncbi.pubchem.comp".
biodb.DEBUG[2024-09-07 16:03:10.754][self$setFrequency] t=1.000000, n=5.000000
biodb.DEBUG[2024-09-07 16:03:10.755][self$setFrequency] t=1.000000, n=5.000000
biodb.DEBUG[2024-09-07 16:03:10.756][private$addConnectorRules] Create new rule for URL "eutils.ncbi.nlm.nih.gov" of connector "ncbi.pubchem.comp".
biodb.DEBUG[2024-09-07 16:03:10.757][self$setFrequency] t=1.000000, n=5.000000
biodb.DEBUG[2024-09-07 16:03:10.757][self$setFrequency] t=1.000000, n=5.000000
biodb.DEBUG[2024-09-07 16:03:10.758][rule$addConnector] Connector "ncbi.pubchem.comp" is already listed in rule "pubchem.ncbi.nlm.nih.gov".
biodb.DEBUG[2024-09-07 16:03:10.762][biodb$getFactory()$createConn] Creating new connector ncbi.pubchem.comp for database class ncbi.pubchem.comp .
biodb.INFO [2024-09-07 16:03:10.765][biodb::testThat]
biodb.INFO [2024-09-07 16:03:10.766][biodb::testThat] Running test function  test.entry.fields  (" Entry fields have a correct value ").
biodb.INFO [2024-09-07 16:03:10.767][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-09-07 16:03:10.768][biodb::testThat]
biodb.TRACE[2024-09-07 16:03:10.770][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/bbs-3.20-bioc-longtests/meat/biodbNcbi.Rcheck/biodbNcbi/testref/entry-ncbi.pubchem.comp-2-content.xml".
biodb.DEBUG[2024-09-07 16:03:10.770][biodb$getFactory()$createEntryFromCo ...] Creating PubChem Compound entries from 1 content(s).
biodb.DEBUG[2024-09-07 16:03:10.773][biodb$getFactory()$createEntryFromCo ...] Parsing 1 PubChem Compound entries.
biodb.DEBUG[2024-09-07 16:03:10.774][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:03:10.775][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:03:10.775][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:03:10.779][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:03:10.780][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:03:10.781][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:03:10.781][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:03:10.785][ef$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:10.786][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:10.786][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:10.787][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:10.788][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:10.789][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:10.789][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:10.790][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:10.791][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:10.792][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:10.792][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:10.793][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:10.794][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:10.795][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:10.796][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:10.796][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:10.797][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:10.798][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:10.799][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:10.799][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:10.801][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:10.801][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:10.802][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:10.803][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:10.803][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:10.804][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:10.805][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:10.806][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:10.807][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:10.807][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:10.808][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:10.809][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:10.810][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:10.811][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:10.811][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:10.812][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:10.813][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:10.814][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:10.814][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:10.815][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:10.816][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:10.817][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:10.817][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:10.818][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:10.819][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:10.820][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:10.820][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:10.821][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:10.822][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2024-09-07 16:03:10.822][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:10.823][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:10.824][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:10.825][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-09-07 16:03:10.825][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:10.826][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:10.827][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:10.827][ef$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:03:10.828][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:03:10.829][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:10.830][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:10.830][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:03:10.831][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:03:10.832][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:10.833][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:10.833][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:03:10.834][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:03:10.835][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:10.835][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:10.836][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:03:10.837][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:03:10.838][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:10.838][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:10.839][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:03:10.840][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:03:10.841][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:10.841][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:10.842][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:03:10.843][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:03:10.844][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:10.844][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:10.845][ef$get] Asked field names are: logp.
biodb.TRACE[2024-09-07 16:03:10.846][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-09-07 16:03:10.847][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:10.847][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:10.848][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-09-07 16:03:10.849][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-09-07 16:03:10.850][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:10.850][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:10.851][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-09-07 16:03:10.852][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:10.853][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:10.853][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:10.854][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-09-07 16:03:10.855][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:10.856][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:10.856][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:10.857][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:10.858][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:10.859][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:10.859][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:10.860][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:10.861][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:10.862][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:10.862][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:10.863][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:10.864][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:10.865][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:10.865][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:10.866][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:10.867][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:10.868][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:10.868][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:10.869][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2024-09-07 16:03:10.870][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:10.871][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:10.872][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:10.872][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:10.873][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:10.874][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:10.874][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:10.875][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:10.876][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:10.877][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:10.877][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:10.878][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2024-09-07 16:03:10.879][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:10.879][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:10.880][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:10.881][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:10.882][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:10.883][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:10.883][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:10.884][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:10.885][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:10.886][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:10.886][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:10.887][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2024-09-07 16:03:10.893][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:10.894][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:10.894][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:10.895][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:10.896][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:10.896][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:10.897][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:10.898][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:10.898][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:10.899][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:10.900][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:10.900][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2024-09-07 16:03:10.901][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:10.902][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:10.903][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:10.903][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:10.904][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:10.905][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:10.905][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:10.906][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:10.907][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:10.907][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:10.908][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:10.909][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2024-09-07 16:03:10.909][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:10.910][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:10.911][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:10.912][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:10.912][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:10.913][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:10.914][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:10.915][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:10.915][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:10.916][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:10.917][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:10.917][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:03:10.918][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:03:10.919][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:10.919][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:10.920][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:10.921][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:10.922][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:10.922][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:10.923][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:10.924][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:10.924][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:10.925][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:10.926][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:10.926][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:10.927][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:10.928][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:10.929][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:10.929][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:10.930][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:10.931][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:10.931][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:10.932][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:10.933][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:10.933][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:10.934][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:10.935][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:10.936][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:10.936][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:10.937][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:10.938][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:10.939][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:10.939][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:10.940][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:10.941][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:10.942][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:10.942][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:10.943][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:10.944][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:10.944][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:10.945][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:10.946][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:10.947][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:10.947][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:10.948][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:03:10.949][biodb$getFactory()$createEntryFromCo ...] Accession numbers: 2.
biodb.TRACE[2024-09-07 16:03:10.950][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-09-07 16:03:10.951][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-09-07 16:03:10.952][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:10.952][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:10.953][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-09-07 16:03:10.954][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-09-07 16:03:10.954][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:10.955][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:10.956][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-09-07 16:03:10.956][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-09-07 16:03:10.957][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:10.958][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:10.959][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-09-07 16:03:10.959][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-09-07 16:03:10.960][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:10.961][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:10.961][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-09-07 16:03:10.962][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-09-07 16:03:10.963][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:10.963][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:10.964][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-09-07 16:03:10.965][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-09-07 16:03:10.966][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:10.966][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:10.967][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-09-07 16:03:10.968][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-09-07 16:03:10.968][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:10.969][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:10.971][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:10.972][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:10.972][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:10.973][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:10.977][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:10.978][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:10.979][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:10.980][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:10.984][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:10.984][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:10.985][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:10.986][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:10.986][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:10.987][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:10.988][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:10.988][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:10.989][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:10.990][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:10.991][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:10.991][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:10.993][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:10.994][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:10.995][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:10.996][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:10.996][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:10.997][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:10.998][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:10.998][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:10.999][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:11.000][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:11.001][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:11.001][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:11.002][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:11.003][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:11.004][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:11.004][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:11.005][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:11.006][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:11.007][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:11.007][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:11.008][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:11.009][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:11.009][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:11.010][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:11.016][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:11.017][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:11.017][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:11.018][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:11.019][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:11.019][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:11.020][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:11.021][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:11.022][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:11.022][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:11.023][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:11.024][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:11.024][ef$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:11.025][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:11.026][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:11.027][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:11.028][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:11.028][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:11.029][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:11.030][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:11.036][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-09-07 16:03:11.037][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:11.038][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:11.039][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:11.039][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:11.040][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:11.041][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:11.041][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:11.042][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:11.043][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:11.044][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:11.044][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:11.045][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2024-09-07 16:03:11.046][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:11.046][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:11.047][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:11.048][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-09-07 16:03:11.049][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:11.049][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:11.050][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:11.057][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-09-07 16:03:11.057][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:11.058][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:11.059][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:11.059][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:11.060][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:11.061][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:11.061][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:11.062][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:11.063][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:11.064][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:11.064][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:11.065][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-09-07 16:03:11.066][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:11.067][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:11.067][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:11.068][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-09-07 16:03:11.069][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:11.069][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:11.070][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:11.077][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:03:11.077][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:03:11.078][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:11.079][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:11.079][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:03:11.080][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:03:11.081][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:11.081][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:11.082][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:03:11.083][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:03:11.084][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:11.084][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:11.085][ef$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:03:11.086][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:03:11.086][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:11.087][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:11.088][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:03:11.088][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:03:11.089][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:11.090][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:11.097][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-09-07 16:03:11.097][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-09-07 16:03:11.098][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:11.099][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:11.099][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-09-07 16:03:11.100][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-09-07 16:03:11.101][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:11.101][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:11.102][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-09-07 16:03:11.103][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-09-07 16:03:11.104][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:11.104][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:11.105][ef$get] Asked field names are: logp.
biodb.TRACE[2024-09-07 16:03:11.106][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-09-07 16:03:11.106][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:11.107][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:11.108][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-09-07 16:03:11.108][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-09-07 16:03:11.109][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:11.110][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:11.116][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:11.117][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:11.118][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:11.118][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:11.119][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:11.120][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:11.120][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:11.121][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:11.122][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:11.123][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:11.123][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:11.124][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:11.125][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:11.126][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:11.126][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:11.127][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:11.128][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:11.128][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:11.129][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:11.130][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:11.136][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:11.137][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:11.138][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:11.139][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:11.139][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:11.140][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:11.141][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:11.142][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:11.143][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:11.143][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:11.144][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:11.145][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:11.146][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:11.146][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:11.147][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:11.152][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:11.153][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:11.154][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:11.154][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:11.155][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:11.162][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:11.162][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:11.163][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:11.164][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:11.164][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:11.165][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:11.166][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:11.166][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:11.167][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:11.168][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:11.168][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:11.169][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:11.170][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:11.171][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:11.171][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:11.172][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:11.173][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:11.173][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:11.174][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:11.175][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:11.181][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:11.182][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:11.183][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:11.183][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:11.184][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:11.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:11.185][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:11.186][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:11.187][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:11.187][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:11.188][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:11.189][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:11.190][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:11.190][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:11.191][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:11.192][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:11.192][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:11.193][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:11.194][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:11.194][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:11.201][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:11.202][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:11.202][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:11.203][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:11.204][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:11.204][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:11.205][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:11.206][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:11.206][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:11.207][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:11.208][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:11.208][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:11.209][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:11.210][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:11.211][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:11.211][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:11.212][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:11.213][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:11.213][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:11.214][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:11.220][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:11.221][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:11.222][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:11.223][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:11.223][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:11.224][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:11.225][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:11.225][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:11.226][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:11.227][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:11.228][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:11.228][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:11.229][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:11.230][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:11.230][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:11.231][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:11.232][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:11.233][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:11.233][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:11.234][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:11.241][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:11.241][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:11.242][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:11.243][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:11.243][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:11.244][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:11.245][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:11.246][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:11.246][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:11.247][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:11.248][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:11.249][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:11.249][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:11.250][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:11.251][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:11.251][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:11.252][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:11.253][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:11.254][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:11.254][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:11.261][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:03:11.262][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:03:11.262][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:11.263][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:11.264][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:03:11.264][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:03:11.265][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:11.266][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:11.267][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:03:11.267][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:03:11.268][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:11.269][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:11.269][ef$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:03:11.270][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:03:11.271][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:11.272][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:11.272][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:03:11.273][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:03:11.274][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:11.274][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:11.281][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:03:11.282][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:03:11.283][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:11.283][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:11.284][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:03:11.285][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:03:11.286][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:11.286][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:11.287][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:03:11.288][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:03:11.289][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:11.289][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:11.290][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:03:11.291][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:03:11.291][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:11.292][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:11.293][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:03:11.294][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:03:11.294][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:11.295][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:11.302][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:03:11.302][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:03:11.303][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:11.304][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:11.304][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:03:11.305][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:03:11.306][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:11.307][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:11.307][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:03:11.308][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:03:11.309][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:11.309][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:11.310][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:03:11.311][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:03:11.312][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:11.312][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:11.313][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:03:11.314][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:03:11.314][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:11.315][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:11.322][ef$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:11.323][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:11.323][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:11.324][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:11.328][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:11.329][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:11.329][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:11.330][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:11.334][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:11.335][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:11.335][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:11.336][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:11.340][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:11.340][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:11.341][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:11.342][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:11.345][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:11.346][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:11.347][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:11.348][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:11.351][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:11.352][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:11.353][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:11.353][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:11.357][ef$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:03:11.358][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:03:11.359][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:11.359][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:11.363][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:03:11.364][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:03:11.365][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:11.365][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:11.369][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:03:11.370][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:03:11.370][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:11.371][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:11.375][ef$get] Asked field names are: logp.
biodb.TRACE[2024-09-07 16:03:11.376][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-09-07 16:03:11.376][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:11.377][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:11.380][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:11.381][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:11.382][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:11.383][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:11.386][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:11.387][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:11.388][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:11.389][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:11.393][ef$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:03:11.393][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:03:11.394][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:11.395][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:11.398][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:11.399][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:11.400][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:11.401][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:11.404][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:11.405][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:11.406][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:11.407][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:11.411][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/bbs-3.20-bioc-longtests/meat/biodbNcbi.Rcheck/biodbNcbi/testref/entry-ncbi.pubchem.comp-65124-content.xml".
biodb.DEBUG[2024-09-07 16:03:11.412][biodb$getFactory()$createEntryFromCo ...] Creating PubChem Compound entries from 1 content(s).
biodb.DEBUG[2024-09-07 16:03:11.413][biodb$getFactory()$createEntryFromCo ...] Parsing 1 PubChem Compound entries.
biodb.DEBUG[2024-09-07 16:03:11.414][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:03:11.415][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:03:11.415][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:03:11.424][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:03:11.425][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:03:11.426][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:03:11.426][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:03:11.429][ef$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:11.430][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:11.431][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:11.432][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:11.432][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:11.433][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:11.434][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:11.434][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:11.435][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:11.436][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:11.437][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:11.438][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:11.438][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:11.439][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:11.440][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:11.441][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:11.441][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:11.442][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:11.443][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:11.443][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:11.444][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:11.445][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:11.446][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:11.446][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:11.447][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:11.448][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:11.448][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:11.449][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:11.450][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:11.451][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:11.451][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:11.452][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:11.453][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:11.453][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:11.454][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:11.455][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:11.456][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:11.456][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:11.457][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:11.458][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:11.459][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:11.459][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:11.460][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:11.461][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:11.462][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:11.462][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:11.463][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:11.464][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:11.464][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2024-09-07 16:03:11.465][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:11.466][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:11.466][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:11.467][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-09-07 16:03:11.468][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:11.469][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:11.470][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:11.470][ef$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:03:11.471][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:03:11.472][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:11.472][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:11.473][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:03:11.474][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:03:11.475][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:11.476][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:11.476][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:03:11.477][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:03:11.478][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:11.478][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:11.479][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:03:11.480][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:03:11.481][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:11.482][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:11.482][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:03:11.483][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:03:11.484][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:11.484][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:11.485][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:03:11.486][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:03:11.487][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:11.487][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:11.488][ef$get] Asked field names are: logp.
biodb.TRACE[2024-09-07 16:03:11.489][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-09-07 16:03:11.489][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:11.490][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:11.491][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-09-07 16:03:11.492][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-09-07 16:03:11.492][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:11.493][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:11.494][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-09-07 16:03:11.495][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:11.495][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:11.496][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:11.497][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-09-07 16:03:11.498][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:11.498][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:11.499][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:11.500][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:11.500][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:11.501][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:11.502][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:11.503][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:11.503][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:11.504][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:11.505][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:11.506][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:11.506][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:11.507][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:11.508][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:11.509][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:11.509][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:11.510][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:11.511][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:11.511][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2024-09-07 16:03:11.512][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:11.513][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:11.513][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:11.514][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:11.515][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:11.515][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:11.516][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:11.517][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:11.518][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:11.519][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:11.519][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:11.520][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2024-09-07 16:03:11.521][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:11.521][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:11.522][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:11.523][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:11.524][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:11.524][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:11.525][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:11.526][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:11.527][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:11.527][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:11.528][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:11.529][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2024-09-07 16:03:11.529][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:11.530][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:11.531][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:11.531][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:11.532][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:11.533][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:11.534][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:11.534][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:11.535][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:11.536][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:11.536][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:11.537][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2024-09-07 16:03:11.538][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:11.539][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:11.539][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:11.540][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:11.541][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:11.542][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:11.542][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:11.543][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:11.544][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:11.544][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:11.545][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:11.546][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2024-09-07 16:03:11.547][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:11.547][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:11.548][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:11.549][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:11.549][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:11.550][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:11.551][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:11.552][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:11.552][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:11.553][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:11.554][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:11.554][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:03:11.555][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:03:11.556][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:11.557][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:11.557][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:11.558][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:11.559][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:11.559][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:11.560][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:11.561][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:11.562][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:11.562][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:11.563][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:11.564][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:11.564][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:11.565][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:11.566][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:11.567][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:11.567][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:11.568][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:11.569][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:11.569][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:11.570][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:11.571][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:11.572][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:11.572][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:11.573][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:11.574][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:11.574][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:11.575][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:11.576][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:11.576][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:11.577][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:11.578][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:11.579][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:11.579][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:11.580][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:11.581][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:11.582][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:11.582][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:11.583][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:11.584][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:11.584][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:11.585][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:03:11.586][biodb$getFactory()$createEntryFromCo ...] Accession numbers: 65124.
biodb.TRACE[2024-09-07 16:03:11.587][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-09-07 16:03:11.588][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-09-07 16:03:11.589][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:11.590][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:11.590][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-09-07 16:03:11.591][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-09-07 16:03:11.592][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:11.592][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:11.593][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-09-07 16:03:11.594][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-09-07 16:03:11.595][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:11.595][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:11.596][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-09-07 16:03:11.597][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-09-07 16:03:11.597][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:11.598][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:11.599][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-09-07 16:03:11.600][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-09-07 16:03:11.600][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:11.601][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:11.602][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-09-07 16:03:11.602][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-09-07 16:03:11.603][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:11.604][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:11.604][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-09-07 16:03:11.605][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-09-07 16:03:11.606][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:11.607][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:11.608][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:11.609][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:11.610][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:11.610][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:11.615][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:11.615][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:11.616][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:11.617][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:11.621][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:11.622][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:11.622][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:11.623][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:11.624][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:11.625][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:11.625][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:11.626][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:11.627][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:11.627][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:11.628][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:11.629][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:11.631][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:11.632][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:11.632][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:11.633][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:11.634][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:11.634][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:11.635][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:11.636][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:11.636][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:11.637][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:11.638][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:11.638][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:11.639][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:11.640][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:11.641][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:11.641][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:11.642][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:11.643][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:11.643][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:11.644][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:11.645][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:11.646][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:11.646][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:11.647][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:11.653][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:11.654][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:11.654][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:11.655][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:11.656][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:11.656][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:11.657][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:11.658][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:11.658][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:11.659][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:11.660][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:11.660][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:11.661][ef$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:11.662][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:11.663][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:11.663][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:11.664][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:11.665][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:11.665][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:11.666][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:11.673][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:11.674][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:11.674][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:11.680][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:11.680][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:11.681][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:11.682][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:11.682][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:11.683][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:11.684][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:11.685][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:11.685][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:11.686][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:11.687][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:11.687][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:11.688][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:11.689][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:11.689][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:11.690][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:11.691][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:11.697][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:11.698][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:11.699][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:11.700][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:11.700][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:11.701][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:11.702][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:11.702][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:11.703][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:11.704][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:11.705][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:11.705][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:11.706][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:11.707][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:11.707][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:11.708][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:11.709][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:11.710][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:11.710][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:11.711][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:11.718][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:03:11.719][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:03:11.719][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:11.720][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:11.721][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:03:11.721][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:03:11.722][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:11.723][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:11.723][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:03:11.724][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:03:11.725][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:11.726][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:11.726][ef$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:03:11.727][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:03:11.728][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:11.729][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:11.729][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:03:11.730][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:03:11.731][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:11.731][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:11.738][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-09-07 16:03:11.739][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-09-07 16:03:11.739][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:11.740][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:11.741][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-09-07 16:03:11.741][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-09-07 16:03:11.742][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:11.743][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:11.743][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-09-07 16:03:11.744][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-09-07 16:03:11.745][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:11.745][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:11.746][ef$get] Asked field names are: logp.
biodb.TRACE[2024-09-07 16:03:11.747][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-09-07 16:03:11.748][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:11.748][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:11.749][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-09-07 16:03:11.750][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-09-07 16:03:11.750][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:11.751][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:11.758][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:11.758][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:11.759][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:11.760][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:11.760][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:11.761][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:11.762][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:11.762][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:11.763][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:11.764][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:11.765][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:11.765][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:11.766][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:11.767][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:11.768][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:11.768][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:11.769][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:11.770][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:11.770][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:11.771][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:11.778][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:11.778][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:11.779][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:11.780][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:11.780][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:11.781][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:11.782][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:11.783][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:11.783][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:11.784][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:11.785][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:11.785][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:11.786][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:11.787][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:11.788][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:11.788][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:11.789][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:11.790][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:11.790][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:11.791][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:11.798][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:03:11.798][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:03:11.799][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:11.800][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:11.801][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:03:11.801][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:03:11.802][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:11.803][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:11.803][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:03:11.804][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:03:11.805][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:11.806][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:11.806][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:03:11.807][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:03:11.808][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:11.809][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:11.809][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:03:11.810][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:03:11.811][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:11.811][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:11.818][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:03:11.819][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:03:11.820][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:11.821][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:11.821][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:03:11.822][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:03:11.823][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:11.823][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:11.824][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:03:11.825][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:03:11.826][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:11.826][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:11.827][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:03:11.828][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:03:11.828][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:11.829][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:11.830][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:03:11.831][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:03:11.831][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:11.832][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:11.839][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:11.840][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:11.840][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:11.841][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:11.842][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:11.842][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:11.843][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:11.844][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:11.844][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:11.845][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:11.846][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:11.847][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:11.847][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:11.848][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:11.849][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:11.849][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:11.850][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:11.851][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:11.852][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:11.852][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:11.859][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:11.860][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:11.861][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:11.861][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:11.862][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:11.863][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:11.863][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:11.864][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:11.865][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:11.866][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:11.866][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:11.867][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:11.868][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:11.869][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:11.869][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:11.870][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:11.871][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:11.871][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:11.872][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:11.873][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:11.880][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:11.881][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:11.882][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:11.883][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:11.883][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:11.884][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:11.885][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:11.886][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:11.886][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:11.887][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:11.888][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:11.889][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:11.889][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:11.890][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:11.891][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:11.891][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:11.892][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:11.893][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:11.894][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:11.894][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:11.901][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:11.902][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:11.903][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:11.903][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:11.904][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:11.905][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:11.905][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:11.906][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:11.907][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:11.908][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:11.908][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:11.909][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:11.910][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:11.911][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:11.911][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:11.912][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:11.913][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:11.913][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:11.914][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:11.915][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:11.922][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:11.922][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:11.923][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:11.924][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:11.924][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:11.925][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:11.926][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:11.927][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:11.927][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:11.928][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:11.929][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:11.929][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:11.930][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:11.931][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:11.932][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:11.932][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:11.933][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:11.934][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:11.935][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:11.935][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:11.947][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:03:11.948][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:03:11.949][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:11.949][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:11.950][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:03:11.951][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:03:11.951][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:11.952][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:11.953][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:03:11.954][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:03:11.954][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:11.955][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:11.956][ef$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:03:11.956][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:03:11.957][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:11.958][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:11.958][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:03:11.959][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:03:11.960][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:11.960][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:11.967][ef$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:11.968][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:11.968][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:11.969][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:11.973][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:11.974][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:11.974][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:11.975][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:11.979][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:11.980][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:11.980][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:11.981][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:11.984][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:11.985][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:11.986][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:11.987][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:11.990][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:11.991][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:11.992][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:11.993][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:11.996][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:11.997][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:11.998][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:11.999][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:12.002][ef$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:03:12.003][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:03:12.004][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:12.004][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:12.008][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:03:12.009][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:03:12.009][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:12.010][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:12.014][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:03:12.014][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:03:12.015][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:12.016][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:12.020][ef$get] Asked field names are: logp.
biodb.TRACE[2024-09-07 16:03:12.021][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-09-07 16:03:12.021][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:12.022][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:12.026][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:12.027][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:12.027][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:12.028][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:12.032][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:12.033][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:12.033][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:12.034][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:12.038][ef$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:03:12.039][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:03:12.039][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:12.040][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:12.044][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:12.045][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:12.045][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:12.046][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:12.050][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:12.050][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:12.051][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:12.052][ef$get] fields variable is a list.
biodb.INFO [2024-09-07 16:03:12.058][biodb::testThat]
biodb.INFO [2024-09-07 16:03:12.059][biodb::testThat] Running test function  test.rt.unit  (" RT unit is defined when there is an RT value. ").
biodb.INFO [2024-09-07 16:03:12.060][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-09-07 16:03:12.060][biodb::testThat]
biodb.DEBUG[2024-09-07 16:03:12.062][private$loadEntries] Creating entries from ids [2]: "2, 65124".
biodb.DEBUG[2024-09-07 16:03:12.063][conn$getEntryContent] Get PubChem Compound entry content(s) for 2 id(s)...
biodb.TRACE[2024-09-07 16:03:12.065][cch$loadFileContent] Trying to load 2 files from cache: [2]: "2, 65124".
biodb.TRACE[2024-09-07 16:03:12.067][cch$loadFileContent] file.exist = [2]: "TRUE, TRUE".
biodb.TRACE[2024-09-07 16:03:12.069][loadFileContents] Loaded 2 files from cache: [2]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/2.xml, /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/65124.xml".
biodb.DEBUG[2024-09-07 16:03:12.070][conn$getEntryContent] 2 PubChem Compound entry content(s) loaded from cache.
biodb.DEBUG[2024-09-07 16:03:12.071][self$createEntryFromContent] Creating PubChem Compound entries from 2 content(s).
biodb.DEBUG[2024-09-07 16:03:12.071][self$createEntryFromContent] Parsing 2 PubChem Compound entries.
biodb.DEBUG[2024-09-07 16:03:12.073][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:03:12.073][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:03:12.074][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:03:12.078][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:03:12.078][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:03:12.079][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:03:12.080][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:03:12.081][ef$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:12.082][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:12.083][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:12.084][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:12.084][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:12.085][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:12.086][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:12.087][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:12.088][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:12.089][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:12.089][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:12.090][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:12.091][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:12.092][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:12.092][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:12.093][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:12.094][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:12.095][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:12.095][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:12.096][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:12.097][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:12.098][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:12.098][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:12.099][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:12.100][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:12.101][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:12.101][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:12.102][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:12.103][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:12.104][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:12.104][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:12.105][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:12.106][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:12.107][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:12.107][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:12.108][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:12.109][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:12.110][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:12.110][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:12.111][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:12.112][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:12.113][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:12.113][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:12.114][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:12.115][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:12.116][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:12.116][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:12.117][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:12.118][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2024-09-07 16:03:12.119][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:12.119][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:12.120][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:12.121][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-09-07 16:03:12.122][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:12.122][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:12.123][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:12.124][ef$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:03:12.125][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:03:12.125][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:12.126][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:12.127][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:03:12.128][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:03:12.128][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:12.129][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:12.130][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:03:12.130][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:03:12.131][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:12.132][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:12.133][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:03:12.133][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:03:12.134][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:12.135][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:12.136][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:03:12.136][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:03:12.137][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:12.138][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:12.139][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:03:12.139][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:03:12.140][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:12.141][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:12.141][ef$get] Asked field names are: logp.
biodb.TRACE[2024-09-07 16:03:12.142][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-09-07 16:03:12.143][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:12.144][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:12.144][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-09-07 16:03:12.145][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-09-07 16:03:12.146][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:12.147][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:12.148][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-09-07 16:03:12.149][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:12.149][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:12.150][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:12.151][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-09-07 16:03:12.152][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:12.152][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:12.153][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:12.154][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:12.155][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:12.155][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:12.156][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:12.157][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:12.158][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:12.158][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:12.159][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:12.160][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:12.161][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:12.161][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:12.162][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:12.163][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:12.163][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:12.164][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:12.165][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:12.166][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2024-09-07 16:03:12.166][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:12.167][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:12.168][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:12.168][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:12.169][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:12.170][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:12.171][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:12.171][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:12.172][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:12.173][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:12.173][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:12.174][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2024-09-07 16:03:12.175][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:12.175][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:12.176][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:12.177][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:12.178][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:12.178][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:12.179][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:12.180][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:12.180][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:12.181][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:12.182][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:12.182][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2024-09-07 16:03:12.183][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:12.184][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:12.184][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:12.185][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:12.186][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:12.187][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:12.187][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:12.188][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:12.189][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:12.189][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:12.190][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:12.191][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2024-09-07 16:03:12.192][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:12.192][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:12.193][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:12.194][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:12.195][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:12.195][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:12.196][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:12.197][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:12.197][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:12.198][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:12.199][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:12.199][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2024-09-07 16:03:12.200][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:12.201][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:12.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:12.202][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:12.203][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:12.204][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:12.205][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:12.205][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:12.206][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:12.212][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:12.212][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:12.213][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:03:12.214][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:03:12.215][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:12.215][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:12.216][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:12.217][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:12.218][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:12.218][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:12.219][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:12.220][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:12.221][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:12.221][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:12.222][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:12.223][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:12.224][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:12.224][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:12.225][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:12.226][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:12.227][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:12.227][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:12.228][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:12.229][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:12.229][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:12.230][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:12.231][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:12.232][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:12.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:12.233][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:12.234][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:12.235][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:12.235][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:12.236][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:03:12.237][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:03:12.237][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:03:12.238][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:03:12.242][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:03:12.243][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:03:12.243][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:03:12.244][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:03:12.246][ef$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:12.247][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:12.247][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:12.248][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:12.249][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:12.250][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:12.250][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:12.251][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:12.252][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:12.252][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:12.253][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:12.254][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:12.255][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:12.255][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:12.256][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:12.257][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:12.258][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:12.258][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:12.259][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:12.260][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:12.260][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:12.261][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:12.262][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:12.263][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:12.263][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:12.264][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:12.265][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:12.265][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:12.266][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:12.267][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:12.268][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:12.269][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:12.269][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:12.270][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:12.271][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:12.272][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:12.273][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:12.273][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:12.274][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:12.275][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:12.275][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:12.276][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:12.277][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:12.277][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:12.278][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:12.279][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:12.280][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:12.281][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:12.281][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2024-09-07 16:03:12.282][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:12.283][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:12.284][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:12.284][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-09-07 16:03:12.285][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:12.286][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:12.287][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:12.287][ef$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:03:12.288][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:03:12.289][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:12.290][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:12.290][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:03:12.291][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:03:12.292][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:12.293][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:12.293][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:03:12.294][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:03:12.295][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:12.295][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:12.296][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:03:12.297][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:03:12.298][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:12.299][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:12.300][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:03:12.300][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:03:12.301][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:12.302][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:12.303][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:03:12.304][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:03:12.305][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:12.305][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:12.306][ef$get] Asked field names are: logp.
biodb.TRACE[2024-09-07 16:03:12.307][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-09-07 16:03:12.308][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:12.308][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:12.309][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-09-07 16:03:12.310][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-09-07 16:03:12.311][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:12.312][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:12.313][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-09-07 16:03:12.313][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:12.314][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:12.315][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:12.316][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-09-07 16:03:12.316][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:12.317][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:12.318][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:12.319][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:12.319][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:12.320][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:12.321][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:12.322][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:12.322][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:12.323][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:12.324][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:12.325][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:12.326][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:12.326][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:12.327][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:12.328][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:12.329][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:12.329][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:12.330][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:12.331][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2024-09-07 16:03:12.331][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:12.332][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:12.333][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:12.334][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:12.334][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:12.335][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:12.336][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:12.336][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:12.337][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:12.338][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:12.339][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:12.340][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2024-09-07 16:03:12.340][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:12.341][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:12.342][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:12.342][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:12.343][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:12.344][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:12.345][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:12.345][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:12.346][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:12.347][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:12.348][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:12.348][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2024-09-07 16:03:12.349][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:12.350][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:12.350][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:12.351][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:12.352][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:12.353][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:12.353][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:12.354][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:12.355][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:12.356][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:12.356][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:12.357][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2024-09-07 16:03:12.358][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:12.359][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:12.359][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:12.360][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:12.361][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:12.361][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:12.362][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:12.363][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:12.364][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:12.364][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:12.365][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:12.366][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2024-09-07 16:03:12.367][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:12.367][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:12.368][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:12.369][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:12.369][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:12.370][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:12.371][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:12.371][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:12.372][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:12.373][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:12.374][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:12.374][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:03:12.375][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:03:12.376][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:12.376][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:12.377][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:12.378][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:12.379][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:12.379][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:12.380][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:12.381][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:12.381][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:12.382][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:12.383][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:12.384][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:12.385][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:12.385][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:12.386][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:12.387][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:12.387][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:12.388][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:12.389][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:12.390][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:12.390][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:12.391][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:12.392][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:12.392][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:12.393][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:12.394][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:12.395][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:12.395][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:12.396][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:12.397][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:12.397][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:12.398][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:12.399][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:12.400][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:12.400][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:12.401][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:12.402][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:12.402][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:12.403][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:12.404][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:12.405][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:12.405][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:12.406][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:12.407][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:12.408][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:12.408][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:12.409][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:12.410][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:12.410][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:12.411][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:12.412][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:12.413][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:12.413][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:12.414][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:03:12.415][self$createEntryFromContent] Accession numbers: 2, 65124.
biodb.TRACE[2024-09-07 16:03:12.416][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2024-09-07 16:03:12.416][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2024-09-07 16:03:12.417][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:12.418][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:12.418][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2024-09-07 16:03:12.419][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2024-09-07 16:03:12.420][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:12.421][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:12.421][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2024-09-07 16:03:12.422][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2024-09-07 16:03:12.423][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:12.423][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:12.428][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2024-09-07 16:03:12.429][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2024-09-07 16:03:12.430][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:12.430][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:12.431][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2024-09-07 16:03:12.432][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2024-09-07 16:03:12.433][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:12.433][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:12.434][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2024-09-07 16:03:12.435][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2024-09-07 16:03:12.435][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:12.436][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2024-09-07 16:03:12.443][biodb::testThat]
biodb.INFO [2024-09-07 16:03:12.444][biodb::testThat] Running test function  test.searchForEntries  (" We can search for an entry by searchable field ").
biodb.INFO [2024-09-07 16:03:12.444][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-09-07 16:03:12.445][biodb::testThat]
biodb.TRACE[2024-09-07 16:03:12.447][ef$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:03:12.448][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:03:12.449][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:12.449][ef$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:03:12.450][function(conn, opt)] Testing searchForEntries() with entry "2" and field "name".
biodb.TRACE[2024-09-07 16:03:12.461][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:03:12.462][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:03:12.462][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:12.463][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:12.464][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:03:12.464][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:03:12.465][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:12.466][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:12.466][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:03:12.467][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:03:12.468][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:12.469][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:03:12.475][function(conn, opt)] With value "(2-acetyloxy-3-carboxypropyl)-trimethylazanium".
biodb.DEBUG[2024-09-07 16:03:12.480][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term="(2-acetyloxy-3-carboxypropyl)-trimethylazanium"[IUPACName]&retmax=10".
biodb.DEBUG[2024-09-07 16:03:12.483][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-09-07 16:03:12.484][cch$loadFileContent] Trying to load 1 files from cache: [1]: "0c7e343368bb974cc0f019187ff4a141".
biodb.TRACE[2024-09-07 16:03:12.485][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-09-07 16:03:12.486][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/0c7e343368bb974cc0f019187ff4a141.content".
biodb.DEBUG[2024-09-07 16:03:12.487][function(conn, opt)] With found IDs [5]: "87229113, 25217148, 450343, 450342, 2".
biodb.TRACE[2024-09-07 16:03:12.497][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:12.498][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:12.499][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:12.499][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:12.500][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:12.501][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:12.502][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:12.502][ef$get] fields variable is a list.
biodb.INFO [2024-09-07 16:03:12.506][biodb::testThat]
biodb.INFO [2024-09-07 16:03:12.506][biodb::testThat] Running test function  test.searchByName  (" We can search for an entry by name. ").
biodb.INFO [2024-09-07 16:03:12.507][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-09-07 16:03:12.508][biodb::testThat]
biodb.TRACE[2024-09-07 16:03:12.516][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:03:12.517][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:03:12.518][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:12.518][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:12.519][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:03:12.520][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:03:12.520][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:12.521][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:12.522][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:03:12.522][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:03:12.523][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:12.524][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:03:12.544][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term="(2-acetyloxy-3-carboxypropyl)-trimethylazanium"[IUPACName]&retmax=10".
biodb.DEBUG[2024-09-07 16:03:12.546][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-09-07 16:03:12.547][cch$loadFileContent] Trying to load 1 files from cache: [1]: "0c7e343368bb974cc0f019187ff4a141".
biodb.TRACE[2024-09-07 16:03:12.548][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-09-07 16:03:12.549][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/0c7e343368bb974cc0f019187ff4a141.content".
biodb.INFO [2024-09-07 16:03:12.563][biodb::testThat]
biodb.INFO [2024-09-07 16:03:12.564][biodb::testThat] Running test function  testEntryLoading  (" We can load an entry from the database. ").
biodb.INFO [2024-09-07 16:03:12.564][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-09-07 16:03:12.565][biodb::testThat]
biodb.TRACE[2024-09-07 16:03:12.573][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-09-07 16:03:12.574][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-09-07 16:03:12.574][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:12.575][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:12.576][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-09-07 16:03:12.576][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-09-07 16:03:12.577][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:12.578][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:12.579][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-09-07 16:03:12.579][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-09-07 16:03:12.580][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:12.581][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:12.582][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-09-07 16:03:12.582][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-09-07 16:03:12.583][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:12.584][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:12.584][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-09-07 16:03:12.585][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-09-07 16:03:12.586][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:12.587][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:12.587][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-09-07 16:03:12.588][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-09-07 16:03:12.589][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:12.589][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:12.590][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-09-07 16:03:12.591][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-09-07 16:03:12.591][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:12.592][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:12.594][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-09-07 16:03:12.594][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-09-07 16:03:12.595][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:12.596][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:12.596][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-09-07 16:03:12.597][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-09-07 16:03:12.598][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:12.599][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:12.599][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-09-07 16:03:12.600][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-09-07 16:03:12.601][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:12.601][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:12.602][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-09-07 16:03:12.603][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-09-07 16:03:12.604][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:12.604][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:12.605][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-09-07 16:03:12.606][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-09-07 16:03:12.606][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:12.607][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:12.608][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-09-07 16:03:12.609][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-09-07 16:03:12.609][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:12.610][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:12.611][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-09-07 16:03:12.611][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-09-07 16:03:12.612][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:12.613][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2024-09-07 16:03:12.618][biodb::testThat]
biodb.INFO [2024-09-07 16:03:12.619][biodb::testThat] Running test function  test.entry.page.url  (" We can get a URL pointing to the entry page. ").
biodb.INFO [2024-09-07 16:03:12.620][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-09-07 16:03:12.620][biodb::testThat]
biodb.INFO [2024-09-07 16:03:12.627][biodb::testThat]
biodb.INFO [2024-09-07 16:03:12.627][biodb::testThat] Running test function  test.entry.image.url  (" We can get a URL pointing to the entry image. ").
biodb.INFO [2024-09-07 16:03:12.628][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-09-07 16:03:12.629][biodb::testThat]
biodb.INFO [2024-09-07 16:03:12.635][biodb::testThat]
biodb.INFO [2024-09-07 16:03:12.635][biodb::testThat] Running test function  test.entry.page.url.download  (" The entry page URL can be downloaded. ").
biodb.INFO [2024-09-07 16:03:12.636][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-09-07 16:03:12.637][biodb::testThat]
biodb.DEBUG[2024-09-07 16:03:12.640][function(conn, opt)] Trying to download "https://pubchem.ncbi.nlm.nih.gov/compound/2".
biodb.DEBUG[2024-09-07 16:03:19.038][getUrlContent] Use RCurl for downloading content of URL https://pubchem.ncbi.nlm.nih.gov/compound/2.
biodb.INFO [2024-09-07 16:03:19.176][biodb::testThat]
biodb.INFO [2024-09-07 16:03:19.177][biodb::testThat] Running test function  test.entry.image.url.download  (" The entry image URL can be downloaded. ").
biodb.INFO [2024-09-07 16:03:19.178][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-09-07 16:03:19.179][biodb::testThat]
biodb.DEBUG[2024-09-07 16:03:19.301][getUrlContent] Use RCurl for downloading content of URL https://pubchem.ncbi.nlm.nih.gov/image/imgsrv.fcgi?cid=2&t=l.
biodb.TRACE[2024-09-07 16:03:19.393][ef$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:03:19.394][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:03:19.395][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:19.395][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:19.396][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:19.397][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:19.397][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:19.398][ef$get] fields variable is a list.
biodb.INFO [2024-09-07 16:03:19.400][biodb::testThat]
biodb.INFO [2024-09-07 16:03:19.400][biodb::testThat] Running test function  test.searchCompound  (" We can search for a compound ").
biodb.INFO [2024-09-07 16:03:19.401][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-09-07 16:03:19.402][biodb::testThat]
biodb.TRACE[2024-09-07 16:03:19.410][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:03:19.411][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:03:19.412][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:19.413][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:19.413][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:03:19.414][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:03:19.415][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:19.416][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:19.417][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:03:19.417][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:03:19.418][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:19.419][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:03:19.495][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term="(2-acetyloxy-3-carboxypropyl)-trimethylazanium"[IUPACName]&retmax=10".
biodb.DEBUG[2024-09-07 16:03:19.498][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-09-07 16:03:19.499][cch$loadFileContent] Trying to load 1 files from cache: [1]: "0c7e343368bb974cc0f019187ff4a141".
biodb.TRACE[2024-09-07 16:03:19.499][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-09-07 16:03:19.500][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/0c7e343368bb974cc0f019187ff4a141.content".
biodb.DEBUG[2024-09-07 16:03:19.550][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term="(2-acetyloxy-3-carboxypropyl)-trimethylazanium"[IUPACName]&retmax=10".
biodb.DEBUG[2024-09-07 16:03:19.553][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-09-07 16:03:19.554][cch$loadFileContent] Trying to load 1 files from cache: [1]: "0c7e343368bb974cc0f019187ff4a141".
biodb.TRACE[2024-09-07 16:03:19.555][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-09-07 16:03:19.556][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/0c7e343368bb974cc0f019187ff4a141.content".
biodb.TRACE[2024-09-07 16:03:19.567][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-09-07 16:03:19.568][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-09-07 16:03:19.568][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:19.569][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:19.574][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:19.574][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:19.575][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:19.576][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:19.576][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:19.577][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:19.578][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:19.579][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:19.580][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:19.580][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:19.581][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:19.582][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:19.583][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:19.584][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:19.584][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:19.585][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:19.586][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:19.587][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:19.588][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:19.588][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:03:19.595][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.23:204.25[MolecularWeight]&retmax=3".
biodb.DEBUG[2024-09-07 16:03:19.597][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-09-07 16:03:19.598][cch$loadFileContent] Trying to load 1 files from cache: [1]: "2616ca37a6f6e1bc281f8c51bc53ce81".
biodb.TRACE[2024-09-07 16:03:19.599][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-09-07 16:03:19.600][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/2616ca37a6f6e1bc281f8c51bc53ce81.content".
biodb.DEBUG[2024-09-07 16:03:19.612][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.23:204.25[MolecularWeight]&retmax=1000000".
biodb.DEBUG[2024-09-07 16:03:19.614][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-09-07 16:03:19.615][cch$loadFileContent] Trying to load 1 files from cache: [1]: "43af01c58cfaf2fe3448c11004a21986".
biodb.TRACE[2024-09-07 16:03:19.616][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-09-07 16:03:19.618][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/43af01c58cfaf2fe3448c11004a21986.content".
biodb.DEBUG[2024-09-07 16:03:19.822][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term="(2-acetyloxy-3-carboxypropyl)-trimethylazanium"[IUPACName] AND 204.23:204.25[MolecularWeight]&retmax=1000000".
biodb.DEBUG[2024-09-07 16:03:19.825][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-09-07 16:03:19.826][cch$loadFileContent] Trying to load 1 files from cache: [1]: "5a651e56a091cb06291b388106735d55".
biodb.TRACE[2024-09-07 16:03:19.827][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-09-07 16:03:19.828][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/5a651e56a091cb06291b388106735d55.content".
biodb.DEBUG[2024-09-07 16:03:19.846][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term="(2-acetyloxy-3-carboxypropyl)-trimethylazanium"[IUPACName] AND 204.23:204.27[MolecularWeight]&retmax=1000000".
biodb.DEBUG[2024-09-07 16:03:19.848][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-09-07 16:03:19.849][cch$loadFileContent] Trying to load 1 files from cache: [1]: "d3d0da2755d093596dae584b7698bc73".
biodb.TRACE[2024-09-07 16:03:19.850][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-09-07 16:03:19.851][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/d3d0da2755d093596dae584b7698bc73.content".
biodb.TRACE[2024-09-07 16:03:19.881][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:19.882][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:19.883][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:19.884][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:19.884][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:19.885][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:19.886][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:19.886][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:19.887][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:19.888][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:19.889][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:19.890][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:19.890][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:19.891][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:19.892][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:19.892][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:19.893][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:19.894][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:19.895][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:19.895][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:03:19.900][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.12358305:204.12358307[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2024-09-07 16:03:19.903][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-09-07 16:03:19.904][cch$loadFileContent] Trying to load 1 files from cache: [1]: "1384af38a786fc6768cd7f1e796d96ab".
biodb.TRACE[2024-09-07 16:03:19.904][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-09-07 16:03:19.906][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/1384af38a786fc6768cd7f1e796d96ab.content".
biodb.DEBUG[2024-09-07 16:03:19.917][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.12358305:204.12358307[MonoisotopicMass]&retmax=1000000".
biodb.DEBUG[2024-09-07 16:03:19.920][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-09-07 16:03:19.921][cch$loadFileContent] Trying to load 1 files from cache: [1]: "983d3a3af3901d23b5d919d379c6bd32".
biodb.TRACE[2024-09-07 16:03:19.921][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-09-07 16:03:19.923][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/983d3a3af3901d23b5d919d379c6bd32.content".
biodb.DEBUG[2024-09-07 16:03:19.935][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term="(2-acetyloxy-3-carboxypropyl)-trimethylazanium"[IUPACName] AND 204.12358305:204.12358307[MonoisotopicMass]&retmax=1000000".
biodb.DEBUG[2024-09-07 16:03:19.938][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-09-07 16:03:19.939][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b9a9be2efcff8c77fef3b8a87f25b444".
biodb.TRACE[2024-09-07 16:03:19.940][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-09-07 16:03:19.941][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/b9a9be2efcff8c77fef3b8a87f25b444.content".
biodb.DEBUG[2024-09-07 16:03:19.959][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term="(2-acetyloxy-3-carboxypropyl)-trimethylazanium"[IUPACName] AND 204.12358305:204.12358309[MonoisotopicMass]&retmax=1000000".
biodb.DEBUG[2024-09-07 16:03:19.961][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-09-07 16:03:19.962][cch$loadFileContent] Trying to load 1 files from cache: [1]: "6d4e46c6f0a021fc6e92911d60537192".
biodb.TRACE[2024-09-07 16:03:19.963][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-09-07 16:03:19.965][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/6d4e46c6f0a021fc6e92911d60537192.content".
biodb.TRACE[2024-09-07 16:03:19.979][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2024-09-07 16:03:19.979][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2024-09-07 16:03:19.980][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:19.981][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2024-09-07 16:03:19.988][biodb::testThat]
biodb.INFO [2024-09-07 16:03:19.989][biodb::testThat] Running test function  test_annotateMzValues_input_vector  (" annotateMzValues() accepts a single vector. ").
biodb.INFO [2024-09-07 16:03:19.989][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-09-07 16:03:19.990][biodb::testThat]
biodb.TRACE[2024-09-07 16:03:19.992][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-09-07 16:03:19.993][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-09-07 16:03:19.994][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:19.995][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:19.995][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-09-07 16:03:19.996][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-09-07 16:03:19.997][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:19.998][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:19.998][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:19.999][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:20.000][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:20.000][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:20.001][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:20.002][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:20.003][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:20.003][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:20.004][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:20.005][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:20.005][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:20.006][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:20.007][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:20.008][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:20.008][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:20.009][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:20.010][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:20.011][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:20.011][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:20.012][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:20.013][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:20.014][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:20.015][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:20.015][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:20.016][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:20.017][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:20.018][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:20.018][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:20.019][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:20.020][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:20.021][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:20.021][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:03:20.024][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:03:20.025][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:03:20.026][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:03:20.030][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:03:20.031][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:03:20.031][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:03:20.032][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:03:20.037][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.23:204.25[MolecularWeight]&retmax=3".
biodb.DEBUG[2024-09-07 16:03:20.040][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-09-07 16:03:20.041][cch$loadFileContent] Trying to load 1 files from cache: [1]: "2616ca37a6f6e1bc281f8c51bc53ce81".
biodb.TRACE[2024-09-07 16:03:20.041][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-09-07 16:03:20.042][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/2616ca37a6f6e1bc281f8c51bc53ce81.content".
biodb.DEBUG[2024-09-07 16:03:20.044][private$loadEntries] Creating entries from ids [3]: "171920215, 171904710, 171871699".
biodb.DEBUG[2024-09-07 16:03:20.044][conn$getEntryContent] Get PubChem Compound entry content(s) for 3 id(s)...
biodb.TRACE[2024-09-07 16:03:20.046][cch$loadFileContent] Trying to load 3 files from cache: [3]: "171920215, 171904710, 171871699".
biodb.TRACE[2024-09-07 16:03:20.046][cch$loadFileContent] file.exist = [3]: "TRUE, TRUE, TRUE".
biodb.TRACE[2024-09-07 16:03:20.049][loadFileContents] Loaded 3 files from cache: [3]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/171920215.xml, /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/171904710.xml, /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/171871699.xml".
biodb.DEBUG[2024-09-07 16:03:20.050][conn$getEntryContent] 3 PubChem Compound entry content(s) loaded from cache.
biodb.DEBUG[2024-09-07 16:03:20.051][self$createEntryFromContent] Creating PubChem Compound entries from 3 content(s).
biodb.DEBUG[2024-09-07 16:03:20.052][self$createEntryFromContent] Parsing 3 PubChem Compound entries.
biodb.DEBUG[2024-09-07 16:03:20.053][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:03:20.054][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:03:20.054][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:03:20.059][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:03:20.059][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:03:20.060][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:03:20.061][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:03:20.063][ef$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:20.064][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:20.064][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:20.065][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:20.066][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:20.067][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:20.067][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:20.068][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:20.069][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:20.070][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:20.070][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:20.071][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:20.072][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:20.073][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:20.074][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:20.074][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:20.075][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:20.076][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:20.077][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:20.078][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:20.079][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:20.079][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:20.080][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:20.081][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:20.081][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:20.082][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:20.083][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:20.084][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:20.085][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:20.086][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:20.086][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:20.087][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:20.088][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:20.089][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:20.089][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:20.090][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:20.091][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:20.092][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:20.093][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:20.093][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:20.094][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:20.095][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:20.096][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:20.096][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:20.097][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:20.098][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:20.099][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:20.099][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:20.100][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2024-09-07 16:03:20.101][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:20.102][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:20.103][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:20.104][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-09-07 16:03:20.104][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:20.105][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:20.106][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:20.107][ef$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:03:20.107][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:03:20.108][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:20.109][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:20.110][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:03:20.111][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:03:20.111][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:20.112][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:20.113][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:03:20.114][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:03:20.114][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:20.115][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:20.116][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:03:20.117][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:03:20.117][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:20.118][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:20.119][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:03:20.120][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:03:20.120][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:20.121][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:20.122][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:03:20.123][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:03:20.123][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:20.124][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:20.125][ef$get] Asked field names are: logp.
biodb.TRACE[2024-09-07 16:03:20.126][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-09-07 16:03:20.126][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:20.127][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:20.128][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-09-07 16:03:20.129][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-09-07 16:03:20.130][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:20.130][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:20.131][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-09-07 16:03:20.132][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:20.133][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:20.133][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:20.134][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-09-07 16:03:20.141][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:20.142][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:20.142][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:20.143][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:20.144][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:20.144][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:20.145][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:20.146][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:20.147][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:20.148][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:20.148][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:20.149][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:20.150][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:20.151][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:20.152][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:20.153][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:20.153][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:20.154][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:20.155][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:20.156][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2024-09-07 16:03:20.156][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:20.157][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:20.158][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:20.159][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:20.159][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:20.160][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:20.161][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:20.162][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:20.162][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:20.163][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:20.164][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:20.165][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2024-09-07 16:03:20.165][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:20.166][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:20.167][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:20.168][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:20.168][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:20.169][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:20.170][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:20.171][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:20.171][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:20.172][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:20.173][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:20.174][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2024-09-07 16:03:20.175][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:20.175][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:20.176][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:20.177][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:20.177][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:20.178][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:20.179][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:20.179][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:20.180][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:20.181][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:20.182][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:20.183][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2024-09-07 16:03:20.183][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:20.184][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:20.185][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:20.186][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:20.186][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:20.187][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:20.188][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:20.188][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:20.189][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:20.190][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:20.191][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:20.192][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2024-09-07 16:03:20.192][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:20.193][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:20.194][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:20.195][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:20.195][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:20.196][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:20.197][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:20.198][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:20.199][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:20.199][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:20.200][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:20.201][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:03:20.201][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:03:20.202][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:20.203][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:20.204][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:20.204][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:20.205][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:20.206][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:20.206][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:20.207][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:20.208][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:20.209][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:20.210][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:20.211][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:20.211][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:20.212][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:20.213][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:20.213][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:20.214][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:20.215][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:20.216][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:20.217][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:20.217][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:20.218][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:20.219][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:20.220][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:20.220][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:20.221][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:20.222][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:20.223][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:20.224][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:20.224][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:03:20.225][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:03:20.226][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:03:20.226][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:03:20.231][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:03:20.232][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:03:20.232][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:03:20.233][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:03:20.235][ef$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:20.236][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:20.237][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:20.237][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:20.238][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:20.239][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:20.240][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:20.240][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:20.241][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:20.242][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:20.243][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:20.244][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:20.245][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:20.245][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:20.246][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:20.247][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:20.248][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:20.248][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:20.249][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:20.250][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:20.251][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:20.252][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:20.252][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:20.253][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:20.254][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:20.255][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:20.255][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:20.256][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:20.257][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:20.258][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:20.259][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:20.259][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:20.260][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:20.261][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:20.262][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:20.262][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:20.263][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:20.264][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:20.265][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:20.266][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:20.266][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:20.267][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:20.268][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:20.269][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:20.270][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:20.270][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:20.271][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:20.272][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:20.273][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2024-09-07 16:03:20.274][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:20.274][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:20.275][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:20.276][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-09-07 16:03:20.277][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:20.278][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:20.278][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:20.279][ef$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:03:20.280][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:03:20.281][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:20.282][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:20.282][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:03:20.283][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:03:20.284][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:20.285][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:20.286][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:03:20.287][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:03:20.287][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:20.288][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:20.289][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:03:20.290][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:03:20.291][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:20.291][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:20.292][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:03:20.293][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:03:20.294][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:20.295][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:20.296][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:03:20.296][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:03:20.297][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:20.298][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:20.299][ef$get] Asked field names are: logp.
biodb.TRACE[2024-09-07 16:03:20.300][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-09-07 16:03:20.301][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:20.301][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:20.302][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-09-07 16:03:20.303][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-09-07 16:03:20.304][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:20.304][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:20.305][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-09-07 16:03:20.306][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:20.307][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:20.307][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:20.308][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-09-07 16:03:20.309][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:20.310][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:20.311][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:20.311][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:20.312][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:20.313][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:20.314][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:20.315][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:20.315][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:20.316][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:20.317][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:20.318][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:20.319][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:20.319][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:20.320][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:20.321][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:20.322][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:20.323][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:20.323][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:20.324][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2024-09-07 16:03:20.325][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:20.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:20.327][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:20.327][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:20.328][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:20.329][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:20.330][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:20.330][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:20.331][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:20.332][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:20.333][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:20.333][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2024-09-07 16:03:20.334][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:20.335][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:20.336][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:20.336][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:20.337][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:20.338][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:20.339][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:20.339][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:20.340][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:20.341][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:20.341][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:20.342][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2024-09-07 16:03:20.343][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:20.344][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:20.345][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:20.345][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:20.346][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:20.347][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:20.348][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:20.348][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:20.349][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:20.350][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:20.350][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:20.351][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2024-09-07 16:03:20.352][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:20.353][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:20.354][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:20.354][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:20.355][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:20.356][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:20.356][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:20.357][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:20.358][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:20.359][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:20.360][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:20.360][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2024-09-07 16:03:20.361][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:20.362][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:20.363][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:20.363][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:20.364][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:20.365][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:20.365][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:20.366][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:20.367][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:20.368][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:20.369][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:20.369][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:03:20.370][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:03:20.371][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:20.372][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:20.373][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:20.373][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:20.374][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:20.375][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:20.376][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:20.377][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:20.377][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:20.378][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:20.379][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:20.379][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:20.380][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:20.381][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:20.382][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:20.383][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:20.383][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:20.389][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:20.390][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:20.391][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:20.392][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:20.392][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:20.393][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:20.394][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:20.395][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:20.395][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:20.396][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:20.397][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:20.398][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:20.398][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:03:20.399][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:03:20.400][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:03:20.401][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:03:20.405][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:03:20.405][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:03:20.406][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:03:20.407][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:03:20.409][ef$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:20.410][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:20.410][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:20.411][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:20.412][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:20.413][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:20.414][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:20.414][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:20.415][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:20.416][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:20.417][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:20.418][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:20.419][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:20.419][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:20.420][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:20.421][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:20.422][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:20.422][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:20.423][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:20.424][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:20.425][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:20.426][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:20.426][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:20.427][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:20.428][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:20.429][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:20.429][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:20.430][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:20.431][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:20.432][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:20.433][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:20.433][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:20.434][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:20.435][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:20.435][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:20.436][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:20.437][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:20.438][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:20.439][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:20.439][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:20.440][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:20.441][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:20.442][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:20.442][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:20.443][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:20.444][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:20.445][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:20.446][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:20.446][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2024-09-07 16:03:20.447][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:20.448][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:20.449][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:20.450][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-09-07 16:03:20.450][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:20.451][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:20.452][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:20.453][ef$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:03:20.453][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:03:20.454][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:20.455][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:20.456][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:03:20.457][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:03:20.457][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:20.458][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:20.459][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:03:20.460][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:03:20.460][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:20.461][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:20.462][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:03:20.463][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:03:20.464][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:20.465][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:20.465][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:03:20.466][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:03:20.467][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:20.468][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:20.469][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:03:20.469][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:03:20.470][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:20.471][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:20.472][ef$get] Asked field names are: logp.
biodb.TRACE[2024-09-07 16:03:20.472][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-09-07 16:03:20.473][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:20.474][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:20.475][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-09-07 16:03:20.475][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-09-07 16:03:20.476][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:20.477][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:20.478][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-09-07 16:03:20.479][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:20.479][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:20.480][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:20.481][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-09-07 16:03:20.482][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:20.483][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:20.483][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:20.484][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:20.485][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:20.486][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:20.486][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:20.487][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:20.488][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:20.489][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:20.490][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:20.490][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:20.491][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:20.492][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:20.493][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:20.494][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:20.494][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:20.495][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:20.496][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:20.497][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2024-09-07 16:03:20.497][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:20.498][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:20.499][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:20.500][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:20.500][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:20.501][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:20.502][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:20.503][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:20.504][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:20.504][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:20.505][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:20.506][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2024-09-07 16:03:20.506][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:20.507][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:20.508][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:20.509][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:20.510][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:20.510][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:20.511][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:20.512][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:20.513][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:20.513][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:20.514][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:20.515][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2024-09-07 16:03:20.516][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:20.516][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:20.517][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:20.518][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:20.519][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:20.519][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:20.520][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:20.521][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:20.521][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:20.522][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:20.523][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:20.524][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2024-09-07 16:03:20.525][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:20.525][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:20.526][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:20.527][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:20.528][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:20.528][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:20.529][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:20.530][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:20.531][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:20.532][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:20.532][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:20.533][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2024-09-07 16:03:20.534][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:20.535][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:20.535][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:20.536][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:20.537][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:20.538][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:20.538][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:20.539][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:20.540][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:20.541][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:20.542][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:20.542][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:03:20.543][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:03:20.544][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:20.544][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:20.545][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:20.546][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:20.547][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:20.547][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:20.548][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:20.549][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:20.550][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:20.551][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:20.551][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:20.552][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:20.553][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:20.554][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:20.555][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:20.555][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:20.556][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:20.557][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:20.557][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:20.558][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:20.559][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:20.560][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:20.560][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:20.561][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:20.562][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:20.563][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:20.564][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:20.564][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:20.565][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:20.566][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:20.567][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:20.567][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:20.568][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:20.569][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:20.570][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:20.570][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:20.571][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:20.572][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:20.573][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:20.573][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:20.574][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:20.575][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:20.576][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:20.576][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:20.577][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:20.578][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:20.579][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:20.579][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:20.580][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:20.581][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:20.582][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:20.582][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:20.583][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:20.584][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:20.584][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:20.585][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:20.586][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:20.587][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:20.587][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:20.588][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:20.589][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:20.590][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:20.590][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:20.591][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:20.592][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:20.593][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:03:20.593][self$createEntryFromContent] Accession numbers: 171920215, 171904710, 171871699.
biodb.DEBUG[2024-09-07 16:03:20.594][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-09-07 16:03:20.595][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:03:20.596][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:03:20.597][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:03:20.601][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:03:20.602][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:03:20.602][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:03:20.603][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:03:20.604][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:20.605][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:20.606][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:20.606][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:20.607][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:20.608][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:20.608][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:20.609][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:20.610][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-09-07 16:03:20.611][private$selectFields]
biodb.TRACE[2024-09-07 16:03:20.611][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-09-07 16:03:20.612][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-09-07 16:03:20.613][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-09-07 16:03:20.613][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:20.614][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:20.615][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:20.616][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:20.616][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:20.617][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:20.618][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:20.619][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:20.620][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-09-07 16:03:20.620][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-09-07 16:03:20.621][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:20.622][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:20.622][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:20.623][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:20.624][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-09-07 16:03:20.625][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:20.626][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:20.626][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:20.627][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:20.628][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:20.629][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:20.629][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:20.630][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:20.631][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:20.637][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:20.638][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:20.638][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:20.645][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171920215].
biodb.DEBUG[2024-09-07 16:03:20.646][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:03:20.647][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:03:20.647][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:03:20.652][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:03:20.652][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:03:20.653][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:03:20.654][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:03:20.655][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:20.655][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:20.656][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:20.657][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:20.657][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:20.658][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:20.659][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:20.659][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:20.660][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-09-07 16:03:20.661][private$selectFields]
biodb.TRACE[2024-09-07 16:03:20.662][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-09-07 16:03:20.662][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-09-07 16:03:20.663][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-09-07 16:03:20.664][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:20.665][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:20.665][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:20.666][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:20.667][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:20.667][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:20.668][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:20.669][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:20.670][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-09-07 16:03:20.670][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-09-07 16:03:20.671][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:20.672][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:20.673][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:20.673][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:20.674][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-09-07 16:03:20.675][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:20.676][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:20.676][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:20.677][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:20.678][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:20.679][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:20.679][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:20.680][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:20.681][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:20.682][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:20.682][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:20.683][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:20.684][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171904710].
biodb.DEBUG[2024-09-07 16:03:20.685][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:03:20.685][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:03:20.686][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:03:20.690][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:03:20.691][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:03:20.692][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:03:20.692][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:03:20.693][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:20.694][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:20.695][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:20.695][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:20.696][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:20.697][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:20.697][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:20.698][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:20.699][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-09-07 16:03:20.699][private$selectFields]
biodb.TRACE[2024-09-07 16:03:20.700][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-09-07 16:03:20.701][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-09-07 16:03:20.702][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-09-07 16:03:20.702][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:20.703][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:20.704][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:20.704][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:20.705][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:20.706][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:20.707][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:20.707][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:20.708][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-09-07 16:03:20.709][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-09-07 16:03:20.710][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:20.710][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:20.711][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:20.712][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:20.713][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-09-07 16:03:20.713][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:20.714][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:20.715][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:20.716][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:20.716][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:20.717][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:20.718][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:20.719][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:20.720][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:20.720][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:20.721][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:20.722][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:20.723][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171871699].
biodb.DEBUG[2024-09-07 16:03:20.724][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-09-07 16:03:20.725][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-09-07 16:03:20.727][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:03:20.728][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:03:20.728][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:03:20.732][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:03:20.733][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:03:20.734][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:03:20.734][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:03:20.739][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18:226.2[MolecularWeight]&retmax=3".
biodb.DEBUG[2024-09-07 16:03:20.742][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-09-07 16:03:20.743][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-09-07 16:03:20.744][private$doSendRequestOnce] Sent URL is "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18%3A226.2%5BMolecularWeight%5D&retmax=3".
biodb.TRACE[2024-09-07 16:03:20.865][doesRCurlRequestUrlExist] According to RCurl, URL https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18%3A226.2%5BMolecularWeight%5D&retmax=3 does not exist.
biodb.TRACE[2024-09-07 16:03:20.866][getUrlRequestResult] Using base::url() for sending request.
biodb.DEBUG[2024-09-07 16:03:20.867][getUrlRequestResult] URL "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18%3A226.2%5BMolecularWeight%5D&retmax=3" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
biodb.TRACE[2024-09-07 16:03:20.868][getBaseUrlRequestResult] Using base::url() for sending request (https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18%3A226.2%5BMolecularWeight%5D&retmax=3).
biodb.DEBUG[2024-09-07 16:03:20.961][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2024-09-07 16:03:20.963][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/69c19f6998e271aebdcd09a030d9b450.content"
biodb.TRACE[2024-09-07 16:03:20.966][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/69c19f6998e271aebdcd09a030d9b450.request"
biodb.DEBUG[2024-09-07 16:03:20.968][private$loadEntries] Creating entries from ids [3]: "171901106, 171901072, 171877309".
biodb.DEBUG[2024-09-07 16:03:20.969][conn$getEntryContent] Get PubChem Compound entry content(s) for 3 id(s)...
biodb.TRACE[2024-09-07 16:03:20.970][cch$loadFileContent] Trying to load 3 files from cache: [3]: "171901106, 171901072, 171877309".
biodb.TRACE[2024-09-07 16:03:20.971][cch$loadFileContent] file.exist = [3]: "FALSE, FALSE, FALSE".
biodb.TRACE[2024-09-07 16:03:20.972][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-09-07 16:03:20.973][conn$getEntryContent] 0 PubChem Compound entry content(s) loaded from cache.
biodb.DEBUG[2024-09-07 16:03:20.974][conn$getEntryContent] 3 entry content(s) need to be fetched from PubChem Compound database "https://pubchem.ncbi.nlm.nih.gov/".
biodb.DEBUG[2024-09-07 16:03:20.975][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-09-07 16:03:20.975][conn$getEntryContent] 1 chunk(s) to download.
biodb.INFO [2024-09-07 16:03:20.976][private$retrieveContents] Get entry content(s) for 3 id(s)...
biodb.DEBUG[2024-09-07 16:03:20.978][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/171901106,171901072,171877309/XML".
biodb.DEBUG[2024-09-07 16:03:20.989][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-09-07 16:03:20.990][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-09-07 16:03:20.991][private$doSendRequestOnce] Sent URL is "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/171901106,171901072,171877309/XML".
biodb.TRACE[2024-09-07 16:03:21.106][getRCurlRequestResult] Using RCurl package for sending request (https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/171901106,171901072,171877309/XML).
biodb.TRACE[2024-09-07 16:03:21.358][private$doSaveContentToFile] Saving to cache [3]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/171901106.xml, /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/171901072.xml, /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/171877309.xml"
biodb.DEBUG[2024-09-07 16:03:21.360][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-09-07 16:03:21.361][self$createEntryFromContent] Creating PubChem Compound entries from 3 content(s).
biodb.DEBUG[2024-09-07 16:03:21.362][self$createEntryFromContent] Parsing 3 PubChem Compound entries.
biodb.DEBUG[2024-09-07 16:03:21.364][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:03:21.364][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:03:21.365][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:03:21.369][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:03:21.370][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:03:21.370][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:03:21.371][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:03:21.373][ef$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:21.374][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:21.375][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:21.375][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:21.376][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:21.377][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:21.378][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:21.378][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:21.379][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:21.380][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:21.381][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:21.381][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:21.382][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:21.383][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:21.384][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:21.385][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:21.385][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:21.386][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:21.387][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:21.388][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:21.389][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:21.390][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:21.390][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:21.391][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:21.392][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:21.393][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:21.393][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:21.394][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:21.395][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:21.396][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:21.397][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:21.397][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:21.398][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:21.399][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:21.400][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:21.401][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:21.402][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:21.402][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:21.403][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:21.404][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:21.405][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:21.406][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:21.406][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:21.407][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:21.408][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:21.409][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:21.410][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:21.411][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:21.411][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2024-09-07 16:03:21.412][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:21.413][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:21.414][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:21.415][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-09-07 16:03:21.415][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:21.416][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:21.417][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:21.418][ef$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:03:21.418][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:03:21.419][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:21.420][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:21.421][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:03:21.422][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:03:21.422][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:21.423][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:21.424][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:03:21.425][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:03:21.426][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:21.426][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:21.427][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:03:21.428][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:03:21.429][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:21.429][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:21.430][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:03:21.431][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:03:21.432][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:21.432][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:21.433][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:03:21.434][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:03:21.435][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:21.435][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:21.436][ef$get] Asked field names are: logp.
biodb.TRACE[2024-09-07 16:03:21.437][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-09-07 16:03:21.437][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:21.438][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:21.439][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-09-07 16:03:21.440][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-09-07 16:03:21.441][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:21.441][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:21.442][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-09-07 16:03:21.443][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:21.444][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:21.444][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:21.445][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-09-07 16:03:21.446][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:21.447][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:21.448][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:21.449][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:21.449][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:21.450][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:21.451][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:21.452][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:21.453][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:21.454][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:21.464][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:21.464][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:21.465][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:21.466][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:21.467][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:21.468][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:21.468][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:21.469][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:21.470][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:21.470][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2024-09-07 16:03:21.471][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:21.472][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:21.472][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:21.473][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:21.474][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:21.475][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:21.476][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:21.476][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:21.477][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:21.478][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:21.478][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:21.479][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2024-09-07 16:03:21.480][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:21.481][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:21.481][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:21.482][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:21.483][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:21.484][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:21.485][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:21.485][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:21.486][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:21.487][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:21.487][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:21.488][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2024-09-07 16:03:21.489][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:21.489][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:21.490][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:21.491][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:21.492][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:21.492][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:21.493][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:21.494][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:21.494][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:21.495][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:21.496][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:21.497][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2024-09-07 16:03:21.497][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:21.498][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:21.499][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:21.500][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:21.500][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:21.501][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:21.502][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:21.503][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:21.503][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:21.504][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:21.505][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:21.506][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2024-09-07 16:03:21.506][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:21.507][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:21.508][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:21.508][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:21.509][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:21.510][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:21.510][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:21.511][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:21.512][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:21.513][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:21.513][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:21.514][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:03:21.515][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:03:21.516][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:21.516][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:21.517][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:21.518][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:21.519][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:21.519][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:21.520][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:21.521][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:21.522][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:21.523][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:21.523][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:21.524][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:21.525][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:21.525][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:21.526][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:21.527][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:21.528][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:21.528][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:21.529][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:21.530][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:21.531][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:21.531][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:21.532][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:21.533][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:21.534][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:21.535][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:21.535][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:21.536][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:21.537][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:21.538][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:03:21.539][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:03:21.539][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:03:21.540][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:03:21.544][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:03:21.545][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:03:21.546][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:03:21.546][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:03:21.548][ef$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:21.549][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:21.550][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:21.551][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:21.552][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:21.553][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:21.553][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:21.554][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:21.555][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:21.555][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:21.556][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:21.557][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:21.558][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:21.559][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:21.559][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:21.560][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:21.561][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:21.562][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:21.562][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:21.563][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:21.564][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:21.565][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:21.566][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:21.567][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:21.567][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:21.568][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:21.569][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:21.570][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:21.571][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:21.572][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:21.573][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:21.573][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:21.574][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:21.575][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:21.576][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:21.576][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:21.577][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:21.578][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:21.579][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:21.580][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:21.581][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:21.581][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:21.582][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:21.583][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:21.584][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:21.584][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:21.585][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:21.586][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:21.587][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2024-09-07 16:03:21.587][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:21.588][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:21.589][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:21.590][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-09-07 16:03:21.590][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:21.591][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:21.592][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:21.593][ef$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:03:21.593][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:03:21.594][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:21.595][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:21.596][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:03:21.597][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:03:21.597][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:21.598][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:21.599][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:03:21.600][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:03:21.600][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:21.601][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:21.602][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:03:21.603][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:03:21.603][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:21.604][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:21.605][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:03:21.606][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:03:21.606][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:21.607][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:21.608][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:03:21.609][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:03:21.610][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:21.611][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:21.611][ef$get] Asked field names are: logp.
biodb.TRACE[2024-09-07 16:03:21.612][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-09-07 16:03:21.613][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:21.613][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:21.615][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-09-07 16:03:21.615][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-09-07 16:03:21.616][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:21.617][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:21.618][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-09-07 16:03:21.618][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:21.619][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:21.620][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:21.621][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-09-07 16:03:21.622][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:21.622][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:21.623][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:21.624][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:21.625][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:21.625][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:21.626][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:21.627][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:21.628][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:21.628][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:21.629][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:21.630][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:21.631][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:21.632][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:21.632][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:21.633][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:21.634][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:21.635][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:21.635][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:21.636][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2024-09-07 16:03:21.637][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:21.638][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:21.638][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:21.639][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:21.640][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:21.641][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:21.641][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:21.642][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:21.643][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:21.644][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:21.644][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:21.645][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2024-09-07 16:03:21.646][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:21.647][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:21.647][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:21.648][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:21.649][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:21.650][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:21.651][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:21.651][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:21.652][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:21.653][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:21.654][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:21.654][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2024-09-07 16:03:21.655][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:21.656][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:21.657][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:21.658][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:21.659][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:21.659][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:21.660][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:21.661][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:21.661][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:21.662][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:21.663][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:21.664][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2024-09-07 16:03:21.665][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:21.665][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:21.666][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:21.667][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:21.668][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:21.669][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:21.669][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:21.670][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:21.671][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:21.672][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:21.672][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:21.673][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2024-09-07 16:03:21.674][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:21.675][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:21.675][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:21.676][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:21.677][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:21.677][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:21.678][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:21.679][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:21.680][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:21.681][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:21.681][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:21.682][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:03:21.683][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:03:21.683][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:21.684][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:21.685][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:21.686][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:21.686][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:21.687][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:21.688][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:21.689][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:21.690][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:21.690][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:21.691][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:21.692][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:21.692][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:21.693][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:21.694][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:21.695][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:21.695][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:21.696][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:21.697][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:21.698][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:21.698][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:21.699][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:21.700][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:21.700][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:21.701][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:21.702][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:21.708][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:21.709][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:21.709][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:21.710][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:03:21.711][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:03:21.711][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:03:21.712][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:03:21.716][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:03:21.717][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:03:21.718][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:03:21.718][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:03:21.720][ef$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:21.721][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:21.722][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:21.722][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:21.723][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:21.724][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:21.725][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:21.726][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:21.726][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:21.727][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:21.728][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:21.728][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:21.730][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:21.730][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:21.731][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:21.732][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:21.733][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:21.734][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:21.734][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:21.735][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:21.736][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:21.736][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:21.737][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:21.738][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:21.739][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:21.739][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:21.740][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:21.741][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:21.742][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:21.742][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:21.743][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:21.744][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:21.745][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:21.745][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:21.746][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:21.747][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:21.748][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:21.749][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:21.749][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:21.750][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:21.751][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:21.752][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:21.752][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:21.753][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:21.754][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:21.755][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:21.756][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:21.756][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:21.757][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2024-09-07 16:03:21.758][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:21.758][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:21.759][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:21.760][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-09-07 16:03:21.761][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:21.762][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:21.762][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:21.763][ef$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:03:21.764][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:03:21.765][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:21.765][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:21.766][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:03:21.767][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:03:21.768][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:21.768][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:21.769][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:03:21.770][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:03:21.771][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:21.771][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:21.772][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:03:21.773][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:03:21.774][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:21.775][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:21.775][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:03:21.776][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:03:21.777][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:21.777][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:21.778][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:03:21.779][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:03:21.780][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:21.781][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:21.781][ef$get] Asked field names are: logp.
biodb.TRACE[2024-09-07 16:03:21.782][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-09-07 16:03:21.783][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:21.784][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:21.784][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-09-07 16:03:21.785][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-09-07 16:03:21.786][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:21.787][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:21.787][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-09-07 16:03:21.788][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:21.789][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:21.790][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:21.791][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-09-07 16:03:21.792][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:21.792][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:21.793][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:21.794][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:21.795][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:21.795][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:21.796][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:21.797][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:21.798][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:21.799][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:21.799][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:21.800][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:21.801][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:21.802][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:21.802][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:21.803][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:21.804][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:21.805][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:21.805][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:21.806][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2024-09-07 16:03:21.807][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:21.808][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:21.809][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:21.810][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:21.810][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:21.811][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:21.812][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:21.812][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:21.813][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:21.814][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:21.815][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:21.815][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2024-09-07 16:03:21.816][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:21.817][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:21.818][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:21.818][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:21.819][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:21.820][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:21.821][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:21.822][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:21.822][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:21.823][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:21.824][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:21.825][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2024-09-07 16:03:21.825][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:21.826][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:21.827][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:21.828][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:21.828][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:21.829][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:21.830][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:21.831][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:21.831][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:21.832][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:21.833][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:21.833][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2024-09-07 16:03:21.834][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:21.835][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:21.836][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:21.837][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:21.837][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:21.838][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:21.839][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:21.840][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:21.840][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:21.841][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:21.842][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:21.843][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2024-09-07 16:03:21.844][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:21.844][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:21.845][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:21.846][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:21.847][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:21.847][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:21.848][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:21.849][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:21.850][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:21.850][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:21.851][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:21.852][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:03:21.853][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:03:21.853][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:21.854][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:21.855][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:21.856][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:21.857][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:21.857][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:21.858][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:21.859][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:21.860][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:21.860][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:21.861][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:21.862][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:21.863][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:21.863][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:21.864][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:21.865][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:21.866][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:21.867][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:21.867][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:21.868][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:21.869][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:21.869][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:21.870][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:21.871][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:21.872][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:21.872][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:21.873][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:21.874][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:21.874][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:21.875][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:21.876][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:21.877][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:21.878][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:21.878][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:21.879][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:21.880][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:21.881][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:21.881][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:21.882][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:21.883][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:21.884][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:21.884][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:21.885][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:21.886][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:21.886][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:21.887][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:21.888][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:21.889][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:21.890][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:21.890][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:21.891][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:21.892][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:21.892][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:21.893][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:21.894][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:21.895][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:21.896][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:21.896][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:21.897][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:21.898][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:21.899][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:21.899][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:21.900][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:21.901][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:21.902][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:21.902][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:03:21.903][self$createEntryFromContent] Accession numbers: 171901106, 171901072, 171877309.
biodb.DEBUG[2024-09-07 16:03:21.921][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-09-07 16:03:21.944][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:03:21.944][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:03:21.945][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:03:21.950][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:03:21.950][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:03:21.951][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:03:21.952][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:03:21.952][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:21.953][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:21.954][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:21.955][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:21.955][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:21.956][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:21.957][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:21.958][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:21.958][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-09-07 16:03:21.959][private$selectFields]
biodb.TRACE[2024-09-07 16:03:21.960][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-09-07 16:03:21.960][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-09-07 16:03:21.961][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-09-07 16:03:21.962][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:21.963][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:21.963][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:21.964][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:21.965][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:21.966][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:21.966][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:21.967][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:21.968][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-09-07 16:03:21.968][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-09-07 16:03:21.969][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:21.970][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:21.970][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:21.971][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:21.972][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-09-07 16:03:21.973][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:21.974][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:21.974][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:21.975][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:21.976][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:21.977][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:21.977][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:21.978][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:21.979][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:21.979][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:21.980][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:21.981][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:21.982][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171901106].
biodb.DEBUG[2024-09-07 16:03:21.983][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:03:21.983][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:03:21.984][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:03:21.989][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:03:21.989][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:03:21.990][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:03:21.991][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:03:21.991][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:21.992][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:21.993][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:21.994][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:21.994][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:21.995][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:21.996][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:21.997][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:21.998][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-09-07 16:03:21.998][private$selectFields]
biodb.TRACE[2024-09-07 16:03:21.999][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-09-07 16:03:22.000][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-09-07 16:03:22.001][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-09-07 16:03:22.001][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:22.002][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:22.003][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:22.004][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:22.004][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:22.005][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:22.006][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:22.007][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:22.007][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-09-07 16:03:22.008][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-09-07 16:03:22.009][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:22.009][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:22.010][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:22.011][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:22.012][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-09-07 16:03:22.013][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:22.013][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:22.014][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:22.015][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:22.016][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:22.016][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:22.017][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:22.018][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:22.019][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:22.019][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:22.020][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:22.021][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:22.022][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171901072].
biodb.DEBUG[2024-09-07 16:03:22.023][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:03:22.024][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:03:22.024][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:03:22.028][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:03:22.029][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:03:22.030][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:03:22.031][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:03:22.032][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:22.032][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:22.033][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:22.034][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:22.035][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:22.035][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:22.036][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:22.037][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:22.037][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-09-07 16:03:22.038][private$selectFields]
biodb.TRACE[2024-09-07 16:03:22.039][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-09-07 16:03:22.039][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-09-07 16:03:22.040][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-09-07 16:03:22.041][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:22.042][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:22.043][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:22.043][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:22.044][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:22.045][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:22.046][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:22.047][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:22.047][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-09-07 16:03:22.048][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-09-07 16:03:22.049][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:22.050][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:22.050][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:22.051][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:22.052][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-09-07 16:03:22.052][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:22.053][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:22.054][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:22.055][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:22.055][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:22.056][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:22.057][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:22.058][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:22.059][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:22.059][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:22.060][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:22.061][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:22.062][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171877309].
biodb.DEBUG[2024-09-07 16:03:22.063][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-09-07 16:03:22.063][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2024-09-07 16:03:22.070][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:22.071][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:22.072][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:22.073][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:22.073][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:22.074][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:22.075][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:22.075][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:22.076][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:22.077][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:22.078][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:22.078][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:22.079][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:22.080][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:22.081][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:22.081][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:22.082][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:22.083][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:22.084][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:22.084][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:22.085][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:22.086][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:22.087][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:22.087][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:22.088][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:22.089][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:22.089][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:22.090][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:22.091][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:22.092][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:22.092][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:22.093][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:03:22.132][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:03:22.132][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:03:22.133][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:03:22.137][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:03:22.138][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:03:22.139][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:03:22.140][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:03:22.145][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.11358306:204.13358306[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2024-09-07 16:03:22.147][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-09-07 16:03:22.149][cch$loadFileContent] Trying to load 1 files from cache: [1]: "1279ae7853bbae0b1c59971aee79ce72".
biodb.TRACE[2024-09-07 16:03:22.150][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-09-07 16:03:22.151][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/1279ae7853bbae0b1c59971aee79ce72.content".
biodb.DEBUG[2024-09-07 16:03:22.153][private$loadEntries] Creating entries from ids [3]: "171853852, 171846466, 171834268".
biodb.DEBUG[2024-09-07 16:03:22.153][conn$getEntryContent] Get PubChem Compound entry content(s) for 3 id(s)...
biodb.TRACE[2024-09-07 16:03:22.155][cch$loadFileContent] Trying to load 3 files from cache: [3]: "171853852, 171846466, 171834268".
biodb.TRACE[2024-09-07 16:03:22.156][cch$loadFileContent] file.exist = [3]: "TRUE, TRUE, TRUE".
biodb.TRACE[2024-09-07 16:03:22.159][loadFileContents] Loaded 3 files from cache: [3]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/171853852.xml, /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/171846466.xml, /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/171834268.xml".
biodb.DEBUG[2024-09-07 16:03:22.160][conn$getEntryContent] 3 PubChem Compound entry content(s) loaded from cache.
biodb.DEBUG[2024-09-07 16:03:22.161][self$createEntryFromContent] Creating PubChem Compound entries from 3 content(s).
biodb.DEBUG[2024-09-07 16:03:22.161][self$createEntryFromContent] Parsing 3 PubChem Compound entries.
biodb.DEBUG[2024-09-07 16:03:22.163][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:03:22.163][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:03:22.164][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:03:22.168][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:03:22.169][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:03:22.170][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:03:22.170][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:03:22.172][ef$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:22.178][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:22.179][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:22.180][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:22.181][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:22.182][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:22.182][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:22.183][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:22.184][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:22.185][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:22.185][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:22.186][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:22.187][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:22.188][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:22.188][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:22.189][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:22.190][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:22.191][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:22.191][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:22.192][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:22.193][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:22.194][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:22.194][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:22.195][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:22.196][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:22.197][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:22.197][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:22.198][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:22.199][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:22.200][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:22.201][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:22.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:22.202][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:22.203][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:22.204][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:22.205][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:22.206][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:22.206][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:22.207][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:22.208][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:22.209][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:22.209][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:22.210][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:22.211][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:22.212][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:22.213][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:22.214][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:22.214][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:22.215][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2024-09-07 16:03:22.216][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:22.217][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:22.217][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:22.218][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-09-07 16:03:22.219][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:22.220][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:22.220][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:22.221][ef$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:03:22.222][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:03:22.223][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:22.224][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:22.225][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:03:22.225][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:03:22.226][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:22.227][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:22.228][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:03:22.228][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:03:22.229][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:22.230][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:22.231][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:03:22.231][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:03:22.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:22.233][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:22.234][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:03:22.234][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:03:22.235][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:22.236][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:22.237][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:03:22.237][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:03:22.238][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:22.239][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:22.240][ef$get] Asked field names are: logp.
biodb.TRACE[2024-09-07 16:03:22.241][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-09-07 16:03:22.241][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:22.242][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:22.243][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-09-07 16:03:22.244][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-09-07 16:03:22.244][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:22.245][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:22.246][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-09-07 16:03:22.247][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:22.248][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:22.248][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:22.249][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-09-07 16:03:22.250][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:22.251][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:22.251][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:22.252][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:22.253][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:22.254][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:22.255][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:22.256][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:22.256][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:22.257][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:22.258][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:22.258][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:22.259][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:22.260][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:22.260][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:22.261][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:22.262][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:22.263][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:22.264][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:22.265][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2024-09-07 16:03:22.265][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:22.266][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:22.267][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:22.267][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:22.268][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:22.269][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:22.270][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:22.270][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:22.271][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:22.272][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:22.273][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:22.273][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2024-09-07 16:03:22.274][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:22.275][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:22.276][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:22.276][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:22.277][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:22.278][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:22.279][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:22.279][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:22.280][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:22.281][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:22.281][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:22.282][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2024-09-07 16:03:22.283][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:22.284][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:22.284][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:22.285][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:22.286][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:22.286][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:22.287][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:22.288][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:22.288][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:22.289][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:22.290][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:22.291][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2024-09-07 16:03:22.292][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:22.292][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:22.293][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:22.294][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:22.294][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:22.295][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:22.296][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:22.297][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:22.297][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:22.298][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:22.299][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:22.300][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2024-09-07 16:03:22.300][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:22.301][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:22.302][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:22.303][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:22.303][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:22.304][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:22.305][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:22.306][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:22.306][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:22.307][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:22.308][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:22.309][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:03:22.309][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:03:22.310][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:22.311][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:22.312][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:22.312][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:22.313][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:22.314][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:22.315][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:22.315][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:22.316][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:22.317][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:22.317][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:22.318][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:22.319][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:22.320][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:22.321][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:22.322][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:22.322][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:22.323][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:22.324][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:22.325][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:22.325][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:22.326][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:22.327][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:22.327][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:22.328][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:22.329][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:22.330][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:22.331][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:22.331][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:22.332][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:03:22.333][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:03:22.334][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:03:22.334][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:03:22.339][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:03:22.340][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:03:22.340][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:03:22.341][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:03:22.343][ef$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:22.344][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:22.345][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:22.345][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:22.346][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:22.347][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:22.348][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:22.348][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:22.349][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:22.350][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:22.350][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:22.351][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:22.352][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:22.353][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:22.354][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:22.355][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:22.355][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:22.356][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:22.357][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:22.358][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:22.358][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:22.359][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:22.360][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:22.361][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:22.362][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:22.362][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:22.363][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:22.364][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:22.365][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:22.366][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:22.366][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:22.367][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:22.368][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:22.368][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:22.369][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:22.370][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:22.371][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:22.371][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:22.372][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:22.373][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:22.374][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:22.375][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:22.375][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:22.376][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:22.377][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:22.378][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:22.378][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:22.379][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:22.380][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2024-09-07 16:03:22.381][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:22.381][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:22.382][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:22.383][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-09-07 16:03:22.384][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:22.384][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:22.385][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:22.386][ef$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:03:22.387][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:03:22.388][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:22.388][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:22.389][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:03:22.390][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:03:22.391][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:22.391][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:22.392][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:03:22.393][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:03:22.394][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:22.394][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:22.395][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:03:22.396][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:03:22.397][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:22.398][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:22.398][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:03:22.399][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:03:22.400][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:22.401][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:22.402][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:03:22.402][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:03:22.403][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:22.404][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:22.405][ef$get] Asked field names are: logp.
biodb.TRACE[2024-09-07 16:03:22.406][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-09-07 16:03:22.406][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:22.407][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:22.408][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-09-07 16:03:22.409][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-09-07 16:03:22.410][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:22.410][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:22.411][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-09-07 16:03:22.412][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:22.413][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:22.413][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:22.414][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-09-07 16:03:22.415][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:22.416][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:22.421][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:22.422][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:22.423][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:22.423][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:22.424][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:22.425][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:22.426][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:22.426][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:22.427][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:22.428][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:22.429][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:22.429][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:22.430][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:22.431][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:22.432][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:22.432][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:22.433][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:22.434][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2024-09-07 16:03:22.434][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:22.435][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:22.436][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:22.436][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:22.437][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:22.438][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:22.439][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:22.439][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:22.440][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:22.441][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:22.442][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:22.442][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2024-09-07 16:03:22.443][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:22.444][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:22.444][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:22.445][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:22.446][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:22.446][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:22.447][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:22.448][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:22.449][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:22.449][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:22.450][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:22.451][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2024-09-07 16:03:22.451][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:22.452][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:22.453][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:22.454][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:22.454][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:22.455][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:22.456][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:22.457][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:22.457][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:22.458][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:22.459][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:22.459][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2024-09-07 16:03:22.460][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:22.461][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:22.461][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:22.462][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:22.463][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:22.464][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:22.464][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:22.465][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:22.466][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:22.466][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:22.467][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:22.468][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2024-09-07 16:03:22.469][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:22.469][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:22.470][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:22.471][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:22.471][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:22.472][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:22.473][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:22.474][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:22.474][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:22.475][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:22.476][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:22.477][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:03:22.477][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:03:22.478][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:22.479][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:22.479][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:22.480][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:22.481][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:22.481][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:22.482][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:22.483][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:22.484][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:22.484][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:22.485][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:22.486][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:22.486][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:22.487][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:22.488][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:22.489][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:22.489][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:22.490][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:22.491][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:22.492][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:22.492][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:22.493][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:22.494][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:22.495][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:22.495][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:22.496][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:22.497][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:22.497][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:22.498][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:22.499][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:03:22.500][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:03:22.501][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:03:22.501][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:03:22.506][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:03:22.506][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:03:22.507][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:03:22.508][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:03:22.510][ef$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:22.511][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:22.511][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:22.512][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:22.513][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:22.514][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:22.514][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:22.515][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:22.516][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:22.517][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:22.517][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:22.518][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:22.519][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:22.520][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:22.520][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:22.521][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:22.522][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:22.523][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:22.523][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:22.524][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:22.525][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:22.526][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:22.526][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:22.527][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:22.528][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:22.529][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:22.529][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:22.530][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:22.531][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:22.532][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:22.533][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:22.533][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:22.534][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:22.535][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:22.536][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:22.536][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:22.537][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:22.538][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:22.539][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:22.539][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:22.540][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:22.541][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:22.542][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:22.542][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:22.543][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:22.544][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:22.545][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:22.545][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:22.546][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2024-09-07 16:03:22.547][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:22.548][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:22.548][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:22.549][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-09-07 16:03:22.550][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:22.551][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:22.552][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:22.552][ef$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:03:22.553][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:03:22.554][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:22.555][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:22.556][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:03:22.556][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:03:22.557][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:22.558][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:22.558][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:03:22.559][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:03:22.560][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:22.561][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:22.562][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:03:22.562][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:03:22.563][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:22.564][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:22.565][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:03:22.565][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:03:22.566][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:22.567][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:22.568][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:03:22.569][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:03:22.569][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:22.570][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:22.571][ef$get] Asked field names are: logp.
biodb.TRACE[2024-09-07 16:03:22.571][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-09-07 16:03:22.572][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:22.573][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:22.574][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-09-07 16:03:22.574][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-09-07 16:03:22.575][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:22.576][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:22.577][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-09-07 16:03:22.577][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:22.578][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:22.579][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:22.580][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-09-07 16:03:22.581][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:22.581][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:22.582][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:22.583][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:22.584][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:22.584][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:22.585][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:22.586][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:22.587][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:22.587][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:22.588][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:22.589][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:22.590][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:22.590][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:22.591][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:22.592][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:22.593][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:22.593][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:22.594][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:22.595][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2024-09-07 16:03:22.595][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:22.596][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:22.597][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:22.598][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:22.599][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:22.599][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:22.600][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:22.601][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:22.601][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:22.602][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:22.603][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:22.604][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2024-09-07 16:03:22.604][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:22.605][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:22.606][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:22.606][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:22.607][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:22.608][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:22.608][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:22.609][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:22.610][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:22.611][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:22.611][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:22.612][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2024-09-07 16:03:22.613][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:22.614][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:22.614][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:22.615][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:22.616][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:22.617][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:22.617][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:22.618][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:22.619][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:22.620][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:22.620][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:22.621][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2024-09-07 16:03:22.622][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:22.622][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:22.623][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:22.624][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:22.625][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:22.625][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:22.626][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:22.627][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:22.627][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:22.628][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:22.629][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:22.630][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2024-09-07 16:03:22.630][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:22.631][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:22.632][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:22.633][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:22.633][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:22.634][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:22.635][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:22.636][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:22.636][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:22.637][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:22.638][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:22.639][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:03:22.639][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:03:22.640][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:22.641][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:22.641][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:22.642][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:22.643][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:22.644][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:22.644][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:22.645][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:22.646][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:22.647][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:22.647][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:22.648][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:22.649][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:22.650][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:22.650][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:22.651][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:22.657][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:22.657][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:22.658][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:22.659][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:22.660][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:22.661][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:22.661][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:22.662][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:22.663][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:22.663][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:22.664][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:22.665][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:22.665][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:22.666][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:22.667][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:22.667][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:22.668][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:22.669][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:22.669][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:22.670][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:22.671][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:22.672][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:22.672][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:22.673][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:22.674][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:22.675][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:22.675][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:22.676][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:22.677][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:22.677][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:22.678][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:22.679][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:22.679][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:22.680][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:22.681][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:22.681][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:22.682][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:22.683][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:22.684][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:22.684][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:22.685][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:22.686][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:22.686][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:22.687][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:22.688][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:22.689][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:22.689][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:22.690][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:22.691][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:22.692][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:03:22.692][self$createEntryFromContent] Accession numbers: 171853852, 171846466, 171834268.
biodb.DEBUG[2024-09-07 16:03:22.693][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-09-07 16:03:22.694][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:03:22.695][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:03:22.695][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:03:22.700][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:03:22.700][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:03:22.701][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:03:22.702][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:03:22.703][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:22.703][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:22.704][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:22.705][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:22.705][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:22.706][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:22.707][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:22.707][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:22.708][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-09-07 16:03:22.709][private$selectFields]
biodb.TRACE[2024-09-07 16:03:22.709][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-09-07 16:03:22.710][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-09-07 16:03:22.711][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-09-07 16:03:22.711][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:22.712][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:22.713][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:22.713][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:22.714][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:22.715][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:22.716][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:22.716][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:22.717][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-09-07 16:03:22.718][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-09-07 16:03:22.719][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:22.719][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:22.720][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:22.721][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:22.721][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-09-07 16:03:22.722][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:22.723][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:22.723][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:22.724][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:22.725][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:22.726][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:22.726][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:22.727][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:22.728][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:22.728][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:22.729][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:22.730][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:22.731][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171853852].
biodb.DEBUG[2024-09-07 16:03:22.732][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:03:22.732][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:03:22.733][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:03:22.737][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:03:22.738][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:03:22.739][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:03:22.739][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:03:22.740][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:22.741][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:22.742][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:22.742][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:22.743][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:22.744][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:22.745][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:22.745][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:22.746][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-09-07 16:03:22.747][private$selectFields]
biodb.TRACE[2024-09-07 16:03:22.747][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-09-07 16:03:22.748][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-09-07 16:03:22.749][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-09-07 16:03:22.750][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:22.750][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:22.751][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:22.752][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:22.753][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:22.753][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:22.754][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:22.755][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:22.755][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-09-07 16:03:22.756][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-09-07 16:03:22.757][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:22.758][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:22.758][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:22.759][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:22.760][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-09-07 16:03:22.761][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:22.761][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:22.762][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:22.763][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:22.763][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:22.764][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:22.765][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:22.766][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:22.766][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:22.767][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:22.768][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:22.768][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:22.770][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171846466].
biodb.DEBUG[2024-09-07 16:03:22.770][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:03:22.771][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:03:22.772][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:03:22.776][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:03:22.777][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:03:22.777][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:03:22.778][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:03:22.779][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:22.780][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:22.781][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:22.781][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:22.782][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:22.783][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:22.783][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:22.784][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:22.785][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-09-07 16:03:22.785][private$selectFields]
biodb.TRACE[2024-09-07 16:03:22.786][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-09-07 16:03:22.787][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-09-07 16:03:22.788][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-09-07 16:03:22.788][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:22.789][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:22.790][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:22.791][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:22.791][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:22.792][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:22.793][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:22.793][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:22.794][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-09-07 16:03:22.795][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-09-07 16:03:22.796][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:22.796][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:22.797][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:22.798][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:22.798][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-09-07 16:03:22.799][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:22.800][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:22.801][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:22.801][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:22.802][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:22.803][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:22.804][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:22.804][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:22.805][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:22.806][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:22.806][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:22.807][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:22.808][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171834268].
biodb.DEBUG[2024-09-07 16:03:22.809][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-09-07 16:03:22.810][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-09-07 16:03:22.811][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:03:22.812][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:03:22.813][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:03:22.817][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:03:22.817][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:03:22.818][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:03:22.819][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:03:22.824][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.04897142:226.06897142[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2024-09-07 16:03:22.826][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-09-07 16:03:22.827][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-09-07 16:03:22.828][private$doSendRequestOnce] Sent URL is "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.04897142%3A226.06897142%5BMonoisotopicMass%5D&retmax=3".
biodb.TRACE[2024-09-07 16:03:22.905][doesRCurlRequestUrlExist] According to RCurl, URL https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.04897142%3A226.06897142%5BMonoisotopicMass%5D&retmax=3 does not exist.
biodb.TRACE[2024-09-07 16:03:22.906][getUrlRequestResult] Using base::url() for sending request.
biodb.DEBUG[2024-09-07 16:03:22.907][getUrlRequestResult] URL "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.04897142%3A226.06897142%5BMonoisotopicMass%5D&retmax=3" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
biodb.TRACE[2024-09-07 16:03:22.908][getBaseUrlRequestResult] Using base::url() for sending request (https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.04897142%3A226.06897142%5BMonoisotopicMass%5D&retmax=3).
biodb.DEBUG[2024-09-07 16:03:22.988][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2024-09-07 16:03:22.990][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/6eb047352a5797ace7dc0cd8f5af7cbf.content"
biodb.TRACE[2024-09-07 16:03:22.993][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/6eb047352a5797ace7dc0cd8f5af7cbf.request"
biodb.DEBUG[2024-09-07 16:03:22.994][private$loadEntries] Creating entries from ids [3]: "171920436, 171900686, 171900685".
biodb.DEBUG[2024-09-07 16:03:22.995][conn$getEntryContent] Get PubChem Compound entry content(s) for 3 id(s)...
biodb.TRACE[2024-09-07 16:03:22.996][cch$loadFileContent] Trying to load 3 files from cache: [3]: "171920436, 171900686, 171900685".
biodb.TRACE[2024-09-07 16:03:22.997][cch$loadFileContent] file.exist = [3]: "FALSE, FALSE, FALSE".
biodb.TRACE[2024-09-07 16:03:22.998][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-09-07 16:03:22.999][conn$getEntryContent] 0 PubChem Compound entry content(s) loaded from cache.
biodb.DEBUG[2024-09-07 16:03:22.999][conn$getEntryContent] 3 entry content(s) need to be fetched from PubChem Compound database "https://pubchem.ncbi.nlm.nih.gov/".
biodb.DEBUG[2024-09-07 16:03:23.000][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-09-07 16:03:23.001][conn$getEntryContent] 1 chunk(s) to download.
biodb.INFO [2024-09-07 16:03:23.013][private$retrieveContents] Get entry content(s) for 3 id(s)...
biodb.DEBUG[2024-09-07 16:03:23.015][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/171920436,171900686,171900685/XML".
biodb.DEBUG[2024-09-07 16:03:23.016][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-09-07 16:03:23.017][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-09-07 16:03:23.018][private$doSendRequestOnce] Sent URL is "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/171920436,171900686,171900685/XML".
biodb.TRACE[2024-09-07 16:03:23.136][getRCurlRequestResult] Using RCurl package for sending request (https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/171920436,171900686,171900685/XML).
biodb.TRACE[2024-09-07 16:03:23.371][private$doSaveContentToFile] Saving to cache [3]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/171920436.xml, /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/171900686.xml, /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/171900685.xml"
biodb.DEBUG[2024-09-07 16:03:23.373][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-09-07 16:03:23.374][self$createEntryFromContent] Creating PubChem Compound entries from 3 content(s).
biodb.DEBUG[2024-09-07 16:03:23.375][self$createEntryFromContent] Parsing 3 PubChem Compound entries.
biodb.DEBUG[2024-09-07 16:03:23.376][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:03:23.377][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:03:23.378][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:03:23.382][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:03:23.383][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:03:23.384][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:03:23.384][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:03:23.386][ef$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:23.387][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:23.388][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:23.389][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:23.390][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:23.391][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:23.391][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:23.392][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:23.393][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:23.393][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:23.394][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:23.438][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:23.439][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:23.440][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:23.441][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:23.442][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:23.443][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:23.444][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:23.445][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:23.445][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:23.446][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:23.447][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:23.448][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:23.449][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:23.449][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:23.450][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:23.451][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:23.451][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:23.453][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:23.453][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:23.454][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:23.455][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:23.456][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:23.457][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:23.458][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:23.458][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:23.459][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:23.460][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:23.461][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:23.462][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:23.462][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:23.463][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:23.464][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:23.465][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:23.466][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:23.466][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:23.467][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:23.468][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:23.469][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2024-09-07 16:03:23.470][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:23.471][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:23.471][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:23.472][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-09-07 16:03:23.473][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:23.474][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:23.475][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:23.476][ef$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:03:23.476][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:03:23.477][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:23.478][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:23.479][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:03:23.480][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:03:23.480][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:23.481][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:23.482][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:03:23.483][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:03:23.483][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:23.484][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:23.485][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:03:23.486][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:03:23.487][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:23.487][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:23.488][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:03:23.489][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:03:23.490][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:23.490][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:23.491][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:03:23.492][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:03:23.493][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:23.494][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:23.494][ef$get] Asked field names are: logp.
biodb.TRACE[2024-09-07 16:03:23.495][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-09-07 16:03:23.496][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:23.496][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:23.497][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-09-07 16:03:23.498][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-09-07 16:03:23.499][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:23.499][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:23.500][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-09-07 16:03:23.501][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:23.502][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:23.502][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:23.503][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-09-07 16:03:23.504][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:23.505][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:23.505][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:23.506][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:23.507][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:23.508][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:23.509][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:23.509][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:23.510][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:23.511][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:23.512][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:23.513][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:23.513][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:23.514][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:23.515][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:23.516][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:23.516][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:23.517][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:23.518][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:23.518][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2024-09-07 16:03:23.519][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:23.520][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:23.521][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:23.521][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:23.522][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:23.523][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:23.524][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:23.524][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:23.525][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:23.526][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:23.527][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:23.528][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2024-09-07 16:03:23.528][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:23.529][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:23.530][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:23.531][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:23.531][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:23.532][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:23.533][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:23.534][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:23.534][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:23.535][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:23.536][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:23.537][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2024-09-07 16:03:23.537][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:23.538][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:23.539][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:23.540][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:23.540][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:23.541][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:23.542][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:23.542][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:23.543][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:23.544][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:23.545][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:23.546][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2024-09-07 16:03:23.546][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:23.547][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:23.548][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:23.548][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:23.549][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:23.550][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:23.551][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:23.551][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:23.552][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:23.553][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:23.553][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:23.554][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2024-09-07 16:03:23.555][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:23.556][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:23.557][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:23.558][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:23.559][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:23.559][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:23.560][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:23.561][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:23.562][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:23.563][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:23.563][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:23.564][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:03:23.565][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:03:23.566][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:23.566][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:23.567][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:23.568][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:23.568][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:23.569][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:23.570][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:23.571][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:23.572][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:23.572][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:23.573][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:23.574][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:23.575][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:23.575][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:23.576][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:23.577][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:23.577][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:23.578][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:23.579][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:23.580][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:23.581][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:23.581][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:23.582][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:23.583][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:23.583][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:23.584][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:23.585][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:23.586][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:23.586][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:23.587][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:03:23.588][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:03:23.588][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:03:23.589][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:03:23.594][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:03:23.594][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:03:23.595][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:03:23.596][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:03:23.598][ef$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:23.598][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:23.599][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:23.600][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:23.601][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:23.601][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:23.602][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:23.603][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:23.603][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:23.604][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:23.605][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:23.605][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:23.607][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:23.608][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:23.608][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:23.609][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:23.610][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:23.611][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:23.611][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:23.612][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:23.613][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:23.614][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:23.615][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:23.615][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:23.616][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:23.617][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:23.618][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:23.619][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:23.620][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:23.621][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:23.622][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:23.622][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:23.623][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:23.624][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:23.625][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:23.625][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:23.626][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:23.627][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:23.628][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:23.628][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:23.629][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:23.630][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:23.631][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:23.631][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:23.632][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:23.633][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:23.634][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:23.634][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:23.635][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2024-09-07 16:03:23.636][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:23.637][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:23.638][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:23.639][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-09-07 16:03:23.639][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:23.640][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:23.641][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:23.642][ef$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:03:23.643][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:03:23.643][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:23.644][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:23.645][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:03:23.646][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:03:23.647][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:23.647][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:23.648][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:03:23.649][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:03:23.650][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:23.651][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:23.652][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:03:23.653][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:03:23.653][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:23.654][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:23.655][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:03:23.656][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:03:23.657][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:23.657][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:23.659][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:03:23.659][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:03:23.660][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:23.661][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:23.662][ef$get] Asked field names are: logp.
biodb.TRACE[2024-09-07 16:03:23.663][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-09-07 16:03:23.663][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:23.664][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:23.665][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-09-07 16:03:23.666][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-09-07 16:03:23.666][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:23.667][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:23.668][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-09-07 16:03:23.669][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:23.670][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:23.671][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:23.672][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-09-07 16:03:23.672][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:23.673][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:23.674][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:23.675][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:23.676][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:23.677][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:23.677][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:23.679][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:23.679][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:23.680][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:23.681][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:23.682][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:23.683][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:23.683][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:23.684][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:23.685][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:23.686][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:23.687][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:23.688][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:23.688][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2024-09-07 16:03:23.689][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:23.690][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:23.691][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:23.692][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:23.693][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:23.693][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:23.694][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:23.695][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:23.696][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:23.696][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:23.697][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:23.698][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2024-09-07 16:03:23.699][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:23.699][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:23.705][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:23.706][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:23.707][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:23.708][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:23.708][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:23.709][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:23.710][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:23.711][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:23.711][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:23.712][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2024-09-07 16:03:23.713][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:23.714][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:23.714][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:23.715][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:23.716][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:23.717][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:23.717][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:23.718][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:23.719][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:23.719][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:23.720][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:23.721][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2024-09-07 16:03:23.722][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:23.722][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:23.723][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:23.724][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:23.725][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:23.725][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:23.726][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:23.727][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:23.727][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:23.728][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:23.729][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:23.730][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2024-09-07 16:03:23.730][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:23.731][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:23.732][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:23.733][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:23.733][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:23.734][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:23.735][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:23.736][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:23.736][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:23.737][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:23.738][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:23.739][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:03:23.739][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:03:23.740][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:23.741][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:23.741][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:23.742][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:23.743][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:23.744][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:23.744][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:23.745][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:23.746][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:23.746][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:23.747][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:23.748][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:23.749][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:23.749][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:23.750][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:23.751][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:23.752][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:23.752][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:23.753][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:23.754][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:23.755][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:23.755][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:23.756][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:23.757][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:23.757][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:23.758][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:23.759][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:23.759][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:23.760][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:23.761][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:03:23.762][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:03:23.762][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:03:23.763][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:03:23.767][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:03:23.768][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:03:23.768][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:03:23.769][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:03:23.771][ef$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:23.772][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:23.772][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:23.773][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:23.774][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:23.775][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:23.776][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:23.776][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:23.777][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:23.778][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:23.778][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:23.779][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:23.780][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:23.781][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:23.782][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:23.782][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:23.783][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:23.784][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:23.785][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:23.785][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:23.786][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:23.787][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:23.788][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:23.788][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:23.789][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:23.790][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:23.791][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:23.792][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:23.793][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:23.793][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:23.794][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:23.795][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:23.796][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:23.796][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:23.797][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:23.798][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:23.799][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:23.800][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:23.801][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:23.801][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:23.802][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:23.803][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:23.803][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:23.804][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:23.805][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:23.806][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:23.806][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:23.807][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:23.808][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2024-09-07 16:03:23.809][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:23.809][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:23.810][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:23.811][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-09-07 16:03:23.812][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:23.812][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:23.813][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:23.814][ef$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:03:23.814][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:03:23.815][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:23.816][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:23.817][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:03:23.818][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:03:23.819][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:23.819][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:23.820][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:03:23.821][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:03:23.822][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:23.822][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:23.823][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:03:23.824][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:03:23.825][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:23.825][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:23.826][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:03:23.827][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:03:23.828][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:23.828][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:23.829][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:03:23.830][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:03:23.831][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:23.831][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:23.832][ef$get] Asked field names are: logp.
biodb.TRACE[2024-09-07 16:03:23.833][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-09-07 16:03:23.833][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:23.834][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:23.835][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-09-07 16:03:23.836][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-09-07 16:03:23.836][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:23.837][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:23.838][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-09-07 16:03:23.839][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:23.839][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:23.840][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:23.841][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-09-07 16:03:23.842][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:23.843][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:23.843][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:23.844][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:23.845][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:23.845][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:23.846][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:23.847][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:23.848][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:23.848][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:23.849][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:23.850][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:23.851][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:23.851][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:23.852][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:23.853][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:23.854][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:23.854][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:23.855][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:23.856][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2024-09-07 16:03:23.857][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:23.857][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:23.858][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:23.859][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:23.860][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:23.861][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:23.861][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:23.862][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:23.863][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:23.863][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:23.864][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:23.865][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2024-09-07 16:03:23.866][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:23.866][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:23.867][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:23.868][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:23.869][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:23.869][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:23.870][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:23.871][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:23.871][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:23.872][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:23.873][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:23.874][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2024-09-07 16:03:23.874][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:23.875][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:23.876][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:23.877][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:23.877][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:23.878][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:23.879][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:23.880][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:23.880][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:23.881][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:23.882][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:23.882][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2024-09-07 16:03:23.883][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:23.884][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:23.884][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:23.885][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:23.886][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:23.887][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:23.887][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:23.888][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:23.889][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:23.890][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:23.890][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:23.891][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2024-09-07 16:03:23.892][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:23.892][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:23.893][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:23.894][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:23.895][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:23.896][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:23.896][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:23.897][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:23.898][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:23.898][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:23.899][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:23.900][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:03:23.901][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:03:23.901][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:23.902][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:23.903][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:23.904][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:23.904][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:23.905][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:23.906][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:23.906][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:23.907][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:23.908][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:23.909][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:23.909][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:23.910][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:23.911][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:23.912][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:23.912][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:23.913][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:23.914][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:23.915][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:23.915][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:23.916][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:23.917][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:23.917][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:23.918][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:23.919][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:23.919][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:23.920][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:23.921][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:23.922][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:23.922][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:23.923][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:23.924][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:23.925][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:23.925][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:23.926][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:23.927][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:23.927][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:23.928][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:23.929][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:23.930][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:23.931][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:23.931][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:23.932][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:23.933][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:23.933][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:23.934][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:23.935][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:23.935][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:23.936][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:23.937][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:23.938][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:23.938][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:23.939][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:23.940][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:23.940][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:23.941][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:23.942][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:23.942][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:23.943][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:23.944][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:23.945][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:23.945][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:23.946][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:23.947][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:23.948][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:23.948][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:03:23.949][self$createEntryFromContent] Accession numbers: 171920436, 171900686, 171900685.
biodb.DEBUG[2024-09-07 16:03:23.950][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-09-07 16:03:23.951][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:03:23.952][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:03:23.957][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:03:23.963][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:03:23.963][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:03:23.964][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:03:23.965][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:03:23.965][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:23.966][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:23.967][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:23.968][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:23.968][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:23.969][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:23.970][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:23.971][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:23.971][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-09-07 16:03:23.972][private$selectFields]
biodb.TRACE[2024-09-07 16:03:23.973][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-09-07 16:03:23.974][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-09-07 16:03:23.974][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-09-07 16:03:23.975][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:23.976][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:23.976][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:23.977][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:23.978][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:23.979][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:23.979][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:23.980][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:23.981][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-09-07 16:03:23.981][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-09-07 16:03:23.982][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:23.983][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:23.984][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:23.984][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:23.985][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-09-07 16:03:23.986][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:23.987][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:23.988][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:23.988][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:23.989][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:23.990][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:23.990][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:23.991][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:23.992][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:23.993][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:23.993][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:23.994][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:23.995][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171920436].
biodb.DEBUG[2024-09-07 16:03:23.996][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:03:23.997][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:03:23.998][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:03:24.002][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:03:24.003][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:03:24.003][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:03:24.004][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:03:24.005][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:24.006][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:24.006][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:24.007][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:24.008][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:24.009][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:24.009][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:24.010][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:24.011][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-09-07 16:03:24.012][private$selectFields]
biodb.TRACE[2024-09-07 16:03:24.013][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-09-07 16:03:24.013][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-09-07 16:03:24.014][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-09-07 16:03:24.015][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:24.016][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:24.016][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:24.017][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:24.018][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:24.019][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:24.019][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:24.020][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:24.021][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-09-07 16:03:24.021][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-09-07 16:03:24.022][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:24.023][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:24.023][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:24.024][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:24.025][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-09-07 16:03:24.026][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:24.026][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:24.027][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:24.028][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:24.028][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:24.029][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:24.030][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:24.031][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:24.031][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:24.032][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:24.033][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:24.033][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:24.034][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171900686].
biodb.DEBUG[2024-09-07 16:03:24.035][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:03:24.036][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:03:24.037][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:03:24.041][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:03:24.042][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:03:24.042][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:03:24.043][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:03:24.044][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:24.045][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:24.045][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:24.046][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:24.047][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:24.048][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:24.048][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:24.049][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:24.050][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-09-07 16:03:24.050][private$selectFields]
biodb.TRACE[2024-09-07 16:03:24.051][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-09-07 16:03:24.052][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-09-07 16:03:24.052][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-09-07 16:03:24.053][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:24.054][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:24.055][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:24.055][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:24.056][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:24.057][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:24.058][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:24.058][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:24.059][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-09-07 16:03:24.060][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-09-07 16:03:24.061][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:24.061][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:24.062][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:24.063][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:24.063][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-09-07 16:03:24.064][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:24.065][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:24.066][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:24.066][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:24.067][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:24.068][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:24.068][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:24.069][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:24.070][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:24.071][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:24.071][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:24.072][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:24.073][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171900685].
biodb.DEBUG[2024-09-07 16:03:24.074][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-09-07 16:03:24.075][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2024-09-07 16:03:24.081][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2024-09-07 16:03:24.082][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2024-09-07 16:03:24.083][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:24.084][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:24.084][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2024-09-07 16:03:24.085][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2024-09-07 16:03:24.086][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:24.087][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2024-09-07 16:03:24.090][biodb::testThat]
biodb.INFO [2024-09-07 16:03:24.091][biodb::testThat] Running test function  test_annotateMzValues_ppm_tol  (" ppm tolerance works in annotateMzValues() ").
biodb.INFO [2024-09-07 16:03:24.092][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-09-07 16:03:24.092][biodb::testThat]
biodb.TRACE[2024-09-07 16:03:24.094][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-09-07 16:03:24.095][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-09-07 16:03:24.096][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:24.097][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:24.097][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-09-07 16:03:24.098][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-09-07 16:03:24.099][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:24.100][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:24.101][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:24.101][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:24.102][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:24.103][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:24.103][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:24.104][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:24.105][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:24.106][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:24.107][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:24.108][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:24.108][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:24.109][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:24.110][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:24.110][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:24.111][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:24.112][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:24.113][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:24.113][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:24.114][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:24.115][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:24.116][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:24.117][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:24.117][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:24.118][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:24.119][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:24.120][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:24.120][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:24.121][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:24.122][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:24.123][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:24.124][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:24.124][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:03:24.127][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:03:24.127][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:03:24.128][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:03:24.132][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:03:24.133][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:03:24.133][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:03:24.134][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:03:24.139][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.2369364:204.2430636[MolecularWeight]&retmax=3".
biodb.DEBUG[2024-09-07 16:03:24.141][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-09-07 16:03:24.142][cch$loadFileContent] Trying to load 1 files from cache: [1]: "aa9cb23a1eb4b2596e7c242b1c35f744".
biodb.TRACE[2024-09-07 16:03:24.143][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-09-07 16:03:24.145][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/aa9cb23a1eb4b2596e7c242b1c35f744.content".
biodb.DEBUG[2024-09-07 16:03:24.146][private$loadEntries] Creating entries from ids [3]: "171786885, 171632701, 171615005".
biodb.DEBUG[2024-09-07 16:03:24.147][conn$getEntryContent] Get PubChem Compound entry content(s) for 3 id(s)...
biodb.TRACE[2024-09-07 16:03:24.148][cch$loadFileContent] Trying to load 3 files from cache: [3]: "171786885, 171632701, 171615005".
biodb.TRACE[2024-09-07 16:03:24.149][cch$loadFileContent] file.exist = [3]: "TRUE, TRUE, TRUE".
biodb.TRACE[2024-09-07 16:03:24.151][loadFileContents] Loaded 3 files from cache: [3]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/171786885.xml, /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/171632701.xml, /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/171615005.xml".
biodb.DEBUG[2024-09-07 16:03:24.152][conn$getEntryContent] 3 PubChem Compound entry content(s) loaded from cache.
biodb.DEBUG[2024-09-07 16:03:24.153][self$createEntryFromContent] Creating PubChem Compound entries from 3 content(s).
biodb.DEBUG[2024-09-07 16:03:24.154][self$createEntryFromContent] Parsing 3 PubChem Compound entries.
biodb.DEBUG[2024-09-07 16:03:24.155][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:03:24.156][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:03:24.156][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:03:24.161][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:03:24.161][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:03:24.162][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:03:24.163][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:03:24.165][ef$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:24.166][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:24.167][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:24.167][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:24.168][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:24.169][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:24.170][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:24.170][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:24.171][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:24.172][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:24.173][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:24.174][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:24.175][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:24.176][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:24.176][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:24.177][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:24.178][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:24.179][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:24.179][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:24.180][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:24.181][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:24.182][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:24.183][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:24.183][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:24.184][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:24.185][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:24.186][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:24.186][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:24.187][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:24.188][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:24.189][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:24.190][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:24.190][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:24.191][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:24.192][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:24.193][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:24.193][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:24.194][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:24.195][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:24.196][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:24.196][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:24.197][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:24.198][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:24.198][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:24.199][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:24.200][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:24.201][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:24.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:24.202][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2024-09-07 16:03:24.203][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:24.204][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:24.204][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:24.205][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-09-07 16:03:24.206][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:24.207][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:24.208][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:24.208][ef$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:03:24.209][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:03:24.210][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:24.210][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:24.211][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:03:24.212][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:03:24.213][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:24.213][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:24.214][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:03:24.215][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:03:24.216][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:24.216][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:24.217][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:03:24.218][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:03:24.219][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:24.219][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:24.225][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:03:24.226][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:03:24.227][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:24.228][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:24.229][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:03:24.230][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:03:24.230][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:24.231][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:24.232][ef$get] Asked field names are: logp.
biodb.TRACE[2024-09-07 16:03:24.233][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-09-07 16:03:24.233][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:24.234][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:24.235][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-09-07 16:03:24.236][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-09-07 16:03:24.236][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:24.237][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:24.238][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-09-07 16:03:24.239][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:24.239][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:24.240][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:24.241][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-09-07 16:03:24.242][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:24.243][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:24.244][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:24.244][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:24.245][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:24.246][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:24.247][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:24.248][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:24.249][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:24.250][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:24.250][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:24.251][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:24.252][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:24.253][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:24.253][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:24.254][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:24.255][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:24.256][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:24.257][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:24.257][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2024-09-07 16:03:24.258][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:24.259][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:24.259][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:24.260][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:24.261][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:24.262][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:24.263][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:24.263][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:24.264][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:24.265][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:24.266][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:24.266][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2024-09-07 16:03:24.267][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:24.268][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:24.268][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:24.269][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:24.270][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:24.271][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:24.271][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:24.272][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:24.273][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:24.274][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:24.274][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:24.275][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2024-09-07 16:03:24.276][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:24.277][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:24.277][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:24.278][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:24.279][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:24.280][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:24.280][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:24.281][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:24.282][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:24.282][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:24.283][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:24.284][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2024-09-07 16:03:24.285][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:24.286][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:24.286][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:24.287][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:24.288][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:24.289][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:24.289][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:24.290][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:24.291][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:24.291][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:24.292][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:24.293][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2024-09-07 16:03:24.294][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:24.295][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:24.295][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:24.296][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:24.297][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:24.298][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:24.298][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:24.299][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:24.300][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:24.301][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:24.301][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:24.302][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:03:24.303][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:03:24.304][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:24.304][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:24.305][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:24.306][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:24.307][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:24.307][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:24.308][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:24.309][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:24.310][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:24.311][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:24.311][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:24.312][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:24.313][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:24.313][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:24.314][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:24.315][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:24.315][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:24.316][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:24.317][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:24.318][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:24.318][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:24.319][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:24.320][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:24.321][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:24.322][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:24.322][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:24.323][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:24.324][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:24.325][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:24.325][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:03:24.326][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:03:24.327][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:03:24.327][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:03:24.332][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:03:24.332][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:03:24.333][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:03:24.333][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:03:24.336][ef$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:24.337][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:24.337][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:24.338][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:24.339][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:24.340][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:24.340][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:24.341][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:24.342][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:24.343][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:24.343][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:24.344][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:24.345][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:24.346][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:24.346][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:24.347][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:24.348][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:24.348][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:24.349][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:24.350][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:24.351][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:24.352][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:24.352][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:24.353][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:24.354][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:24.355][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:24.355][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:24.356][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:24.357][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:24.358][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:24.358][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:24.359][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:24.360][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:24.360][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:24.361][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:24.362][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:24.363][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:24.363][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:24.364][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:24.365][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:24.366][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:24.366][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:24.367][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:24.368][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:24.369][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:24.369][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:24.370][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:24.371][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:24.372][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2024-09-07 16:03:24.373][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:24.373][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:24.374][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:24.375][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-09-07 16:03:24.376][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:24.376][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:24.377][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:24.378][ef$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:03:24.378][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:03:24.379][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:24.380][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:24.381][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:03:24.382][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:03:24.382][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:24.383][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:24.384][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:03:24.385][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:03:24.385][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:24.386][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:24.387][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:03:24.388][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:03:24.389][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:24.389][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:24.390][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:03:24.391][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:03:24.392][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:24.392][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:24.393][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:03:24.394][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:03:24.395][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:24.395][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:24.396][ef$get] Asked field names are: logp.
biodb.TRACE[2024-09-07 16:03:24.397][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-09-07 16:03:24.398][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:24.398][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:24.399][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-09-07 16:03:24.400][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-09-07 16:03:24.401][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:24.401][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:24.402][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-09-07 16:03:24.403][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:24.404][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:24.405][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:24.406][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-09-07 16:03:24.406][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:24.407][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:24.408][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:24.409][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:24.409][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:24.410][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:24.411][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:24.412][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:24.412][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:24.413][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:24.414][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:24.414][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:24.415][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:24.416][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:24.417][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:24.418][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:24.419][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:24.419][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:24.420][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:24.421][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2024-09-07 16:03:24.422][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:24.422][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:24.423][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:24.424][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:24.425][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:24.425][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:24.426][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:24.427][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:24.427][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:24.428][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:24.429][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:24.430][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2024-09-07 16:03:24.430][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:24.431][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:24.432][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:24.433][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:24.433][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:24.434][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:24.435][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:24.436][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:24.436][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:24.437][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:24.438][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:24.438][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2024-09-07 16:03:24.439][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:24.440][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:24.441][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:24.441][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:24.442][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:24.443][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:24.443][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:24.444][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:24.445][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:24.446][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:24.446][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:24.447][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2024-09-07 16:03:24.448][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:24.449][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:24.449][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:24.450][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:24.451][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:24.452][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:24.452][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:24.453][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:24.454][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:24.454][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:24.455][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:24.456][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2024-09-07 16:03:24.457][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:24.457][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:24.458][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:24.459][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:24.459][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:24.460][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:24.461][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:24.462][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:24.463][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:24.463][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:24.464][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:24.465][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:03:24.465][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:03:24.466][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:24.467][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:24.468][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:24.468][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:24.469][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:24.470][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:24.470][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:24.471][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:24.472][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:24.473][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:24.473][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:24.474][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:24.475][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:24.475][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:24.481][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:24.482][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:24.483][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:24.484][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:24.485][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:24.486][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:24.486][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:24.487][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:24.488][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:24.488][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:24.489][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:24.490][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:24.491][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:24.491][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:24.492][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:24.493][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:03:24.494][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:03:24.494][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:03:24.495][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:03:24.499][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:03:24.500][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:03:24.501][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:03:24.501][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:03:24.503][ef$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:24.504][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:24.505][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:24.505][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:24.506][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:24.507][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:24.508][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:24.509][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:24.509][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:24.510][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:24.511][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:24.512][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:24.513][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:24.513][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:24.514][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:24.515][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:24.515][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:24.516][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:24.517][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:24.518][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:24.519][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:24.519][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:24.520][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:24.521][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:24.522][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:24.522][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:24.523][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:24.524][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:24.525][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:24.525][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:24.526][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:24.527][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:24.528][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:24.528][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:24.529][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:24.530][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:24.531][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:24.532][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:24.532][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:24.533][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:24.534][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:24.534][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:24.535][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:24.536][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:24.537][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:24.538][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:24.538][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:24.539][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:24.540][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2024-09-07 16:03:24.541][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:24.541][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:24.542][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:24.543][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-09-07 16:03:24.544][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:24.544][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:24.545][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:24.546][ef$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:03:24.546][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:03:24.547][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:24.548][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:24.549][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:03:24.549][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:03:24.550][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:24.551][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:24.552][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:03:24.552][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:03:24.553][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:24.554][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:24.555][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:03:24.556][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:03:24.556][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:24.557][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:24.558][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:03:24.558][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:03:24.559][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:24.560][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:24.561][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:03:24.562][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:03:24.562][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:24.563][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:24.564][ef$get] Asked field names are: logp.
biodb.TRACE[2024-09-07 16:03:24.565][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-09-07 16:03:24.565][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:24.566][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:24.567][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-09-07 16:03:24.568][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-09-07 16:03:24.569][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:24.569][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:24.570][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-09-07 16:03:24.571][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:24.572][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:24.572][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:24.573][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-09-07 16:03:24.574][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:24.575][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:24.575][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:24.576][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:24.577][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:24.578][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:24.578][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:24.579][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:24.580][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:24.581][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:24.581][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:24.582][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:24.583][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:24.584][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:24.585][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:24.585][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:24.586][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:24.587][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:24.588][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:24.588][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2024-09-07 16:03:24.589][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:24.590][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:24.590][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:24.591][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:24.592][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:24.593][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:24.593][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:24.594][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:24.595][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:24.595][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:24.596][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:24.597][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2024-09-07 16:03:24.598][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:24.598][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:24.599][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:24.600][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:24.601][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:24.601][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:24.602][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:24.603][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:24.603][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:24.604][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:24.605][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:24.605][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2024-09-07 16:03:24.606][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:24.607][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:24.608][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:24.608][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:24.609][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:24.610][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:24.611][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:24.611][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:24.612][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:24.613][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:24.614][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:24.614][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2024-09-07 16:03:24.615][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:24.616][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:24.616][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:24.617][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:24.618][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:24.619][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:24.619][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:24.620][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:24.621][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:24.622][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:24.622][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:24.623][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2024-09-07 16:03:24.624][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:24.625][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:24.625][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:24.626][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:24.627][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:24.627][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:24.628][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:24.629][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:24.630][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:24.630][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:24.631][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:24.632][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:03:24.633][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:03:24.633][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:24.634][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:24.635][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:24.636][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:24.637][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:24.637][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:24.638][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:24.639][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:24.639][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:24.640][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:24.641][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:24.642][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:24.642][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:24.643][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:24.644][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:24.645][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:24.645][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:24.646][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:24.647][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:24.647][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:24.648][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:24.649][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:24.650][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:24.651][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:24.651][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:24.652][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:24.653][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:24.653][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:24.654][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:24.655][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:24.656][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:24.656][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:24.657][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:24.658][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:24.658][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:24.659][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:24.660][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:24.661][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:24.661][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:24.662][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:24.663][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:24.663][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:24.664][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:24.665][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:24.666][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:24.667][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:24.667][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:24.668][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:24.669][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:24.670][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:24.670][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:24.671][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:24.672][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:24.672][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:24.673][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:24.674][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:24.675][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:24.675][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:24.676][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:24.677][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:24.678][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:24.678][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:24.679][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:24.680][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:24.681][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:24.681][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:03:24.682][self$createEntryFromContent] Accession numbers: 171786885, 171632701, 171615005.
biodb.DEBUG[2024-09-07 16:03:24.683][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-09-07 16:03:24.684][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:03:24.685][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:03:24.685][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:03:24.689][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:03:24.690][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:03:24.691][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:03:24.691][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:03:24.692][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:24.693][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:24.694][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:24.695][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:24.695][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:24.696][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:24.697][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:24.698][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:24.698][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-09-07 16:03:24.699][private$selectFields]
biodb.TRACE[2024-09-07 16:03:24.700][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-09-07 16:03:24.701][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-09-07 16:03:24.701][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-09-07 16:03:24.702][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:24.703][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:24.704][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:24.704][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:24.705][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:24.706][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:24.707][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:24.707][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:24.708][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-09-07 16:03:24.709][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-09-07 16:03:24.709][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:24.710][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:24.711][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:24.712][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:24.713][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-09-07 16:03:24.714][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:24.714][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:24.715][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:24.716][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:24.716][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:24.717][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:24.718][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:24.719][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:24.719][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:24.720][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:24.721][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:24.722][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:24.723][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171786885].
biodb.DEBUG[2024-09-07 16:03:24.724][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:03:24.724][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:03:24.725][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:03:24.729][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:03:24.730][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:03:24.731][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:03:24.731][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:03:24.732][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:24.733][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:24.739][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:24.740][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:24.741][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:24.742][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:24.743][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:24.743][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:24.744][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-09-07 16:03:24.745][private$selectFields]
biodb.TRACE[2024-09-07 16:03:24.745][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-09-07 16:03:24.746][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-09-07 16:03:24.747][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-09-07 16:03:24.747][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:24.748][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:24.749][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:24.750][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:24.750][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:24.751][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:24.752][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:24.753][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:24.753][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-09-07 16:03:24.754][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-09-07 16:03:24.755][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:24.756][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:24.757][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:24.757][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:24.758][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-09-07 16:03:24.759][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:24.759][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:24.760][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:24.761][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:24.762][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:24.763][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:24.763][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:24.764][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:24.765][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:24.766][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:24.766][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:24.767][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:24.768][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171632701].
biodb.DEBUG[2024-09-07 16:03:24.769][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:03:24.770][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:03:24.770][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:03:24.775][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:03:24.775][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:03:24.776][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:03:24.777][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:03:24.778][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:24.778][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:24.779][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:24.780][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:24.781][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:24.782][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:24.782][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:24.783][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:24.784][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-09-07 16:03:24.784][private$selectFields]
biodb.TRACE[2024-09-07 16:03:24.785][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-09-07 16:03:24.786][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-09-07 16:03:24.787][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-09-07 16:03:24.787][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:24.788][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:24.789][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:24.789][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:24.790][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:24.791][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:24.792][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:24.792][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:24.793][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-09-07 16:03:24.794][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-09-07 16:03:24.795][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:24.795][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:24.796][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:24.797][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:24.797][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-09-07 16:03:24.798][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:24.799][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:24.800][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:24.800][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:24.801][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:24.802][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:24.802][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:24.803][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:24.804][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:24.805][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:24.805][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:24.806][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:24.807][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171615005].
biodb.DEBUG[2024-09-07 16:03:24.808][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-09-07 16:03:24.809][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-09-07 16:03:24.810][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:03:24.811][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:03:24.812][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:03:24.816][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:03:24.816][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:03:24.817][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:03:24.818][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:03:24.823][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18660715:226.19339285[MolecularWeight]&retmax=3".
biodb.DEBUG[2024-09-07 16:03:24.825][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-09-07 16:03:24.826][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-09-07 16:03:24.827][private$doSendRequestOnce] Sent URL is "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18660715%3A226.19339285%5BMolecularWeight%5D&retmax=3".
biodb.TRACE[2024-09-07 16:03:24.918][doesRCurlRequestUrlExist] According to RCurl, URL https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18660715%3A226.19339285%5BMolecularWeight%5D&retmax=3 does not exist.
biodb.TRACE[2024-09-07 16:03:24.919][getUrlRequestResult] Using base::url() for sending request.
biodb.DEBUG[2024-09-07 16:03:24.920][getUrlRequestResult] URL "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18660715%3A226.19339285%5BMolecularWeight%5D&retmax=3" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
biodb.TRACE[2024-09-07 16:03:24.921][getBaseUrlRequestResult] Using base::url() for sending request (https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18660715%3A226.19339285%5BMolecularWeight%5D&retmax=3).
biodb.DEBUG[2024-09-07 16:03:25.009][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2024-09-07 16:03:25.011][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/cdac68f12e8f2043e94276de0cd65925.content"
biodb.TRACE[2024-09-07 16:03:25.014][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/cdac68f12e8f2043e94276de0cd65925.request"
biodb.DEBUG[2024-09-07 16:03:25.016][private$loadEntries] Creating entries from ids [1]: "171868264".
biodb.DEBUG[2024-09-07 16:03:25.016][conn$getEntryContent] Get PubChem Compound entry content(s) for 1 id(s)...
biodb.TRACE[2024-09-07 16:03:25.018][cch$loadFileContent] Trying to load 1 files from cache: [1]: "171868264".
biodb.TRACE[2024-09-07 16:03:25.018][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-09-07 16:03:25.019][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-09-07 16:03:25.020][conn$getEntryContent] 0 PubChem Compound entry content(s) loaded from cache.
biodb.DEBUG[2024-09-07 16:03:25.021][conn$getEntryContent] 1 entry content(s) need to be fetched from PubChem Compound database "https://pubchem.ncbi.nlm.nih.gov/".
biodb.DEBUG[2024-09-07 16:03:25.022][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-09-07 16:03:25.023][conn$getEntryContent] 1 chunk(s) to download.
biodb.INFO [2024-09-07 16:03:25.023][private$retrieveContents] Get entry content(s) for 1 id(s)...
biodb.DEBUG[2024-09-07 16:03:25.025][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/171868264/XML".
biodb.DEBUG[2024-09-07 16:03:25.026][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-09-07 16:03:25.027][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-09-07 16:03:25.028][private$doSendRequestOnce] Sent URL is "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/171868264/XML".
biodb.TRACE[2024-09-07 16:03:25.125][getRCurlRequestResult] Using RCurl package for sending request (https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/171868264/XML).
biodb.TRACE[2024-09-07 16:03:25.296][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/171868264.xml"
biodb.DEBUG[2024-09-07 16:03:25.298][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-09-07 16:03:25.299][self$createEntryFromContent] Creating PubChem Compound entries from 1 content(s).
biodb.DEBUG[2024-09-07 16:03:25.299][self$createEntryFromContent] Parsing 1 PubChem Compound entries.
biodb.DEBUG[2024-09-07 16:03:25.301][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:03:25.301][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:03:25.302][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:03:25.306][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:03:25.307][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:03:25.308][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:03:25.308][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:03:25.311][ef$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:25.311][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:25.312][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:25.313][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:25.314][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:25.315][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:25.315][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:25.316][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:25.317][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:25.318][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:25.318][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:25.319][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:25.320][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:25.321][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:25.322][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:25.322][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:25.323][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:25.324][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:25.324][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:25.325][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:25.326][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:25.327][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:25.328][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:25.328][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:25.329][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:25.330][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:25.331][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:25.331][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:25.332][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:25.333][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:25.334][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:25.335][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:25.335][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:25.336][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:25.337][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:25.338][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:25.338][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:25.339][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:25.340][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:25.341][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:25.342][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:25.342][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:25.343][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:25.344][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:25.345][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:25.345][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:25.346][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:25.347][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:25.348][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2024-09-07 16:03:25.348][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:25.349][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:25.350][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:25.351][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-09-07 16:03:25.351][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:25.352][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:25.353][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:25.354][ef$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:03:25.354][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:03:25.355][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:25.356][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:25.357][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:03:25.358][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:03:25.358][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:25.359][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:25.360][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:03:25.360][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:03:25.361][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:25.362][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:25.363][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:03:25.364][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:03:25.365][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:25.365][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:25.366][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:03:25.367][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:03:25.368][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:25.368][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:25.369][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:03:25.370][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:03:25.371][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:25.372][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:25.373][ef$get] Asked field names are: logp.
biodb.TRACE[2024-09-07 16:03:25.373][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-09-07 16:03:25.374][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:25.375][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:25.376][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-09-07 16:03:25.376][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-09-07 16:03:25.377][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:25.378][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:25.378][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-09-07 16:03:25.379][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:25.380][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:25.381][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:25.382][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-09-07 16:03:25.382][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:25.383][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:25.384][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:25.384][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:25.385][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:25.386][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:25.387][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:25.387][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:25.388][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:25.389][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:25.390][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:25.390][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:25.391][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:25.392][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:25.393][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:25.394][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:25.394][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:25.395][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:25.396][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:25.396][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2024-09-07 16:03:25.397][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:25.398][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:25.399][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:25.400][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:25.400][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:25.401][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:25.402][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:25.402][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:25.403][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:25.404][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:25.405][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:25.405][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2024-09-07 16:03:25.406][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:25.407][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:25.407][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:25.408][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:25.409][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:25.410][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:25.410][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:25.411][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:25.412][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:25.413][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:25.413][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:25.414][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2024-09-07 16:03:25.415][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:25.415][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:25.416][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:25.417][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:25.418][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:25.419][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:25.419][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:25.420][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:25.421][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:25.422][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:25.422][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:25.423][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2024-09-07 16:03:25.424][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:25.424][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:25.425][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:25.426][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:25.427][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:25.428][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:25.428][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:25.429][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:25.430][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:25.431][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:25.431][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:25.432][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2024-09-07 16:03:25.433][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:25.433][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:25.434][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:25.435][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:25.436][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:25.436][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:25.445][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:25.446][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:25.447][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:25.448][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:25.449][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:25.450][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:03:25.451][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:03:25.451][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:25.452][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:25.453][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:25.454][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:25.454][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:25.455][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:25.456][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:25.456][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:25.457][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:25.458][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:25.459][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:25.460][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:25.460][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:25.461][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:25.462][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:25.463][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:25.463][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:25.464][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:25.465][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:25.466][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:25.466][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:25.467][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:25.468][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:25.468][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:25.469][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:25.470][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:25.471][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:25.471][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:25.472][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:25.473][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:25.474][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:25.474][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:25.475][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:25.476][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:25.477][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:25.478][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:25.478][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:25.479][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:25.480][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:25.480][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:25.481][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:25.482][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:03:25.482][self$createEntryFromContent] Accession numbers: 171868264.
biodb.DEBUG[2024-09-07 16:03:25.483][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-09-07 16:03:25.484][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:03:25.485][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:03:25.486][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:03:25.491][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:03:25.491][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:03:25.492][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:03:25.492][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:03:25.518][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:25.519][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:25.520][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:25.520][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:25.521][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:25.522][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:25.523][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:25.523][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:25.539][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-09-07 16:03:25.539][private$selectFields]
biodb.TRACE[2024-09-07 16:03:25.540][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-09-07 16:03:25.541][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-09-07 16:03:25.541][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-09-07 16:03:25.542][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:25.543][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:25.544][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:25.544][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:25.545][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:25.546][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:25.546][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:25.547][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:25.548][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-09-07 16:03:25.555][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-09-07 16:03:25.556][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:25.557][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:25.557][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:25.558][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:25.559][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-09-07 16:03:25.559][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:25.560][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:25.561][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:25.562][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:25.563][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:25.563][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:25.564][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:25.565][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:25.565][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:25.566][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:25.567][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:25.568][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:25.569][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171901106].
biodb.DEBUG[2024-09-07 16:03:25.570][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:03:25.570][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:03:25.571][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:03:25.575][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:03:25.576][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:03:25.576][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:03:25.577][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:03:25.578][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:25.579][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:25.580][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:25.580][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:25.581][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:25.582][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:25.583][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:25.583][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:25.584][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-09-07 16:03:25.585][private$selectFields]
biodb.TRACE[2024-09-07 16:03:25.585][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-09-07 16:03:25.586][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-09-07 16:03:25.587][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-09-07 16:03:25.587][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:25.588][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:25.589][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:25.590][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:25.590][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:25.591][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:25.592][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:25.592][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:25.593][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-09-07 16:03:25.594][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-09-07 16:03:25.595][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:25.595][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:25.596][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:25.597][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:25.598][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-09-07 16:03:25.598][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:25.599][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:25.600][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:25.600][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:25.601][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:25.602][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:25.603][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:25.603][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:25.604][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:25.605][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:25.605][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:25.606][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:25.607][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171877309].
biodb.DEBUG[2024-09-07 16:03:25.608][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:03:25.609][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:03:25.609][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:03:25.614][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:03:25.614][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:03:25.615][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:03:25.616][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:03:25.617][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:25.618][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:25.618][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:25.619][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:25.620][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:25.620][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:25.621][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:25.622][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:25.623][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-09-07 16:03:25.623][private$selectFields]
biodb.TRACE[2024-09-07 16:03:25.624][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-09-07 16:03:25.625][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-09-07 16:03:25.626][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-09-07 16:03:25.626][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:25.627][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:25.628][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:25.628][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:25.629][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:25.630][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:25.631][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:25.631][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:25.632][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-09-07 16:03:25.633][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-09-07 16:03:25.633][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:25.634][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:25.635][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:25.636][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:25.636][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-09-07 16:03:25.637][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:25.638][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:25.638][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:25.639][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:25.640][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:25.641][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:25.641][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:25.642][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:25.643][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:25.644][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:25.644][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:25.645][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:25.646][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171868264].
biodb.DEBUG[2024-09-07 16:03:25.647][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-09-07 16:03:25.648][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2024-09-07 16:03:25.655][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:25.656][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:25.656][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:25.657][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:25.658][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:25.659][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:25.659][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:25.660][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:25.661][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:25.661][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:25.662][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:25.663][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:25.664][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:25.664][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:25.665][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:25.666][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:25.667][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:25.667][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:25.668][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:25.669][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:25.669][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:25.670][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:25.671][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:25.672][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:25.672][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:25.673][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:25.674][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:25.675][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:25.676][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:25.676][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:25.677][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:25.678][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:03:25.685][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:03:25.686][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:03:25.687][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:03:25.692][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:03:25.692][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:03:25.693][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:03:25.694][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:03:25.699][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.120521206254:204.126644913746[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2024-09-07 16:03:25.702][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-09-07 16:03:25.703][cch$loadFileContent] Trying to load 1 files from cache: [1]: "3123cd8cb57ce8b130489fc490c416f0".
biodb.TRACE[2024-09-07 16:03:25.703][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-09-07 16:03:25.705][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/3123cd8cb57ce8b130489fc490c416f0.content".
biodb.DEBUG[2024-09-07 16:03:25.706][private$loadEntries] Creating entries from ids [1]: "171828390".
biodb.DEBUG[2024-09-07 16:03:25.707][conn$getEntryContent] Get PubChem Compound entry content(s) for 1 id(s)...
biodb.TRACE[2024-09-07 16:03:25.708][cch$loadFileContent] Trying to load 1 files from cache: [1]: "171828390".
biodb.TRACE[2024-09-07 16:03:25.709][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-09-07 16:03:25.711][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/171828390.xml".
biodb.DEBUG[2024-09-07 16:03:25.712][conn$getEntryContent] 1 PubChem Compound entry content(s) loaded from cache.
biodb.DEBUG[2024-09-07 16:03:25.712][self$createEntryFromContent] Creating PubChem Compound entries from 1 content(s).
biodb.DEBUG[2024-09-07 16:03:25.713][self$createEntryFromContent] Parsing 1 PubChem Compound entries.
biodb.DEBUG[2024-09-07 16:03:25.714][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:03:25.715][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:03:25.716][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:03:25.720][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:03:25.721][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:03:25.721][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:03:25.722][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:03:25.724][ef$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:25.725][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:25.726][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:25.726][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:25.727][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:25.728][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:25.729][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:25.730][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:25.731][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:25.731][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:25.732][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:25.733][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:25.734][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:25.735][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:25.735][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:25.736][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:25.737][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:25.738][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:25.738][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:25.739][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:25.740][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:25.741][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:25.741][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:25.742][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:25.743][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:25.744][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:25.744][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:25.745][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:25.746][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:25.747][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:25.748][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:25.748][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:25.749][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:25.750][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:25.750][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:25.751][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:25.752][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:25.753][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:25.753][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:25.754][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:25.755][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:25.756][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:25.756][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:25.757][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:25.758][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:25.759][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:25.760][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:25.760][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:25.761][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2024-09-07 16:03:25.762][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:25.763][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:25.763][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:25.764][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-09-07 16:03:25.765][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:25.766][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:25.766][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:25.767][ef$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:03:25.768][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:03:25.768][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:25.769][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:25.770][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:03:25.771][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:03:25.772][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:25.772][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:25.773][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:03:25.774][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:03:25.775][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:25.775][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:25.776][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:03:25.777][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:03:25.778][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:25.779][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:25.779][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:03:25.780][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:03:25.781][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:25.781][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:25.782][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:03:25.783][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:03:25.784][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:25.785][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:25.786][ef$get] Asked field names are: logp.
biodb.TRACE[2024-09-07 16:03:25.786][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-09-07 16:03:25.787][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:25.788][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:25.789][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-09-07 16:03:25.789][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-09-07 16:03:25.790][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:25.791][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:25.792][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-09-07 16:03:25.792][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:25.793][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:25.794][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:25.795][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-09-07 16:03:25.796][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:25.796][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:25.797][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:25.798][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:25.799][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:25.799][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:25.800][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:25.801][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:25.802][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:25.803][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:25.803][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:25.804][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:25.806][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:25.807][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:25.828][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:25.829][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:25.930][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:25.931][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:25.932][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:25.933][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2024-09-07 16:03:25.934][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:25.934][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:25.935][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:25.936][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:25.937][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:25.937][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:25.938][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:25.939][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:25.940][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:25.940][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:25.941][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:25.942][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2024-09-07 16:03:25.943][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:25.943][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:25.944][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:25.945][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:25.946][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:25.947][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:25.947][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:25.948][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:25.949][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:25.950][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:25.951][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:25.952][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2024-09-07 16:03:25.954][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:25.955][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:25.957][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:25.958][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:25.958][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:25.959][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:25.960][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:25.960][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:25.961][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:25.962][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:25.963][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:25.963][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2024-09-07 16:03:25.964][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:25.965][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:25.966][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:25.966][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:25.967][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:25.968][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:25.969][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:25.969][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:25.970][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:25.971][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:25.972][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:25.972][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2024-09-07 16:03:25.973][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:25.974][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:25.975][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:25.975][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:25.976][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:25.977][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:25.978][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:25.978][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:25.979][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:25.980][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:25.980][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:25.981][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:03:25.982][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:03:25.983][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:25.983][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:25.984][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:25.985][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:25.986][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:25.987][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:25.987][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:25.988][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:25.989][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:25.990][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:25.990][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:25.991][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:25.992][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:25.992][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:25.993][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:25.994][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:25.995][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:25.995][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:25.996][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:25.997][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:25.998][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:25.999][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:25.999][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:26.000][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:26.001][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:26.002][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:26.003][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:26.003][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:26.004][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:26.005][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:26.006][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:26.006][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:26.007][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:26.008][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:26.009][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:26.009][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:26.010][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:26.011][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:26.012][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:26.013][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:26.013][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:26.014][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:03:26.015][self$createEntryFromContent] Accession numbers: 171828390.
biodb.DEBUG[2024-09-07 16:03:26.016][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-09-07 16:03:26.017][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:03:26.018][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:03:26.018][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:03:26.023][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:03:26.023][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:03:26.024][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:03:26.025][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:03:26.026][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:26.027][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:26.027][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:26.028][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:26.029][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:26.029][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:26.030][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:26.031][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:26.032][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-09-07 16:03:26.032][private$selectFields]
biodb.TRACE[2024-09-07 16:03:26.033][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-09-07 16:03:26.034][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-09-07 16:03:26.034][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-09-07 16:03:26.035][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:26.036][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:26.037][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:26.037][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:26.038][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:26.039][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:26.040][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:26.040][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:26.041][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-09-07 16:03:26.042][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-09-07 16:03:26.042][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:26.043][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:26.044][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:26.045][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:26.045][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-09-07 16:03:26.046][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:26.047][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:26.048][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:26.049][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:26.049][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:26.050][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:26.051][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:26.052][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:26.052][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:26.053][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:26.054][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:26.054][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:26.055][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171846466].
biodb.DEBUG[2024-09-07 16:03:26.056][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:03:26.057][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:03:26.058][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:03:26.062][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:03:26.063][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:03:26.063][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:03:26.064][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:03:26.065][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:26.066][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:26.066][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:26.067][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:26.068][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:26.069][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:26.069][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:26.075][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:26.076][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-09-07 16:03:26.077][private$selectFields]
biodb.TRACE[2024-09-07 16:03:26.078][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-09-07 16:03:26.079][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-09-07 16:03:26.080][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-09-07 16:03:26.080][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:26.081][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:26.082][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:26.083][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:26.083][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:26.084][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:26.085][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:26.085][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:26.086][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-09-07 16:03:26.087][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-09-07 16:03:26.088][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:26.089][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:26.089][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:26.090][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:26.091][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-09-07 16:03:26.092][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:26.092][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:26.093][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:26.094][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:26.095][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:26.095][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:26.096][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:26.097][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:26.098][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:26.098][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:26.099][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:26.100][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:26.101][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171834268].
biodb.DEBUG[2024-09-07 16:03:26.102][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:03:26.102][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:03:26.103][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:03:26.108][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:03:26.108][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:03:26.109][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:03:26.109][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:03:26.110][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:26.111][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:26.112][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:26.113][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:26.113][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:26.114][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:26.115][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:26.115][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:26.116][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-09-07 16:03:26.117][private$selectFields]
biodb.TRACE[2024-09-07 16:03:26.118][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-09-07 16:03:26.119][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-09-07 16:03:26.119][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-09-07 16:03:26.120][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:26.121][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:26.121][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:26.122][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:26.123][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:26.124][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:26.124][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:26.125][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:26.126][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-09-07 16:03:26.126][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-09-07 16:03:26.127][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:26.128][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:26.129][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:26.129][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:26.130][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-09-07 16:03:26.131][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:26.132][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:26.132][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:26.133][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:26.134][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:26.134][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:26.135][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:26.136][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:26.137][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:26.137][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:26.138][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:26.139][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:26.140][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171828390].
biodb.DEBUG[2024-09-07 16:03:26.140][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-09-07 16:03:26.141][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-09-07 16:03:26.142][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:03:26.143][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:03:26.144][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:03:26.148][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:03:26.149][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:03:26.150][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:03:26.150][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:03:26.155][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.055580535429:226.062362304571[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2024-09-07 16:03:26.158][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-09-07 16:03:26.159][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-09-07 16:03:26.160][private$doSendRequestOnce] Sent URL is "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.055580535429%3A226.062362304571%5BMonoisotopicMass%5D&retmax=3".
biodb.TRACE[2024-09-07 16:03:26.269][doesRCurlRequestUrlExist] According to RCurl, URL https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.055580535429%3A226.062362304571%5BMonoisotopicMass%5D&retmax=3 does not exist.
biodb.TRACE[2024-09-07 16:03:26.269][getUrlRequestResult] Using base::url() for sending request.
biodb.DEBUG[2024-09-07 16:03:26.271][getUrlRequestResult] URL "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.055580535429%3A226.062362304571%5BMonoisotopicMass%5D&retmax=3" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
biodb.TRACE[2024-09-07 16:03:26.272][getBaseUrlRequestResult] Using base::url() for sending request (https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.055580535429%3A226.062362304571%5BMonoisotopicMass%5D&retmax=3).
biodb.DEBUG[2024-09-07 16:03:26.383][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2024-09-07 16:03:26.385][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/7556db59d44473be447d2dcbbebfba9b.content"
biodb.TRACE[2024-09-07 16:03:26.388][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/7556db59d44473be447d2dcbbebfba9b.request"
biodb.DEBUG[2024-09-07 16:03:26.390][private$loadEntries] Creating entries from ids [2]: "171868263, 171868262".
biodb.DEBUG[2024-09-07 16:03:26.390][conn$getEntryContent] Get PubChem Compound entry content(s) for 2 id(s)...
biodb.TRACE[2024-09-07 16:03:26.391][cch$loadFileContent] Trying to load 2 files from cache: [2]: "171868263, 171868262".
biodb.TRACE[2024-09-07 16:03:26.392][cch$loadFileContent] file.exist = [2]: "FALSE, FALSE".
biodb.TRACE[2024-09-07 16:03:26.393][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-09-07 16:03:26.394][conn$getEntryContent] 0 PubChem Compound entry content(s) loaded from cache.
biodb.DEBUG[2024-09-07 16:03:26.395][conn$getEntryContent] 2 entry content(s) need to be fetched from PubChem Compound database "https://pubchem.ncbi.nlm.nih.gov/".
biodb.DEBUG[2024-09-07 16:03:26.396][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-09-07 16:03:26.396][conn$getEntryContent] 1 chunk(s) to download.
biodb.INFO [2024-09-07 16:03:26.397][private$retrieveContents] Get entry content(s) for 2 id(s)...
biodb.DEBUG[2024-09-07 16:03:26.399][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/171868263,171868262/XML".
biodb.DEBUG[2024-09-07 16:03:26.400][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-09-07 16:03:26.401][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-09-07 16:03:26.402][private$doSendRequestOnce] Sent URL is "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/171868263,171868262/XML".
biodb.TRACE[2024-09-07 16:03:26.512][getRCurlRequestResult] Using RCurl package for sending request (https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/171868263,171868262/XML).
biodb.TRACE[2024-09-07 16:03:26.687][private$doSaveContentToFile] Saving to cache [2]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/171868263.xml, /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/171868262.xml"
biodb.DEBUG[2024-09-07 16:03:26.689][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-09-07 16:03:26.690][self$createEntryFromContent] Creating PubChem Compound entries from 2 content(s).
biodb.DEBUG[2024-09-07 16:03:26.691][self$createEntryFromContent] Parsing 2 PubChem Compound entries.
biodb.DEBUG[2024-09-07 16:03:26.692][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:03:26.693][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:03:26.694][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:03:26.698][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:03:26.699][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:03:26.699][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:03:26.700][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:03:26.702][ef$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:26.703][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:26.704][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:26.704][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:26.705][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:26.706][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:26.707][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:26.708][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:26.708][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:26.709][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:26.710][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:26.710][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:26.711][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:26.712][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:26.713][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:26.714][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:26.714][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:26.715][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:26.716][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:26.717][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:26.718][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:26.719][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:26.719][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:26.720][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:26.721][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:26.721][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:26.722][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:26.723][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:26.724][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:26.724][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:26.725][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:26.726][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:26.727][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:26.727][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:26.728][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:26.729][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:26.730][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:26.731][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:26.731][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:26.732][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:26.733][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:26.733][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:26.734][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:26.735][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:26.736][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:26.736][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:26.737][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:26.738][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:26.739][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2024-09-07 16:03:26.739][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:26.740][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:26.741][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:26.742][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-09-07 16:03:26.743][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:26.744][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:26.744][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:26.745][ef$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:03:26.746][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:03:26.746][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:26.747][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:26.748][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:03:26.749][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:03:26.750][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:26.750][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:26.751][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:03:26.752][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:03:26.753][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:26.753][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:26.754][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:03:26.755][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:03:26.756][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:26.757][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:26.758][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:03:26.758][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:03:26.759][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:26.760][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:26.761][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:03:26.761][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:03:26.762][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:26.763][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:26.764][ef$get] Asked field names are: logp.
biodb.TRACE[2024-09-07 16:03:26.764][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-09-07 16:03:26.765][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:26.766][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:26.767][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-09-07 16:03:26.768][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-09-07 16:03:26.768][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:26.769][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:26.770][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-09-07 16:03:26.771][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:26.772][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:26.772][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:26.773][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-09-07 16:03:26.774][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:26.775][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:26.776][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:26.776][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:26.777][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:26.778][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:26.779][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:26.779][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:26.780][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:26.781][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:26.782][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:26.782][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:26.783][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:26.784][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:26.784][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:26.785][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:26.786][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:26.787][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:26.788][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:26.789][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2024-09-07 16:03:26.790][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:26.790][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:26.791][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:26.792][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:26.793][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:26.793][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:26.794][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:26.795][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:26.796][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:26.796][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:26.797][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:26.798][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2024-09-07 16:03:26.799][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:26.800][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:26.800][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:26.801][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:26.802][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:26.803][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:26.804][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:26.804][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:26.805][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:26.806][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:26.807][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:26.807][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2024-09-07 16:03:26.808][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:26.809][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:26.810][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:26.810][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:26.811][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:26.812][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:26.813][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:26.813][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:26.814][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:26.815][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:26.816][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:26.816][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2024-09-07 16:03:26.817][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:26.818][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:26.818][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:26.819][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:26.820][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:26.821][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:26.821][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:26.822][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:26.823][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:26.824][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:26.824][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:26.825][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2024-09-07 16:03:26.826][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:26.827][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:26.827][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:26.828][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:26.829][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:26.830][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:26.830][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:26.831][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:26.832][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:26.833][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:26.838][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:26.843][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:03:26.844][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:03:26.845][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:26.846][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:26.847][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:26.848][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:26.849][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:26.849][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:26.850][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:26.851][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:26.852][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:26.852][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:26.853][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:26.854][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:26.855][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:26.855][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:26.856][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:26.857][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:26.858][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:26.858][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:26.859][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:26.860][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:26.861][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:26.862][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:26.862][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:26.863][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:26.864][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:26.865][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:26.866][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:26.866][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:26.867][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:26.868][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:03:26.869][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:03:26.869][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:03:26.870][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:03:26.875][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:03:26.875][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:03:26.876][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:03:26.877][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:03:26.879][ef$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:26.880][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:26.881][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:26.882][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:26.883][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:26.884][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:26.884][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:26.885][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:26.886][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:26.887][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:26.887][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:26.888][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:26.889][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:26.890][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:26.891][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:26.892][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:26.892][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:26.893][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:26.894][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:26.895][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:26.896][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:26.897][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:26.897][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:26.898][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:26.899][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:26.900][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:26.901][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:26.901][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:26.902][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:26.903][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:26.904][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:26.905][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:26.905][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:26.906][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:26.907][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:26.908][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:26.909][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:26.910][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:26.910][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:26.911][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:26.912][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:26.913][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:26.913][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:26.914][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:26.915][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:26.916][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:26.917][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:26.917][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:26.918][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2024-09-07 16:03:26.919][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:26.920][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:26.921][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:26.922][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-09-07 16:03:26.923][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:26.923][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:26.924][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:26.925][ef$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:03:26.926][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:03:26.927][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:26.927][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:26.928][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:03:26.929][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:03:26.930][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:26.931][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:26.932][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:03:26.932][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:03:26.933][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:26.934][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:26.935][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:03:26.936][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:03:26.936][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:26.937][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:26.938][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:03:26.939][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:03:26.940][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:26.940][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:26.941][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:03:26.942][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:03:26.943][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:26.944][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:26.945][ef$get] Asked field names are: logp.
biodb.TRACE[2024-09-07 16:03:26.946][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-09-07 16:03:26.946][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:26.947][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:26.948][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-09-07 16:03:26.949][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-09-07 16:03:26.950][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:26.951][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:26.951][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-09-07 16:03:26.952][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:26.953][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:26.954][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:26.955][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-09-07 16:03:26.956][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:26.956][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:26.957][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:26.958][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:26.959][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:26.960][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:26.960][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:26.961][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:26.962][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:26.963][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:26.964][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:26.964][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:26.965][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:26.966][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:26.967][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:26.968][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:26.968][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:26.969][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:26.970][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:26.971][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2024-09-07 16:03:26.972][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:26.973][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:26.973][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:26.974][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:26.975][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:26.976][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:26.976][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:26.977][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:26.978][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:26.979][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:26.980][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:26.980][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2024-09-07 16:03:26.981][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:26.982][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:26.983][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:26.983][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:26.984][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:26.985][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:26.986][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:26.987][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:26.987][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:26.988][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:26.989][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:26.990][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2024-09-07 16:03:26.991][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:26.992][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:26.992][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:26.993][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:26.994][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:26.995][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:26.995][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:26.996][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:26.997][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:26.998][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:26.998][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:26.999][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2024-09-07 16:03:27.000][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:27.001][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:27.001][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:27.002][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:27.003][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:27.004][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:27.005][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:27.005][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:27.006][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:27.007][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:27.008][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:27.009][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2024-09-07 16:03:27.009][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:27.010][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:27.011][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:27.012][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:27.012][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:27.013][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:27.014][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:27.015][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:27.015][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:27.016][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:27.017][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:27.018][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:03:27.019][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:03:27.019][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:27.020][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:27.021][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:27.022][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:27.023][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:27.023][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:27.024][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:27.025][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:27.026][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:27.026][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:27.027][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:27.028][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:27.029][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:27.030][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:27.030][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:27.031][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:27.032][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:27.033][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:27.034][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:27.034][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:27.035][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:27.036][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:27.037][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:27.038][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:27.038][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:27.039][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:27.040][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:27.041][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:27.041][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:27.042][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:27.043][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:27.044][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:27.045][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:27.046][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:27.046][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:27.047][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:27.048][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:27.049][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:27.049][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:27.050][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:27.051][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:27.052][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:27.053][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:27.054][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:27.054][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:27.055][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:27.056][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:27.057][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:27.057][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:27.058][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:27.059][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:27.060][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:27.061][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:27.061][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:03:27.062][self$createEntryFromContent] Accession numbers: 171868263, 171868262.
biodb.DEBUG[2024-09-07 16:03:27.063][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-09-07 16:03:27.064][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:03:27.065][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:03:27.066][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:03:27.070][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:03:27.071][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:03:27.071][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:03:27.072][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:03:27.073][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:27.074][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:27.075][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:27.075][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:27.076][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:27.077][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:27.078][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:27.079][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:27.080][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-09-07 16:03:27.080][private$selectFields]
biodb.TRACE[2024-09-07 16:03:27.081][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-09-07 16:03:27.082][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-09-07 16:03:27.083][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-09-07 16:03:27.083][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:27.084][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:27.085][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:27.086][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:27.086][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:27.087][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:27.088][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:27.089][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:27.090][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-09-07 16:03:27.090][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-09-07 16:03:27.091][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:27.092][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:27.093][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:27.094][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:27.094][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-09-07 16:03:27.095][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:27.096][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:27.097][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:27.097][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:27.098][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:27.099][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:27.100][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:27.101][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:27.101][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:27.102][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:27.103][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:27.104][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:27.105][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171868264].
biodb.DEBUG[2024-09-07 16:03:27.106][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:03:27.106][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:03:27.107][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:03:27.118][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:03:27.119][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:03:27.119][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:03:27.120][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:03:27.121][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:27.122][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:27.123][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:27.124][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:27.124][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:27.125][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:27.126][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:27.127][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:27.127][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-09-07 16:03:27.128][private$selectFields]
biodb.TRACE[2024-09-07 16:03:27.129][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-09-07 16:03:27.130][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-09-07 16:03:27.131][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-09-07 16:03:27.131][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:27.132][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:27.133][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:27.134][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:27.134][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:27.135][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:27.136][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:27.137][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:27.137][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-09-07 16:03:27.138][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-09-07 16:03:27.139][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:27.140][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:27.140][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:27.141][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:27.142][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-09-07 16:03:27.143][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:27.144][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:27.144][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:27.145][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:27.146][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:27.147][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:27.148][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:27.149][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:27.149][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:27.150][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:27.151][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:27.152][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:27.153][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171868263].
biodb.DEBUG[2024-09-07 16:03:27.154][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:03:27.155][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:03:27.155][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:03:27.160][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:03:27.161][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:03:27.161][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:03:27.162][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:03:27.163][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:27.164][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:27.164][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:27.165][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:27.166][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:27.167][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:27.167][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:27.168][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:27.169][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-09-07 16:03:27.170][private$selectFields]
biodb.TRACE[2024-09-07 16:03:27.170][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-09-07 16:03:27.171][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-09-07 16:03:27.172][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-09-07 16:03:27.173][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:27.173][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:27.174][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:27.175][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:27.176][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:27.177][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:27.177][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:27.178][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:27.179][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-09-07 16:03:27.180][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-09-07 16:03:27.180][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:27.181][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:27.182][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:27.183][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:27.183][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-09-07 16:03:27.184][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:27.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:27.186][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:27.186][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:27.187][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:27.188][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:27.189][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:27.189][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:27.190][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:27.191][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:27.192][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:27.192][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:27.193][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171868262].
biodb.DEBUG[2024-09-07 16:03:27.194][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-09-07 16:03:27.195][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2024-09-07 16:03:27.202][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2024-09-07 16:03:27.203][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2024-09-07 16:03:27.204][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:27.204][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:27.205][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2024-09-07 16:03:27.206][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2024-09-07 16:03:27.207][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:27.208][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2024-09-07 16:03:27.212][biodb::testThat]
biodb.INFO [2024-09-07 16:03:27.212][biodb::testThat] Running test function  test_annotateMzValues_input_dataframe_untouched  (" Input data frame is not modified by annotateMzValues() ").
biodb.INFO [2024-09-07 16:03:27.213][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-09-07 16:03:27.214][biodb::testThat]
biodb.TRACE[2024-09-07 16:03:27.216][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-09-07 16:03:27.217][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-09-07 16:03:27.218][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:27.219][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:27.219][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-09-07 16:03:27.220][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-09-07 16:03:27.221][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:27.222][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:27.222][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:27.223][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:27.224][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:27.225][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:27.226][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:27.226][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:27.227][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:27.228][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:27.229][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:27.230][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:27.230][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:27.231][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:27.232][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:27.233][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:27.234][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:27.234][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:27.235][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:27.236][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:27.237][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:27.237][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:27.238][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:27.239][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:27.240][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:27.241][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:27.241][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:27.242][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:27.243][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:27.244][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:27.245][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:27.245][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:27.246][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:27.247][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:03:27.251][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:03:27.251][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:03:27.252][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:03:27.256][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:03:27.257][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:03:27.258][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:03:27.258][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:03:27.263][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.23:204.25[MolecularWeight]&retmax=3".
biodb.DEBUG[2024-09-07 16:03:27.266][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-09-07 16:03:27.267][cch$loadFileContent] Trying to load 1 files from cache: [1]: "2616ca37a6f6e1bc281f8c51bc53ce81".
biodb.TRACE[2024-09-07 16:03:27.268][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-09-07 16:03:27.269][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/2616ca37a6f6e1bc281f8c51bc53ce81.content".
biodb.DEBUG[2024-09-07 16:03:27.270][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-09-07 16:03:27.271][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:03:27.272][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:03:27.273][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:03:27.277][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:03:27.277][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:03:27.278][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:03:27.279][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:03:27.280][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:27.281][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:27.282][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:27.282][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:27.283][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:27.284][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:27.284][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:27.285][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:27.286][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-09-07 16:03:27.287][private$selectFields]
biodb.TRACE[2024-09-07 16:03:27.287][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-09-07 16:03:27.288][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-09-07 16:03:27.289][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-09-07 16:03:27.290][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:27.291][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:27.291][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:27.292][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:27.293][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:27.294][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:27.295][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:27.295][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:27.296][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-09-07 16:03:27.297][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-09-07 16:03:27.298][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:27.298][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:27.299][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:27.300][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:27.301][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-09-07 16:03:27.302][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:27.302][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:27.303][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:27.304][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:27.305][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:27.305][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:27.306][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:27.307][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:27.308][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:27.309][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:27.309][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:27.310][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:27.311][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171920215].
biodb.DEBUG[2024-09-07 16:03:27.312][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:03:27.313][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:03:27.313][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:03:27.317][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:03:27.318][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:03:27.319][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:03:27.320][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:03:27.321][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:27.321][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:27.322][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:27.323][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:27.324][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:27.325][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:27.325][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:27.326][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:27.327][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-09-07 16:03:27.328][private$selectFields]
biodb.TRACE[2024-09-07 16:03:27.328][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-09-07 16:03:27.329][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-09-07 16:03:27.330][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-09-07 16:03:27.330][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:27.331][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:27.332][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:27.333][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:27.334][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:27.334][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:27.335][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:27.336][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:27.336][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-09-07 16:03:27.337][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-09-07 16:03:27.338][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:27.339][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:27.340][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:27.340][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:27.341][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-09-07 16:03:27.342][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:27.343][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:27.343][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:27.344][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:27.345][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:27.345][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:27.346][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:27.347][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:27.348][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:27.348][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:27.349][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:27.350][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:27.351][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171904710].
biodb.DEBUG[2024-09-07 16:03:27.352][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:03:27.352][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:03:27.353][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:03:27.357][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:03:27.358][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:03:27.359][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:03:27.359][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:03:27.360][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:27.361][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:27.362][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:27.363][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:27.363][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:27.364][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:27.365][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:27.365][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:27.366][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-09-07 16:03:27.367][private$selectFields]
biodb.TRACE[2024-09-07 16:03:27.368][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-09-07 16:03:27.368][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-09-07 16:03:27.369][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-09-07 16:03:27.370][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:27.371][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:27.371][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:27.372][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:27.373][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:27.374][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:27.374][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:27.375][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:27.376][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-09-07 16:03:27.377][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-09-07 16:03:27.377][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:27.378][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:27.379][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:27.379][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:27.380][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-09-07 16:03:27.381][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:27.382][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:27.383][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:27.389][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:27.390][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:27.391][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:27.391][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:27.392][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:27.393][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:27.394][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:27.395][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:27.395][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:27.396][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171871699].
biodb.DEBUG[2024-09-07 16:03:27.397][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-09-07 16:03:27.398][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-09-07 16:03:27.400][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:03:27.400][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:03:27.401][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:03:27.405][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:03:27.406][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:03:27.407][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:03:27.407][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:03:27.413][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18:226.2[MolecularWeight]&retmax=3".
biodb.DEBUG[2024-09-07 16:03:27.415][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-09-07 16:03:27.416][cch$loadFileContent] Trying to load 1 files from cache: [1]: "69c19f6998e271aebdcd09a030d9b450".
biodb.TRACE[2024-09-07 16:03:27.417][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-09-07 16:03:27.418][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/69c19f6998e271aebdcd09a030d9b450.content".
biodb.DEBUG[2024-09-07 16:03:27.419][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-09-07 16:03:27.421][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:03:27.421][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:03:27.422][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:03:27.426][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:03:27.427][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:03:27.428][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:03:27.428][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:03:27.429][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:27.430][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:27.431][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:27.431][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:27.432][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:27.433][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:27.434][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:27.434][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:27.435][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-09-07 16:03:27.436][private$selectFields]
biodb.TRACE[2024-09-07 16:03:27.436][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-09-07 16:03:27.437][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-09-07 16:03:27.438][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-09-07 16:03:27.439][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:27.440][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:27.440][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:27.441][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:27.442][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:27.442][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:27.443][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:27.444][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:27.444][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-09-07 16:03:27.445][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-09-07 16:03:27.446][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:27.447][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:27.447][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:27.448][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:27.449][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-09-07 16:03:27.449][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:27.450][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:27.451][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:27.452][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:27.452][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:27.453][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:27.454][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:27.454][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:27.455][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:27.456][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:27.457][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:27.457][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:27.458][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171901106].
biodb.DEBUG[2024-09-07 16:03:27.459][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:03:27.460][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:03:27.460][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:03:27.465][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:03:27.465][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:03:27.466][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:03:27.467][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:03:27.467][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:27.468][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:27.469][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:27.470][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:27.471][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:27.471][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:27.472][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:27.473][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:27.473][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-09-07 16:03:27.474][private$selectFields]
biodb.TRACE[2024-09-07 16:03:27.475][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-09-07 16:03:27.476][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-09-07 16:03:27.476][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-09-07 16:03:27.477][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:27.478][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:27.478][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:27.479][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:27.480][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:27.481][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:27.481][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:27.482][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:27.483][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-09-07 16:03:27.483][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-09-07 16:03:27.484][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:27.485][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:27.486][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:27.486][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:27.487][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-09-07 16:03:27.488][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:27.489][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:27.489][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:27.490][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:27.491][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:27.492][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:27.492][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:27.493][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:27.494][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:27.494][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:27.495][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:27.496][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:27.497][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171901072].
biodb.DEBUG[2024-09-07 16:03:27.498][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:03:27.498][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:03:27.499][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:03:27.504][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:03:27.504][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:03:27.505][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:03:27.506][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:03:27.507][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:27.507][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:27.508][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:27.509][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:27.509][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:27.510][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:27.511][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:27.512][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:27.512][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-09-07 16:03:27.513][private$selectFields]
biodb.TRACE[2024-09-07 16:03:27.514][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-09-07 16:03:27.514][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-09-07 16:03:27.515][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-09-07 16:03:27.516][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:27.516][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:27.517][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:27.518][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:27.519][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:27.520][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:27.521][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:27.521][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:27.522][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-09-07 16:03:27.523][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-09-07 16:03:27.523][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:27.524][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:27.525][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:27.526][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:27.526][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-09-07 16:03:27.527][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:27.528][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:27.529][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:27.529][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:27.530][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:27.531][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:27.532][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:27.532][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:27.533][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:27.534][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:27.534][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:27.535][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:27.536][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171877309].
biodb.DEBUG[2024-09-07 16:03:27.537][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-09-07 16:03:27.538][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2024-09-07 16:03:27.555][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:27.556][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:27.556][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:27.557][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:27.558][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:27.559][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:27.560][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:27.560][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:27.561][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:27.562][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:27.563][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:27.563][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:27.564][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:27.565][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:27.565][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:27.566][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:27.567][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:27.568][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:27.568][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:27.569][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:27.570][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:27.570][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:27.571][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:27.572][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:27.572][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:27.573][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:27.574][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:27.575][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:27.576][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:27.577][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:27.577][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:27.578][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:03:27.581][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:03:27.582][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:03:27.583][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:03:27.587][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:03:27.588][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:03:27.588][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:03:27.589][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:03:27.594][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.11358306:204.13358306[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2024-09-07 16:03:27.597][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-09-07 16:03:27.598][cch$loadFileContent] Trying to load 1 files from cache: [1]: "1279ae7853bbae0b1c59971aee79ce72".
biodb.TRACE[2024-09-07 16:03:27.599][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-09-07 16:03:27.600][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/1279ae7853bbae0b1c59971aee79ce72.content".
biodb.DEBUG[2024-09-07 16:03:27.601][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-09-07 16:03:27.603][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:03:27.603][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:03:27.604][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:03:27.608][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:03:27.609][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:03:27.610][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:03:27.610][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:03:27.611][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:27.612][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:27.613][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:27.613][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:27.614][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:27.615][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:27.616][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:27.616][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:27.617][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-09-07 16:03:27.618][private$selectFields]
biodb.TRACE[2024-09-07 16:03:27.619][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-09-07 16:03:27.619][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-09-07 16:03:27.620][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-09-07 16:03:27.621][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:27.622][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:27.622][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:27.623][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:27.624][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:27.625][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:27.625][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:27.626][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:27.627][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-09-07 16:03:27.628][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-09-07 16:03:27.629][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:27.629][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:27.630][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:27.631][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:27.632][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-09-07 16:03:27.632][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:27.633][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:27.634][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:27.635][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:27.635][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:27.636][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:27.637][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:27.638][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:27.638][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:27.639][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:27.640][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:27.641][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:27.642][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171853852].
biodb.DEBUG[2024-09-07 16:03:27.642][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:03:27.643][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:03:27.644][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:03:27.648][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:03:27.649][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:03:27.649][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:03:27.650][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:03:27.651][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:27.657][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:27.658][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:27.659][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:27.660][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:27.661][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:27.661][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:27.662][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:27.663][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-09-07 16:03:27.663][private$selectFields]
biodb.TRACE[2024-09-07 16:03:27.664][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-09-07 16:03:27.665][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-09-07 16:03:27.666][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-09-07 16:03:27.666][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:27.667][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:27.668][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:27.669][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:27.669][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:27.670][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:27.671][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:27.672][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:27.672][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-09-07 16:03:27.673][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-09-07 16:03:27.674][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:27.675][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:27.675][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:27.676][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:27.677][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-09-07 16:03:27.678][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:27.678][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:27.679][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:27.680][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:27.681][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:27.682][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:27.682][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:27.683][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:27.684][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:27.685][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:27.685][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:27.686][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:27.687][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171846466].
biodb.DEBUG[2024-09-07 16:03:27.688][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:03:27.689][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:03:27.689][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:03:27.694][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:03:27.694][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:03:27.695][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:03:27.696][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:03:27.696][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:27.697][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:27.698][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:27.699][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:27.699][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:27.700][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:27.701][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:27.702][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:27.703][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-09-07 16:03:27.703][private$selectFields]
biodb.TRACE[2024-09-07 16:03:27.704][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-09-07 16:03:27.705][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-09-07 16:03:27.705][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-09-07 16:03:27.706][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:27.707][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:27.708][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:27.709][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:27.709][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:27.710][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:27.711][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:27.711][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:27.712][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-09-07 16:03:27.713][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-09-07 16:03:27.713][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:27.714][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:27.715][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:27.715][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:27.716][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-09-07 16:03:27.717][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:27.718][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:27.719][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:27.719][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:27.720][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:27.721][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:27.721][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:27.722][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:27.723][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:27.723][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:27.724][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:27.725][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:27.726][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171834268].
biodb.DEBUG[2024-09-07 16:03:27.727][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-09-07 16:03:27.727][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-09-07 16:03:27.729][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:03:27.730][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:03:27.730][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:03:27.734][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:03:27.735][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:03:27.736][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:03:27.736][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:03:27.742][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.04897142:226.06897142[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2024-09-07 16:03:27.744][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-09-07 16:03:27.745][cch$loadFileContent] Trying to load 1 files from cache: [1]: "6eb047352a5797ace7dc0cd8f5af7cbf".
biodb.TRACE[2024-09-07 16:03:27.746][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-09-07 16:03:27.747][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/6eb047352a5797ace7dc0cd8f5af7cbf.content".
biodb.DEBUG[2024-09-07 16:03:27.748][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-09-07 16:03:27.750][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:03:27.750][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:03:27.751][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:03:27.755][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:03:27.756][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:03:27.757][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:03:27.757][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:03:27.758][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:27.759][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:27.760][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:27.761][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:27.762][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:27.762][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:27.763][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:27.764][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:27.765][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-09-07 16:03:27.765][private$selectFields]
biodb.TRACE[2024-09-07 16:03:27.766][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-09-07 16:03:27.767][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-09-07 16:03:27.767][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-09-07 16:03:27.768][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:27.769][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:27.769][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:27.770][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:27.771][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:27.772][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:27.772][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:27.773][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:27.774][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-09-07 16:03:27.775][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-09-07 16:03:27.775][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:27.776][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:27.777][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:27.777][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:27.778][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-09-07 16:03:27.779][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:27.780][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:27.780][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:27.781][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:27.782][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:27.782][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:27.783][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:27.784][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:27.785][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:27.786][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:27.786][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:27.787][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:27.788][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171920436].
biodb.DEBUG[2024-09-07 16:03:27.789][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:03:27.790][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:03:27.790][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:03:27.795][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:03:27.795][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:03:27.796][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:03:27.797][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:03:27.798][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:27.799][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:27.799][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:27.800][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:27.801][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:27.802][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:27.802][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:27.803][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:27.804][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-09-07 16:03:27.805][private$selectFields]
biodb.TRACE[2024-09-07 16:03:27.805][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-09-07 16:03:27.806][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-09-07 16:03:27.807][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-09-07 16:03:27.807][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:27.808][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:27.809][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:27.810][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:27.810][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:27.811][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:27.812][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:27.812][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:27.813][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-09-07 16:03:27.814][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-09-07 16:03:27.815][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:27.815][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:27.816][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:27.817][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:27.817][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-09-07 16:03:27.818][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:27.819][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:27.820][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:27.820][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:27.821][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:27.822][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:27.823][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:27.824][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:27.824][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:27.825][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:27.826][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:27.826][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:27.827][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171900686].
biodb.DEBUG[2024-09-07 16:03:27.828][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:03:27.829][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:03:27.829][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:03:27.834][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:03:27.834][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:03:27.835][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:03:27.836][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:03:27.837][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:27.837][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:27.838][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:27.839][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:27.840][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:27.840][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:27.841][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:27.842][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:27.843][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-09-07 16:03:27.843][private$selectFields]
biodb.TRACE[2024-09-07 16:03:27.844][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-09-07 16:03:27.845][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-09-07 16:03:27.845][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-09-07 16:03:27.846][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:27.847][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:27.848][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:27.848][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:27.849][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:27.850][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:27.850][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:27.851][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:27.852][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-09-07 16:03:27.853][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-09-07 16:03:27.854][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:27.854][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:27.855][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:27.856][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:27.856][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-09-07 16:03:27.857][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:27.858][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:27.859][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:27.860][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:27.860][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:27.861][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:27.862][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:27.863][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:27.863][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:27.864][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:27.865][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:27.866][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:27.867][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171900685].
biodb.DEBUG[2024-09-07 16:03:27.868][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-09-07 16:03:27.868][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2024-09-07 16:03:27.885][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2024-09-07 16:03:27.886][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2024-09-07 16:03:27.887][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:27.887][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:27.888][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2024-09-07 16:03:27.889][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2024-09-07 16:03:27.889][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:27.890][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:27.893][ef$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:03:27.894][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:03:27.895][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:27.896][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:27.896][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:27.897][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:27.898][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:27.898][ef$get] fields variable is a list.
biodb.INFO [2024-09-07 16:03:27.900][biodb::testThat]
biodb.INFO [2024-09-07 16:03:27.901][biodb::testThat] Running test function  test.annotateMzValues_real_values  (" annotateMzValues() works correctly with real values. ").
biodb.INFO [2024-09-07 16:03:27.901][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-09-07 16:03:27.902][biodb::testThat]
biodb.TRACE[2024-09-07 16:03:27.905][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-09-07 16:03:27.905][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-09-07 16:03:27.906][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:27.907][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:27.908][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-09-07 16:03:27.909][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-09-07 16:03:27.909][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:27.910][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:27.911][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:27.911][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:27.912][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:27.913][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:27.914][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:27.914][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:27.915][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:27.916][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:27.917][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:27.923][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:27.924][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:27.925][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:27.926][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:27.927][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:27.928][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:27.928][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:27.929][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:27.930][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:27.931][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:27.931][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:27.932][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:27.933][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:27.934][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:27.934][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:27.935][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:27.936][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:27.937][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:27.938][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:27.938][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:27.939][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:27.940][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:27.941][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:03:27.943][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:03:27.944][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:03:27.945][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:03:27.949][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:03:27.950][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:03:27.950][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:03:27.951][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:03:27.956][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.03:204.25[MolecularWeight]&retmax=3".
biodb.DEBUG[2024-09-07 16:03:27.959][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-09-07 16:03:27.959][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-09-07 16:03:27.961][private$doSendRequestOnce] Sent URL is "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.03%3A204.25%5BMolecularWeight%5D&retmax=3".
biodb.TRACE[2024-09-07 16:03:28.037][doesRCurlRequestUrlExist] According to RCurl, URL https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.03%3A204.25%5BMolecularWeight%5D&retmax=3 does not exist.
biodb.TRACE[2024-09-07 16:03:28.038][getUrlRequestResult] Using base::url() for sending request.
biodb.DEBUG[2024-09-07 16:03:28.039][getUrlRequestResult] URL "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.03%3A204.25%5BMolecularWeight%5D&retmax=3" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
biodb.TRACE[2024-09-07 16:03:28.040][getBaseUrlRequestResult] Using base::url() for sending request (https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.03%3A204.25%5BMolecularWeight%5D&retmax=3).
biodb.DEBUG[2024-09-07 16:03:28.161][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2024-09-07 16:03:28.163][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/9701d2e1a6b096cdfd56943877648611.content"
biodb.TRACE[2024-09-07 16:03:28.166][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/9701d2e1a6b096cdfd56943877648611.request"
biodb.DEBUG[2024-09-07 16:03:28.168][private$loadEntries] Creating entries from ids [2]: "171905266, 171905261".
biodb.DEBUG[2024-09-07 16:03:28.168][conn$getEntryContent] Get PubChem Compound entry content(s) for 2 id(s)...
biodb.TRACE[2024-09-07 16:03:28.170][cch$loadFileContent] Trying to load 2 files from cache: [2]: "171905266, 171905261".
biodb.TRACE[2024-09-07 16:03:28.170][cch$loadFileContent] file.exist = [2]: "FALSE, FALSE".
biodb.TRACE[2024-09-07 16:03:28.171][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-09-07 16:03:28.172][conn$getEntryContent] 0 PubChem Compound entry content(s) loaded from cache.
biodb.DEBUG[2024-09-07 16:03:28.173][conn$getEntryContent] 2 entry content(s) need to be fetched from PubChem Compound database "https://pubchem.ncbi.nlm.nih.gov/".
biodb.DEBUG[2024-09-07 16:03:28.173][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-09-07 16:03:28.174][conn$getEntryContent] 1 chunk(s) to download.
biodb.INFO [2024-09-07 16:03:28.175][private$retrieveContents] Get entry content(s) for 2 id(s)...
biodb.DEBUG[2024-09-07 16:03:28.176][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/171905266,171905261/XML".
biodb.DEBUG[2024-09-07 16:03:28.178][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-09-07 16:03:28.179][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-09-07 16:03:28.179][private$doSendRequestOnce] Sent URL is "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/171905266,171905261/XML".
biodb.TRACE[2024-09-07 16:03:28.283][getRCurlRequestResult] Using RCurl package for sending request (https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/171905266,171905261/XML).
biodb.TRACE[2024-09-07 16:03:28.494][private$doSaveContentToFile] Saving to cache [2]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/171905266.xml, /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/171905261.xml"
biodb.DEBUG[2024-09-07 16:03:28.496][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-09-07 16:03:28.497][self$createEntryFromContent] Creating PubChem Compound entries from 2 content(s).
biodb.DEBUG[2024-09-07 16:03:28.498][self$createEntryFromContent] Parsing 2 PubChem Compound entries.
biodb.DEBUG[2024-09-07 16:03:28.499][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:03:28.500][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:03:28.500][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:03:28.505][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:03:28.505][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:03:28.506][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:03:28.507][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:03:28.509][ef$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:28.510][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:28.510][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:28.511][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:28.512][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:28.513][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:28.513][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:28.514][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:28.515][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:28.516][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:28.517][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:28.517][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:28.518][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:28.519][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:28.520][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:28.521][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:28.522][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:28.522][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:28.523][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:28.524][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:28.525][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:28.526][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:28.526][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:28.527][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:28.528][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:28.529][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:28.530][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:28.530][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:28.531][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:28.532][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:28.533][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:28.533][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:28.534][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:28.535][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:28.536][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:28.536][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:28.538][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:28.539][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:28.539][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:28.540][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:28.541][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:28.542][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:28.543][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:28.543][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:28.544][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:28.545][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:28.546][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:28.546][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:28.547][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2024-09-07 16:03:28.548][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:28.549][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:28.550][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:28.551][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-09-07 16:03:28.551][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:28.552][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:28.553][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:28.554][ef$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:03:28.554][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:03:28.555][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:28.556][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:28.557][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:03:28.558][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:03:28.558][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:28.559][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:28.560][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:03:28.561][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:03:28.561][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:28.562][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:28.563][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:03:28.564][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:03:28.564][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:28.565][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:28.566][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:03:28.567][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:03:28.567][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:28.568][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:28.569][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:03:28.570][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:03:28.570][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:28.571][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:28.572][ef$get] Asked field names are: logp.
biodb.TRACE[2024-09-07 16:03:28.573][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-09-07 16:03:28.573][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:28.574][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:28.575][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-09-07 16:03:28.576][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-09-07 16:03:28.576][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:28.577][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:28.578][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-09-07 16:03:28.578][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:28.579][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:28.580][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:28.581][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-09-07 16:03:28.582][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:28.582][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:28.583][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:28.584][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:28.585][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:28.586][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:28.586][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:28.587][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:28.588][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:28.589][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:28.589][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:28.590][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:28.591][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:28.592][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:28.592][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:28.593][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:28.594][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:28.595][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:28.595][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:28.596][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2024-09-07 16:03:28.597][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:28.598][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:28.598][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:28.599][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:28.600][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:28.601][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:28.601][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:28.602][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:28.603][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:28.604][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:28.604][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:28.605][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2024-09-07 16:03:28.606][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:28.607][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:28.607][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:28.608][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:28.609][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:28.610][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:28.610][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:28.611][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:28.612][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:28.613][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:28.613][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:28.614][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2024-09-07 16:03:28.615][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:28.615][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:28.616][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:28.617][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:28.618][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:28.618][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:28.619][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:28.620][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:28.620][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:28.621][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:28.622][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:28.623][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2024-09-07 16:03:28.624][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:28.624][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:28.625][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:28.626][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:28.626][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:28.627][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:28.628][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:28.629][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:28.629][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:28.630][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:28.631][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:28.631][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2024-09-07 16:03:28.632][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:28.633][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:28.634][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:28.635][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:28.635][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:28.636][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:28.637][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:28.638][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:28.638][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:28.639][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:28.640][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:28.640][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:03:28.641][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:03:28.642][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:28.643][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:28.643][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:28.644][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:28.645][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:28.646][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:28.646][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:28.647][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:28.648][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:28.648][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:28.649][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:28.650][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:28.651][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:28.652][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:28.652][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:28.653][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:28.654][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:28.655][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:28.655][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:28.656][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:28.657][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:28.658][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:28.659][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:28.659][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:28.660][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:28.661][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:28.662][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:28.662][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:28.663][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:28.664][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:03:28.665][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:03:28.665][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:03:28.666][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:03:28.671][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:03:28.672][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:03:28.672][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:03:28.673][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:03:28.675][ef$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:28.676][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:28.677][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:28.677][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:28.678][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:28.679][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:28.680][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:28.681][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:28.681][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:28.682][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:28.683][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:28.684][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:28.685][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:28.686][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:28.686][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:28.687][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:28.688][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:28.698][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:28.699][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:28.700][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:28.701][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:28.702][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:28.702][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:28.703][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:28.704][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:28.705][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:28.706][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:28.706][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:28.707][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:28.708][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:28.709][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:28.710][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:28.711][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:28.711][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:28.712][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:28.713][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:28.714][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:28.715][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:28.715][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:28.716][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:28.717][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:28.718][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:28.719][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:28.719][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:28.720][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:28.721][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:28.722][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:28.723][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:28.723][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2024-09-07 16:03:28.724][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:28.725][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:28.726][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:28.727][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-09-07 16:03:28.728][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:28.728][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:28.729][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:28.730][ef$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:03:28.731][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:03:28.731][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:28.732][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:28.733][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:03:28.734][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:03:28.734][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:28.735][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:28.736][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:03:28.737][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:03:28.737][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:28.738][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:28.739][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:03:28.740][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:03:28.740][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:28.741][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:28.742][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:03:28.743][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:03:28.743][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:28.744][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:28.745][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:03:28.746][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:03:28.747][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:28.747][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:28.748][ef$get] Asked field names are: logp.
biodb.TRACE[2024-09-07 16:03:28.749][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-09-07 16:03:28.750][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:28.751][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:28.751][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-09-07 16:03:28.752][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-09-07 16:03:28.753][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:28.753][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:28.754][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-09-07 16:03:28.755][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:28.756][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:28.756][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:28.757][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-09-07 16:03:28.758][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:28.759][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:28.759][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:28.760][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:28.761][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:28.762][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:28.763][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:28.764][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:28.764][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:28.765][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:28.766][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:28.767][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:28.768][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:28.768][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:28.769][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:28.770][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:28.771][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:28.771][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:28.772][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:28.773][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2024-09-07 16:03:28.774][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:28.774][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:28.775][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:28.776][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:28.777][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:28.777][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:28.778][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:28.779][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:28.780][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:28.780][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:28.781][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:28.782][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2024-09-07 16:03:28.783][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:28.783][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:28.784][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:28.785][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:28.786][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:28.786][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:28.787][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:28.788][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:28.788][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:28.789][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:28.790][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:28.791][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2024-09-07 16:03:28.792][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:28.792][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:28.793][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:28.794][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:28.795][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:28.795][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:28.796][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:28.797][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:28.797][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:28.798][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:28.799][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:28.800][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2024-09-07 16:03:28.801][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:28.801][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:28.802][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:28.803][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:28.804][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:28.804][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:28.805][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:28.806][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:28.807][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:28.807][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:28.808][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:28.809][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2024-09-07 16:03:28.810][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:28.810][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:28.811][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:28.812][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:28.813][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:28.814][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:28.814][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:28.815][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:28.816][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:28.817][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:28.817][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:28.818][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:03:28.819][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:03:28.820][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:28.820][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:28.821][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:28.822][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:28.823][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:28.823][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:28.824][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:28.825][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:28.826][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:28.826][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:28.827][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:28.828][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:28.829][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:28.829][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:28.830][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:28.831][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:28.832][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:28.832][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:28.833][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:28.834][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:28.835][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:28.836][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:28.836][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:28.837][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:28.838][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:28.838][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:28.839][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:28.840][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:28.841][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:28.842][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:28.842][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:28.843][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:28.844][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:28.845][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:28.845][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:28.846][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:28.847][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:28.847][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:28.848][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:28.849][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:28.850][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:28.850][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:28.851][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:28.852][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:28.853][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:28.853][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:28.854][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:28.855][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:28.855][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:28.856][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:28.857][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:28.858][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:28.859][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:28.859][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:03:28.860][self$createEntryFromContent] Accession numbers: 171905266, 171905261.
biodb.DEBUG[2024-09-07 16:03:28.861][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-09-07 16:03:28.862][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:03:28.863][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:03:28.863][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:03:28.868][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:03:28.868][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:03:28.869][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:03:28.870][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:03:28.871][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:28.872][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:28.872][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:28.873][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:28.874][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:28.875][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:28.875][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:28.876][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:28.877][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-09-07 16:03:28.877][private$selectFields]
biodb.TRACE[2024-09-07 16:03:28.878][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-09-07 16:03:28.879][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-09-07 16:03:28.880][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-09-07 16:03:28.880][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:28.881][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:28.882][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:28.883][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:28.883][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:28.884][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:28.885][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:28.885][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:28.886][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-09-07 16:03:28.887][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-09-07 16:03:28.888][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:28.888][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:28.889][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:28.890][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:28.891][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-09-07 16:03:28.892][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:28.892][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:28.893][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:28.894][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:28.895][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:28.895][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:28.896][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:28.897][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:28.898][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:28.899][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:28.899][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:28.900][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:28.901][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171920215].
biodb.DEBUG[2024-09-07 16:03:28.902][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:03:28.902][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:03:28.903][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:03:28.907][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:03:28.908][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:03:28.909][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:03:28.910][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:03:28.911][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:28.911][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:28.912][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:28.913][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:28.913][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:28.914][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:28.915][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:28.916][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:28.916][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-09-07 16:03:28.917][private$selectFields]
biodb.TRACE[2024-09-07 16:03:28.918][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-09-07 16:03:28.918][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-09-07 16:03:28.919][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-09-07 16:03:28.920][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:28.921][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:28.922][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:28.922][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:28.923][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:28.924][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:28.924][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:28.925][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:28.926][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-09-07 16:03:28.927][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-09-07 16:03:28.927][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:28.928][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:28.929][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:28.929][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:28.930][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-09-07 16:03:28.931][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:28.932][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:28.933][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:28.933][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:28.934][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:28.935][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:28.935][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:28.936][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:28.937][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:28.938][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:28.939][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:28.939][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:28.940][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171905266].
biodb.DEBUG[2024-09-07 16:03:28.941][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:03:28.942][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:03:28.943][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:03:28.947][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:03:28.948][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:03:28.949][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:03:28.949][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:03:28.950][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:28.951][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:28.952][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:28.957][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:28.958][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:28.959][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:28.960][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:28.961][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:28.962][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-09-07 16:03:28.963][private$selectFields]
biodb.TRACE[2024-09-07 16:03:28.963][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-09-07 16:03:28.964][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-09-07 16:03:28.965][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-09-07 16:03:28.966][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:28.966][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:28.967][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:28.968][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:28.968][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:28.969][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:28.970][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:28.971][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:28.971][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-09-07 16:03:28.972][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-09-07 16:03:28.973][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:28.974][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:28.974][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:28.975][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:28.976][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-09-07 16:03:28.977][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:28.977][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:28.978][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:28.979][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:28.980][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:28.981][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:28.981][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:28.982][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:28.983][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:28.984][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:28.984][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:28.985][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:28.986][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171905261].
biodb.DEBUG[2024-09-07 16:03:28.987][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-09-07 16:03:28.987][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-09-07 16:03:28.989][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:03:28.990][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:03:28.990][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:03:28.995][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:03:28.995][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:03:28.996][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:03:28.997][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:03:29.002][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=225.98:226.2[MolecularWeight]&retmax=3".
biodb.DEBUG[2024-09-07 16:03:29.004][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-09-07 16:03:29.005][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-09-07 16:03:29.007][private$doSendRequestOnce] Sent URL is "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=225.98%3A226.2%5BMolecularWeight%5D&retmax=3".
biodb.TRACE[2024-09-07 16:03:29.084][doesRCurlRequestUrlExist] According to RCurl, URL https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=225.98%3A226.2%5BMolecularWeight%5D&retmax=3 does not exist.
biodb.TRACE[2024-09-07 16:03:29.085][getUrlRequestResult] Using base::url() for sending request.
biodb.DEBUG[2024-09-07 16:03:29.086][getUrlRequestResult] URL "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=225.98%3A226.2%5BMolecularWeight%5D&retmax=3" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
biodb.TRACE[2024-09-07 16:03:29.087][getBaseUrlRequestResult] Using base::url() for sending request (https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=225.98%3A226.2%5BMolecularWeight%5D&retmax=3).
biodb.DEBUG[2024-09-07 16:03:29.179][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2024-09-07 16:03:29.181][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/ce15c6e17e9ed97ba06e918ccdf7a5ba.content"
biodb.TRACE[2024-09-07 16:03:29.184][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/ce15c6e17e9ed97ba06e918ccdf7a5ba.request"
biodb.DEBUG[2024-09-07 16:03:29.186][private$loadEntries] Creating entries from ids [2]: "171904731, 171904523".
biodb.DEBUG[2024-09-07 16:03:29.186][conn$getEntryContent] Get PubChem Compound entry content(s) for 2 id(s)...
biodb.TRACE[2024-09-07 16:03:29.188][cch$loadFileContent] Trying to load 2 files from cache: [2]: "171904731, 171904523".
biodb.TRACE[2024-09-07 16:03:29.189][cch$loadFileContent] file.exist = [2]: "FALSE, FALSE".
biodb.TRACE[2024-09-07 16:03:29.189][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-09-07 16:03:29.190][conn$getEntryContent] 0 PubChem Compound entry content(s) loaded from cache.
biodb.DEBUG[2024-09-07 16:03:29.191][conn$getEntryContent] 2 entry content(s) need to be fetched from PubChem Compound database "https://pubchem.ncbi.nlm.nih.gov/".
biodb.DEBUG[2024-09-07 16:03:29.192][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-09-07 16:03:29.192][conn$getEntryContent] 1 chunk(s) to download.
biodb.INFO [2024-09-07 16:03:29.193][private$retrieveContents] Get entry content(s) for 2 id(s)...
biodb.DEBUG[2024-09-07 16:03:29.194][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/171904731,171904523/XML".
biodb.DEBUG[2024-09-07 16:03:29.196][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-09-07 16:03:29.197][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-09-07 16:03:29.198][private$doSendRequestOnce] Sent URL is "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/171904731,171904523/XML".
biodb.TRACE[2024-09-07 16:03:29.333][getRCurlRequestResult] Using RCurl package for sending request (https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/171904731,171904523/XML).
biodb.TRACE[2024-09-07 16:03:29.516][private$doSaveContentToFile] Saving to cache [2]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/171904731.xml, /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/171904523.xml"
biodb.DEBUG[2024-09-07 16:03:29.518][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-09-07 16:03:29.519][self$createEntryFromContent] Creating PubChem Compound entries from 2 content(s).
biodb.DEBUG[2024-09-07 16:03:29.520][self$createEntryFromContent] Parsing 2 PubChem Compound entries.
biodb.DEBUG[2024-09-07 16:03:29.521][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:03:29.522][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:03:29.522][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:03:29.527][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:03:29.527][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:03:29.528][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:03:29.529][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:03:29.530][ef$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:29.531][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:29.532][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:29.533][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:29.534][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:29.535][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:29.535][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:29.536][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:29.537][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:29.538][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:29.538][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:29.539][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:29.540][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:29.541][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:29.541][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:29.542][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:29.543][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:29.544][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:29.545][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:29.545][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:29.546][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:29.547][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:29.548][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:29.549][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:29.549][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:29.550][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:29.551][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:29.551][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:29.552][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:29.553][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:29.554][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:29.555][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:29.555][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:29.556][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:29.557][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:29.558][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:29.558][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:29.559][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:29.560][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:29.561][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:29.561][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:29.562][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:29.563][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:29.564][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:29.565][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:29.565][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:29.566][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:29.567][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:29.568][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2024-09-07 16:03:29.568][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:29.569][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:29.570][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:29.571][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-09-07 16:03:29.571][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:29.572][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:29.573][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:29.574][ef$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:03:29.574][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:03:29.575][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:29.576][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:29.577][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:03:29.577][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:03:29.578][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:29.579][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:29.580][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:03:29.580][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:03:29.581][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:29.582][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:29.583][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:03:29.583][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:03:29.584][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:29.585][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:29.586][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:03:29.586][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:03:29.587][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:29.588][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:29.589][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:03:29.589][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:03:29.590][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:29.591][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:29.592][ef$get] Asked field names are: logp.
biodb.TRACE[2024-09-07 16:03:29.593][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-09-07 16:03:29.593][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:29.594][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:29.595][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-09-07 16:03:29.596][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:29.596][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:29.597][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:29.598][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-09-07 16:03:29.599][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:29.600][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:29.600][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:29.601][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:29.602][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:29.603][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:29.603][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:29.604][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:29.605][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:29.606][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:29.606][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:29.607][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:29.608][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:29.609][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:29.609][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:29.610][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:29.611][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:29.612][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:29.613][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:29.613][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2024-09-07 16:03:29.614][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:29.615][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:29.616][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:29.616][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:29.617][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:29.618][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:29.619][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:29.619][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:29.620][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:29.621][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:29.622][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:29.622][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2024-09-07 16:03:29.623][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:29.624][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:29.625][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:29.626][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:29.626][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:29.627][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:29.628][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:29.628][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:29.629][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:29.630][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:29.631][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:29.632][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2024-09-07 16:03:29.632][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:29.633][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:29.634][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:29.635][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:29.636][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:29.636][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:29.637][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:29.638][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:29.639][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:29.639][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:29.640][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:29.641][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2024-09-07 16:03:29.642][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:29.642][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:29.643][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:29.644][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:29.645][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:29.645][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:29.646][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:29.647][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:29.648][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:29.648][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:29.649][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:29.650][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2024-09-07 16:03:29.651][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:29.651][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:29.652][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:29.653][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:29.654][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:29.654][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:29.655][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:29.656][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:29.657][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:29.657][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:29.658][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:29.659][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:03:29.660][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:03:29.660][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:29.661][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:29.662][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:29.663][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:29.663][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:29.664][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:29.665][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:29.666][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:29.666][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:29.667][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:29.668][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:29.669][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:29.669][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:29.670][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:29.671][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:29.671][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:29.672][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:29.673][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:29.674][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:29.674][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:29.675][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:29.676][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:29.677][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:29.677][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:29.678][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:29.679][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:29.679][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:29.680][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:29.681][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:29.682][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:03:29.682][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:03:29.683][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:03:29.684][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:03:29.688][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:03:29.689][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:03:29.690][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:03:29.690][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:03:29.692][ef$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:29.693][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:29.694][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:29.694][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:29.704][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:29.705][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:29.706][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:29.707][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:29.708][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:29.709][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:29.710][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:29.710][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:29.712][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:29.712][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:29.713][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:29.714][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:29.714][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:29.715][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:29.716][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:29.717][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:29.718][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:29.719][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:29.719][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:29.720][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:29.721][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:29.722][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:29.722][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:29.723][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:29.724][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:29.725][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:29.725][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:29.726][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:29.727][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:29.728][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:29.728][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:29.729][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:29.730][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:29.731][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:29.732][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:29.732][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:29.733][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:29.734][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:29.735][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:29.735][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:29.736][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:29.737][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:29.738][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:29.738][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:29.739][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2024-09-07 16:03:29.740][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:29.741][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:29.741][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:29.742][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-09-07 16:03:29.743][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:29.744][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:29.744][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:29.745][ef$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:03:29.746][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:03:29.747][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:29.747][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:29.748][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:03:29.749][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:03:29.750][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:29.751][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:29.751][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:03:29.752][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:03:29.753][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:29.754][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:29.754][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:03:29.755][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:03:29.756][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:29.757][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:29.757][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:03:29.758][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:03:29.759][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:29.759][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:29.760][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:03:29.761][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:03:29.762][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:29.763][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:29.764][ef$get] Asked field names are: logp.
biodb.TRACE[2024-09-07 16:03:29.764][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-09-07 16:03:29.765][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:29.766][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:29.767][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-09-07 16:03:29.767][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-09-07 16:03:29.768][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:29.769][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:29.770][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-09-07 16:03:29.770][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:29.771][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:29.772][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:29.773][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-09-07 16:03:29.773][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:29.774][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:29.775][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:29.776][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:29.777][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:29.777][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:29.778][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:29.779][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:29.780][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:29.780][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:29.781][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:29.782][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:29.783][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:29.783][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:29.784][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:29.785][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:29.786][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:29.787][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:29.787][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:29.788][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2024-09-07 16:03:29.789][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:29.790][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:29.791][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:29.791][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:29.792][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:29.793][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:29.794][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:29.794][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:29.795][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:29.796][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:29.797][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:29.797][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2024-09-07 16:03:29.798][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:29.799][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:29.800][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:29.800][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:29.801][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:29.802][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:29.803][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:29.803][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:29.804][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:29.805][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:29.805][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:29.806][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2024-09-07 16:03:29.807][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:29.808][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:29.808][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:29.809][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:29.810][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:29.811][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:29.811][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:29.812][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:29.813][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:29.814][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:29.814][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:29.815][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2024-09-07 16:03:29.816][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:29.817][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:29.817][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:29.818][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:29.819][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:29.819][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:29.820][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:29.821][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:29.822][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:29.822][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:29.823][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:29.824][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2024-09-07 16:03:29.825][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:29.826][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:29.826][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:29.827][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:29.828][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:29.829][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:29.829][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:29.830][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:29.831][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:29.832][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:29.832][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:29.833][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:03:29.834][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:03:29.835][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:29.835][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:29.836][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:29.837][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:29.838][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:29.838][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:29.839][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:29.840][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:29.841][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:29.841][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:29.842][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:29.843][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:29.844][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:29.844][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:29.845][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:29.846][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:29.846][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:29.847][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:29.848][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:29.848][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:29.849][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:29.850][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:29.851][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:29.852][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:29.852][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:29.853][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:29.854][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:29.855][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:29.855][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:29.856][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:29.857][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:29.858][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:29.858][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:29.859][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:29.860][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:29.861][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:29.861][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:29.862][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:29.863][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:29.864][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:29.864][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:29.865][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:29.866][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:29.867][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:29.867][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:29.868][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:29.869][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:29.870][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:29.870][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:29.871][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:29.872][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:29.872][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:29.873][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:29.874][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:03:29.875][self$createEntryFromContent] Accession numbers: 171904731, 171904523.
biodb.DEBUG[2024-09-07 16:03:29.875][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-09-07 16:03:29.877][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:03:29.878][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:03:29.878][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:03:29.882][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:03:29.883][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:03:29.884][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:03:29.884][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:03:29.885][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:29.886][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:29.887][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:29.887][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:29.888][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:29.889][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:29.890][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:29.890][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:29.891][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-09-07 16:03:29.892][private$selectFields]
biodb.TRACE[2024-09-07 16:03:29.893][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-09-07 16:03:29.893][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-09-07 16:03:29.894][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-09-07 16:03:29.895][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:29.895][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:29.896][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:29.897][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:29.897][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:29.898][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:29.899][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:29.900][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:29.901][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-09-07 16:03:29.901][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-09-07 16:03:29.902][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:29.903][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:29.904][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:29.904][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:29.905][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-09-07 16:03:29.906][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:29.907][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:29.907][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:29.908][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:29.909][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:29.909][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:29.910][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:29.911][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:29.912][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:29.912][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:29.913][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:29.914][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:29.915][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171904731].
biodb.DEBUG[2024-09-07 16:03:29.916][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:03:29.916][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:03:29.917][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:03:29.921][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:03:29.922][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:03:29.923][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:03:29.923][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:03:29.924][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:29.925][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:29.926][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:29.926][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:29.927][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:29.928][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:29.929][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:29.930][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:29.930][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-09-07 16:03:29.931][private$selectFields]
biodb.TRACE[2024-09-07 16:03:29.932][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-09-07 16:03:29.932][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-09-07 16:03:29.933][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-09-07 16:03:29.934][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:29.935][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:29.936][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:29.936][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:29.937][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:29.938][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:29.939][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:29.939][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:29.940][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-09-07 16:03:29.941][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-09-07 16:03:29.942][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:29.942][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:29.943][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:29.944][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:29.945][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-09-07 16:03:29.945][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:29.946][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:29.947][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:29.948][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:29.948][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:29.949][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:29.950][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:29.951][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:29.952][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:29.953][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:29.953][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:29.954][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:29.960][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171904523].
biodb.DEBUG[2024-09-07 16:03:29.961][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:03:29.962][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:03:29.963][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:03:29.967][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:03:29.968][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:03:29.969][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:03:29.969][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:03:29.970][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:29.971][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:29.972][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:29.972][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:29.973][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:29.974][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:29.975][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:29.975][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:29.976][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-09-07 16:03:29.977][private$selectFields]
biodb.TRACE[2024-09-07 16:03:29.978][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-09-07 16:03:29.979][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-09-07 16:03:29.979][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-09-07 16:03:29.980][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:29.981][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:29.982][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:29.982][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:29.983][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:29.984][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:29.985][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:29.985][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:29.986][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-09-07 16:03:29.987][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-09-07 16:03:29.988][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:29.989][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:29.989][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:29.990][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:29.991][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-09-07 16:03:29.992][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:29.992][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:29.993][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:29.994][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:29.995][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:29.995][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:29.996][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:29.997][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:29.998][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:29.998][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:29.999][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:30.000][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:30.001][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171901106].
biodb.DEBUG[2024-09-07 16:03:30.002][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-09-07 16:03:30.002][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-09-07 16:03:30.020][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:03:30.021][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:03:30.022][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:03:30.025][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:03:30.026][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:03:30.027][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:03:30.028][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:03:30.033][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.23:204.25[MolecularWeight]&retmax=3".
biodb.DEBUG[2024-09-07 16:03:30.035][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-09-07 16:03:30.036][cch$loadFileContent] Trying to load 1 files from cache: [1]: "2616ca37a6f6e1bc281f8c51bc53ce81".
biodb.TRACE[2024-09-07 16:03:30.037][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-09-07 16:03:30.038][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/2616ca37a6f6e1bc281f8c51bc53ce81.content".
biodb.DEBUG[2024-09-07 16:03:30.039][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-09-07 16:03:30.041][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:03:30.041][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:03:30.042][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:03:30.046][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:03:30.047][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:03:30.047][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:03:30.048][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:03:30.049][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:30.050][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:30.051][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:30.051][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:30.052][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:30.053][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:30.053][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:30.054][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:30.055][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-09-07 16:03:30.056][private$selectFields]
biodb.TRACE[2024-09-07 16:03:30.057][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-09-07 16:03:30.057][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-09-07 16:03:30.058][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-09-07 16:03:30.059][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:30.060][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:30.060][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:30.061][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:30.062][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:30.063][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:30.063][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:30.064][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:30.065][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-09-07 16:03:30.065][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-09-07 16:03:30.066][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:30.067][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:30.068][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:30.069][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:30.069][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-09-07 16:03:30.070][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:30.071][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:30.072][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:30.072][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:30.073][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:30.074][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:30.075][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:30.075][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:30.076][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:30.077][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:30.077][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:30.078][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:30.079][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171920215].
biodb.DEBUG[2024-09-07 16:03:30.080][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:03:30.081][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:03:30.081][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:03:30.086][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:03:30.086][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:03:30.087][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:03:30.088][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:03:30.088][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:30.089][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:30.090][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:30.091][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:30.091][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:30.092][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:30.093][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:30.093][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:30.094][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-09-07 16:03:30.095][private$selectFields]
biodb.TRACE[2024-09-07 16:03:30.096][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-09-07 16:03:30.096][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-09-07 16:03:30.097][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-09-07 16:03:30.098][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:30.099][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:30.099][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:30.100][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:30.101][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:30.101][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:30.102][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:30.103][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:30.104][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-09-07 16:03:30.104][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-09-07 16:03:30.105][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:30.106][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:30.106][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:30.107][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:30.108][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-09-07 16:03:30.109][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:30.109][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:30.110][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:30.111][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:30.112][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:30.112][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:30.113][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:30.114][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:30.115][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:30.115][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:30.116][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:30.117][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:30.118][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171904710].
biodb.DEBUG[2024-09-07 16:03:30.119][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:03:30.119][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:03:30.120][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:03:30.124][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:03:30.125][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:03:30.125][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:03:30.126][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:03:30.127][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:30.128][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:30.128][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:30.129][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:30.130][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:30.131][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:30.131][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:30.132][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:30.133][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-09-07 16:03:30.133][private$selectFields]
biodb.TRACE[2024-09-07 16:03:30.134][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-09-07 16:03:30.135][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-09-07 16:03:30.136][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-09-07 16:03:30.136][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:30.137][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:30.138][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:30.138][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:30.139][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:30.140][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:30.141][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:30.141][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:30.142][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-09-07 16:03:30.143][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-09-07 16:03:30.143][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:30.144][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:30.145][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:30.146][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:30.146][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-09-07 16:03:30.147][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:30.148][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:30.149][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:30.149][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:30.150][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:30.151][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:30.151][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:30.152][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:30.153][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:30.154][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:30.154][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:30.155][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:30.156][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171871699].
biodb.DEBUG[2024-09-07 16:03:30.157][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-09-07 16:03:30.157][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-09-07 16:03:30.159][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:03:30.159][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:03:30.160][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:03:30.164][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:03:30.165][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:03:30.166][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:03:30.166][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:03:30.171][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18:226.2[MolecularWeight]&retmax=3".
biodb.DEBUG[2024-09-07 16:03:30.174][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-09-07 16:03:30.175][cch$loadFileContent] Trying to load 1 files from cache: [1]: "69c19f6998e271aebdcd09a030d9b450".
biodb.TRACE[2024-09-07 16:03:30.175][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-09-07 16:03:30.177][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/69c19f6998e271aebdcd09a030d9b450.content".
biodb.DEBUG[2024-09-07 16:03:30.178][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-09-07 16:03:30.179][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:03:30.180][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:03:30.181][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:03:30.185][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:03:30.186][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:03:30.186][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:03:30.187][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:03:30.188][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:30.189][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:30.189][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:30.190][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:30.191][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:30.191][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:30.192][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:30.193][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:30.194][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-09-07 16:03:30.194][private$selectFields]
biodb.TRACE[2024-09-07 16:03:30.195][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-09-07 16:03:30.196][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-09-07 16:03:30.196][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-09-07 16:03:30.197][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:30.198][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:30.199][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:30.199][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:30.200][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:30.201][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:30.201][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:30.202][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:30.203][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-09-07 16:03:30.204][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-09-07 16:03:30.205][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:30.205][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:30.206][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:30.207][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:30.208][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-09-07 16:03:30.208][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:30.209][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:30.210][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:30.210][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:30.211][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:30.212][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:30.213][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:30.213][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:30.214][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:30.215][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:30.216][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:30.216][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:30.217][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171901106].
biodb.DEBUG[2024-09-07 16:03:30.218][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:03:30.219][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:03:30.224][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:03:30.230][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:03:30.231][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:03:30.231][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:03:30.232][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:03:30.233][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:30.234][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:30.234][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:30.235][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:30.236][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:30.236][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:30.237][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:30.238][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:30.239][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-09-07 16:03:30.239][private$selectFields]
biodb.TRACE[2024-09-07 16:03:30.240][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-09-07 16:03:30.241][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-09-07 16:03:30.241][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-09-07 16:03:30.242][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:30.243][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:30.244][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:30.244][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:30.245][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:30.246][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:30.247][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:30.247][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:30.248][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-09-07 16:03:30.249][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-09-07 16:03:30.249][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:30.250][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:30.251][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:30.252][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:30.252][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-09-07 16:03:30.253][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:30.254][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:30.255][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:30.255][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:30.256][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:30.257][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:30.257][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:30.258][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:30.259][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:30.260][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:30.260][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:30.261][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:30.262][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171901072].
biodb.DEBUG[2024-09-07 16:03:30.263][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:03:30.264][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:03:30.264][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:03:30.268][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:03:30.269][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:03:30.270][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:03:30.270][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:03:30.271][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:30.272][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:30.273][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:30.274][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:30.274][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:30.275][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:30.276][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:30.276][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:30.277][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-09-07 16:03:30.278][private$selectFields]
biodb.TRACE[2024-09-07 16:03:30.279][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-09-07 16:03:30.279][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-09-07 16:03:30.280][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-09-07 16:03:30.281][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:30.282][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:30.282][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:30.283][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:30.284][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:30.284][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:30.285][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:30.286][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:30.287][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-09-07 16:03:30.287][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-09-07 16:03:30.288][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:30.289][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:30.289][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:30.290][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:30.291][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-09-07 16:03:30.292][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:30.292][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:30.293][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:30.294][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:30.294][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:30.295][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:30.296][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:30.297][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:30.297][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:30.298][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:30.299][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:30.299][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:30.300][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171877309].
biodb.DEBUG[2024-09-07 16:03:30.301][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-09-07 16:03:30.302][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-09-07 16:03:30.319][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:03:30.320][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:03:30.320][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:03:30.325][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:03:30.325][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:03:30.326][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:03:30.327][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:03:30.332][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.23:204.45[MolecularWeight]&retmax=3".
biodb.DEBUG[2024-09-07 16:03:30.334][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-09-07 16:03:30.335][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-09-07 16:03:30.336][private$doSendRequestOnce] Sent URL is "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.23%3A204.45%5BMolecularWeight%5D&retmax=3".
biodb.TRACE[2024-09-07 16:03:30.392][doesRCurlRequestUrlExist] According to RCurl, URL https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.23%3A204.45%5BMolecularWeight%5D&retmax=3 does not exist.
biodb.TRACE[2024-09-07 16:03:30.393][getUrlRequestResult] Using base::url() for sending request.
biodb.DEBUG[2024-09-07 16:03:30.394][getUrlRequestResult] URL "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.23%3A204.45%5BMolecularWeight%5D&retmax=3" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
biodb.TRACE[2024-09-07 16:03:30.395][getBaseUrlRequestResult] Using base::url() for sending request (https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.23%3A204.45%5BMolecularWeight%5D&retmax=3).
biodb.DEBUG[2024-09-07 16:03:30.474][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2024-09-07 16:03:30.476][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/897c6c1cf86bb233833a030ee6928dbf.content"
biodb.TRACE[2024-09-07 16:03:30.479][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/897c6c1cf86bb233833a030ee6928dbf.request"
biodb.DEBUG[2024-09-07 16:03:30.481][private$loadEntries] Creating entries from ids [1]: "171873472".
biodb.DEBUG[2024-09-07 16:03:30.481][conn$getEntryContent] Get PubChem Compound entry content(s) for 1 id(s)...
biodb.TRACE[2024-09-07 16:03:30.483][cch$loadFileContent] Trying to load 1 files from cache: [1]: "171873472".
biodb.TRACE[2024-09-07 16:03:30.484][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-09-07 16:03:30.484][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-09-07 16:03:30.485][conn$getEntryContent] 0 PubChem Compound entry content(s) loaded from cache.
biodb.DEBUG[2024-09-07 16:03:30.486][conn$getEntryContent] 1 entry content(s) need to be fetched from PubChem Compound database "https://pubchem.ncbi.nlm.nih.gov/".
biodb.DEBUG[2024-09-07 16:03:30.487][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-09-07 16:03:30.488][conn$getEntryContent] 1 chunk(s) to download.
biodb.INFO [2024-09-07 16:03:30.488][private$retrieveContents] Get entry content(s) for 1 id(s)...
biodb.DEBUG[2024-09-07 16:03:30.490][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/171873472/XML".
biodb.DEBUG[2024-09-07 16:03:30.491][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-09-07 16:03:30.492][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-09-07 16:03:30.493][private$doSendRequestOnce] Sent URL is "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/171873472/XML".
biodb.TRACE[2024-09-07 16:03:30.586][getRCurlRequestResult] Using RCurl package for sending request (https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/171873472/XML).
biodb.TRACE[2024-09-07 16:03:30.728][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/171873472.xml"
biodb.DEBUG[2024-09-07 16:03:30.730][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-09-07 16:03:30.731][self$createEntryFromContent] Creating PubChem Compound entries from 1 content(s).
biodb.DEBUG[2024-09-07 16:03:30.731][self$createEntryFromContent] Parsing 1 PubChem Compound entries.
biodb.DEBUG[2024-09-07 16:03:30.733][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:03:30.733][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:03:30.734][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:03:30.738][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:03:30.739][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:03:30.740][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:03:30.740][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:03:30.743][ef$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:30.743][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:30.744][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:30.745][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:30.746][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:30.747][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:30.747][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:30.748][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:30.749][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:30.750][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:30.750][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:30.751][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:30.752][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:30.753][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:30.754][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:30.754][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:30.755][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:30.756][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:30.757][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:30.758][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:30.759][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:30.759][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:30.760][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:30.761][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:30.762][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:30.763][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:30.763][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:30.764][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:30.765][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:30.766][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:30.767][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:30.767][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:30.768][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:30.769][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:30.770][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:30.770][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:30.771][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:30.772][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:30.773][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:30.773][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:30.774][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:30.775][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:30.776][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:30.776][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:30.777][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:30.778][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:30.779][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:30.780][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:30.781][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2024-09-07 16:03:30.782][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:30.782][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:30.783][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:30.784][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-09-07 16:03:30.785][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:30.786][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:30.786][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:30.787][ef$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:03:30.788][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:03:30.789][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:30.789][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:30.790][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:03:30.791][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:03:30.792][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:30.793][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:30.793][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:03:30.794][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:03:30.795][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:30.796][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:30.797][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:03:30.798][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:03:30.798][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:30.799][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:30.800][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:03:30.801][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:03:30.802][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:30.802][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:30.803][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:03:30.804][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:03:30.805][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:30.806][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:30.807][ef$get] Asked field names are: logp.
biodb.TRACE[2024-09-07 16:03:30.808][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-09-07 16:03:30.808][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:30.809][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:30.810][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-09-07 16:03:30.811][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-09-07 16:03:30.812][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:30.812][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:30.813][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-09-07 16:03:30.814][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:30.815][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:30.815][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:30.816][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-09-07 16:03:30.817][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:30.818][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:30.819][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:30.820][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:30.820][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:30.821][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:30.822][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:30.823][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:30.824][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:30.824][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:30.825][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:30.826][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:30.827][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:30.827][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:30.828][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:30.829][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:30.830][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:30.830][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:30.831][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:30.832][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2024-09-07 16:03:30.833][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:30.834][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:30.834][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:30.835][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:30.836][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:30.837][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:30.837][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:30.838][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:30.839][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:30.840][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:30.841][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:30.841][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2024-09-07 16:03:30.842][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:30.843][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:30.843][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:30.844][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:30.845][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:30.846][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:30.847][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:30.847][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:30.848][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:30.849][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:30.850][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:30.860][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2024-09-07 16:03:30.861][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:30.862][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:30.863][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:30.864][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:30.865][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:30.865][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:30.866][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:30.867][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:30.868][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:30.868][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:30.869][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:30.870][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2024-09-07 16:03:30.871][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:30.871][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:30.872][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:30.873][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:30.874][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:30.875][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:30.875][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:30.876][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:30.877][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:30.878][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:30.878][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:30.879][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2024-09-07 16:03:30.880][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:30.881][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:30.881][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:30.882][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:30.883][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:30.884][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:30.885][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:30.886][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:30.886][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:30.887][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:30.888][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:30.889][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:03:30.890][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:03:30.891][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:30.891][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:30.892][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:30.893][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:30.894][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:30.894][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:30.895][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:30.896][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:30.897][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:30.897][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:30.898][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:30.899][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:30.900][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:30.900][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:30.901][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:30.902][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:30.903][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:30.903][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:30.904][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:30.905][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:30.906][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:30.906][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:30.907][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:30.908][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:30.909][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:30.910][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:30.910][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:30.911][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:30.912][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:30.913][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:30.913][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:30.914][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:30.915][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:30.916][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:30.917][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:30.917][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:30.918][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:30.919][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:30.919][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:30.920][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:30.921][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:30.922][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:03:30.922][self$createEntryFromContent] Accession numbers: 171873472.
biodb.DEBUG[2024-09-07 16:03:30.923][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-09-07 16:03:30.924][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:03:30.925][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:03:30.926][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:03:30.930][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:03:30.931][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:03:30.931][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:03:30.932][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:03:30.933][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:30.934][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:30.934][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:30.935][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:30.936][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:30.937][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:30.938][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:30.938][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:30.939][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-09-07 16:03:30.940][private$selectFields]
biodb.TRACE[2024-09-07 16:03:30.941][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-09-07 16:03:30.941][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-09-07 16:03:30.942][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-09-07 16:03:30.943][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:30.944][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:30.944][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:30.945][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:30.946][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:30.947][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:30.947][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:30.948][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:30.949][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-09-07 16:03:30.950][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-09-07 16:03:30.950][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:30.951][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:30.952][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:30.953][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:30.953][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-09-07 16:03:30.954][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:30.955][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:30.956][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:30.957][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:30.957][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:30.958][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:30.959][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:30.960][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:30.960][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:30.961][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:30.962][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:30.963][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:30.964][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171920215].
biodb.DEBUG[2024-09-07 16:03:30.965][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:03:30.965][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:03:30.966][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:03:30.970][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:03:30.971][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:03:30.972][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:03:30.973][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:03:30.974][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:30.974][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:30.975][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:30.976][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:30.977][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:30.977][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:30.978][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:30.979][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:30.979][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-09-07 16:03:30.980][private$selectFields]
biodb.TRACE[2024-09-07 16:03:30.981][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-09-07 16:03:30.981][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-09-07 16:03:30.982][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-09-07 16:03:30.983][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:30.984][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:30.984][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:30.985][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:30.986][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:30.987][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:30.987][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:30.988][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:30.989][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-09-07 16:03:30.990][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-09-07 16:03:30.990][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:30.991][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:30.992][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:30.993][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:30.993][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-09-07 16:03:30.994][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:30.995][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:30.996][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:30.997][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:30.997][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:30.998][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:30.999][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:31.000][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:31.001][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:31.001][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:31.002][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:31.003][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:31.004][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171904710].
biodb.DEBUG[2024-09-07 16:03:31.005][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:03:31.006][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:03:31.006][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:03:31.011][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:03:31.011][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:03:31.012][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:03:31.013][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:03:31.014][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:31.014][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:31.015][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:31.016][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:31.017][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:31.017][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:31.018][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:31.019][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:31.020][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-09-07 16:03:31.020][private$selectFields]
biodb.TRACE[2024-09-07 16:03:31.021][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-09-07 16:03:31.022][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-09-07 16:03:31.022][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-09-07 16:03:31.023][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:31.024][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:31.025][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:31.025][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:31.026][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:31.027][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:31.027][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:31.028][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:31.029][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-09-07 16:03:31.030][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-09-07 16:03:31.030][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:31.031][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:31.032][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:31.033][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:31.034][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-09-07 16:03:31.034][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:31.035][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:31.036][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:31.037][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:31.037][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:31.038][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:31.039][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:31.040][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:31.040][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:31.041][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:31.042][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:31.043][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:31.044][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171873472].
biodb.DEBUG[2024-09-07 16:03:31.045][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-09-07 16:03:31.045][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-09-07 16:03:31.047][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:03:31.048][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:03:31.049][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:03:31.053][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:03:31.054][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:03:31.055][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:03:31.056][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:03:31.061][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18:226.4[MolecularWeight]&retmax=3".
biodb.DEBUG[2024-09-07 16:03:31.064][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-09-07 16:03:31.064][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-09-07 16:03:31.066][private$doSendRequestOnce] Sent URL is "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18%3A226.4%5BMolecularWeight%5D&retmax=3".
biodb.TRACE[2024-09-07 16:03:31.123][doesRCurlRequestUrlExist] According to RCurl, URL https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18%3A226.4%5BMolecularWeight%5D&retmax=3 does not exist.
biodb.TRACE[2024-09-07 16:03:31.124][getUrlRequestResult] Using base::url() for sending request.
biodb.DEBUG[2024-09-07 16:03:31.125][getUrlRequestResult] URL "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18%3A226.4%5BMolecularWeight%5D&retmax=3" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
biodb.TRACE[2024-09-07 16:03:31.126][getBaseUrlRequestResult] Using base::url() for sending request (https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18%3A226.4%5BMolecularWeight%5D&retmax=3).
biodb.DEBUG[2024-09-07 16:03:31.257][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2024-09-07 16:03:31.259][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/56a93d3214bbb5417ad13002a40518e8.content"
biodb.TRACE[2024-09-07 16:03:31.262][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/56a93d3214bbb5417ad13002a40518e8.request"
biodb.DEBUG[2024-09-07 16:03:31.264][private$loadEntries] Creating entries from ids [2]: "171920497, 171920489".
biodb.DEBUG[2024-09-07 16:03:31.264][conn$getEntryContent] Get PubChem Compound entry content(s) for 2 id(s)...
biodb.TRACE[2024-09-07 16:03:31.266][cch$loadFileContent] Trying to load 2 files from cache: [2]: "171920497, 171920489".
biodb.TRACE[2024-09-07 16:03:31.267][cch$loadFileContent] file.exist = [2]: "FALSE, FALSE".
biodb.TRACE[2024-09-07 16:03:31.268][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-09-07 16:03:31.269][conn$getEntryContent] 0 PubChem Compound entry content(s) loaded from cache.
biodb.DEBUG[2024-09-07 16:03:31.269][conn$getEntryContent] 2 entry content(s) need to be fetched from PubChem Compound database "https://pubchem.ncbi.nlm.nih.gov/".
biodb.DEBUG[2024-09-07 16:03:31.270][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-09-07 16:03:31.271][conn$getEntryContent] 1 chunk(s) to download.
biodb.INFO [2024-09-07 16:03:31.272][private$retrieveContents] Get entry content(s) for 2 id(s)...
biodb.DEBUG[2024-09-07 16:03:31.273][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/171920497,171920489/XML".
biodb.DEBUG[2024-09-07 16:03:31.275][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-09-07 16:03:31.275][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-09-07 16:03:31.276][private$doSendRequestOnce] Sent URL is "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/171920497,171920489/XML".
biodb.TRACE[2024-09-07 16:03:31.410][getRCurlRequestResult] Using RCurl package for sending request (https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/171920497,171920489/XML).
biodb.TRACE[2024-09-07 16:03:31.577][private$doSaveContentToFile] Saving to cache [2]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/171920497.xml, /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/171920489.xml"
biodb.DEBUG[2024-09-07 16:03:31.579][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-09-07 16:03:31.580][self$createEntryFromContent] Creating PubChem Compound entries from 2 content(s).
biodb.DEBUG[2024-09-07 16:03:31.580][self$createEntryFromContent] Parsing 2 PubChem Compound entries.
biodb.DEBUG[2024-09-07 16:03:31.582][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:03:31.582][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:03:31.583][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:03:31.587][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:03:31.588][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:03:31.589][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:03:31.589][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:03:31.591][ef$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:31.592][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:31.593][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:31.593][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:31.594][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:31.595][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:31.596][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:31.597][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:31.598][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:31.598][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:31.599][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:31.600][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:31.601][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:31.602][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:31.602][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:31.603][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:31.604][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:31.605][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:31.614][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:31.615][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:31.616][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:31.617][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:31.618][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:31.619][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:31.619][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:31.620][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:31.621][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:31.621][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:31.622][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:31.623][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:31.624][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:31.625][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:31.625][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:31.626][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:31.627][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:31.627][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:31.628][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:31.629][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:31.630][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:31.631][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:31.631][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:31.632][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:31.633][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:31.634][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:31.634][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:31.635][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:31.636][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:31.637][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:31.637][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2024-09-07 16:03:31.638][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:31.639][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:31.640][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:31.641][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-09-07 16:03:31.641][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:31.642][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:31.643][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:31.644][ef$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:03:31.644][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:03:31.645][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:31.646][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:31.647][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:03:31.647][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:03:31.648][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:31.649][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:31.649][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:03:31.650][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:03:31.651][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:31.652][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:31.653][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:03:31.653][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:03:31.654][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:31.655][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:31.655][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:03:31.656][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:03:31.657][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:31.658][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:31.658][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:03:31.659][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:03:31.660][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:31.661][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:31.661][ef$get] Asked field names are: logp.
biodb.TRACE[2024-09-07 16:03:31.662][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-09-07 16:03:31.663][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:31.663][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:31.664][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-09-07 16:03:31.665][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-09-07 16:03:31.666][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:31.666][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:31.667][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-09-07 16:03:31.668][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:31.669][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:31.669][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:31.670][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-09-07 16:03:31.671][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:31.672][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:31.672][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:31.673][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:31.674][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:31.674][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:31.675][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:31.676][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:31.677][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:31.677][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:31.678][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:31.679][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:31.680][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:31.680][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:31.681][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:31.682][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:31.683][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:31.683][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:31.684][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:31.685][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2024-09-07 16:03:31.686][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:31.686][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:31.687][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:31.688][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:31.689][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:31.689][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:31.690][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:31.691][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:31.691][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:31.692][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:31.693][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:31.694][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2024-09-07 16:03:31.694][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:31.695][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:31.696][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:31.697][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:31.697][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:31.698][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:31.699][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:31.699][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:31.700][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:31.701][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:31.702][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:31.702][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2024-09-07 16:03:31.703][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:31.704][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:31.705][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:31.705][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:31.706][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:31.707][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:31.707][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:31.708][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:31.709][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:31.710][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:31.710][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:31.711][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2024-09-07 16:03:31.712][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:31.713][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:31.713][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:31.714][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:31.715][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:31.715][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:31.716][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:31.717][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:31.718][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:31.718][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:31.719][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:31.720][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2024-09-07 16:03:31.721][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:31.721][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:31.722][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:31.723][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:31.723][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:31.724][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:31.725][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:31.725][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:31.726][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:31.727][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:31.728][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:31.728][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:03:31.729][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:03:31.730][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:31.730][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:31.731][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:31.732][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:31.733][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:31.733][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:31.734][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:31.735][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:31.736][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:31.736][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:31.737][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:31.738][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:31.738][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:31.739][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:31.740][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:31.741][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:31.741][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:31.742][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:31.743][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:31.744][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:31.744][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:31.745][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:31.746][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:31.746][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:31.747][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:31.748][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:31.749][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:31.749][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:31.750][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:31.751][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:03:31.752][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:03:31.752][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:03:31.753][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:03:31.757][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:03:31.758][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:03:31.758][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:03:31.759][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:03:31.761][ef$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:31.762][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:31.763][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:31.763][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:31.764][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:31.765][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:31.766][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:31.767][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:31.768][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:31.768][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:31.769][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:31.770][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:31.771][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:31.772][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:31.772][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:31.773][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:31.774][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:31.774][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:31.775][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:31.776][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:31.777][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:31.778][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:31.778][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:31.779][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:31.780][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:31.781][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:31.781][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:31.782][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:31.783][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:31.784][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:31.784][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:31.785][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:31.786][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:31.787][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:31.787][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:31.788][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:31.789][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:31.790][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:31.790][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:31.791][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:31.792][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:31.793][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:31.793][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:31.794][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:31.795][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:31.796][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:31.797][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:31.798][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:31.798][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2024-09-07 16:03:31.799][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:31.800][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:31.800][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:31.801][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-09-07 16:03:31.802][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:31.803][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:31.804][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:31.804][ef$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:03:31.805][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:03:31.806][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:31.806][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:31.807][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:03:31.808][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:03:31.809][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:31.810][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:31.810][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:03:31.811][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:03:31.812][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:31.812][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:31.813][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:03:31.814][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:03:31.815][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:31.816][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:31.816][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:03:31.817][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:03:31.818][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:31.818][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:31.819][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:03:31.820][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:03:31.821][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:31.822][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:31.823][ef$get] Asked field names are: logp.
biodb.TRACE[2024-09-07 16:03:31.823][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-09-07 16:03:31.824][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:31.825][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:31.826][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-09-07 16:03:31.826][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-09-07 16:03:31.827][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:31.828][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:31.828][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-09-07 16:03:31.829][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:31.830][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:31.831][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:31.832][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-09-07 16:03:31.832][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:31.833][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:31.834][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:31.834][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:31.835][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:31.836][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:31.837][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:31.838][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:31.838][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:31.839][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:31.840][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:31.840][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:31.841][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:31.842][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:31.843][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:31.843][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:31.844][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:31.845][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:31.846][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:31.846][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2024-09-07 16:03:31.847][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:31.848][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:31.849][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:31.849][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:31.850][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:31.851][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:31.851][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:31.852][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:31.853][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:31.854][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:31.854][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:31.855][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2024-09-07 16:03:31.856][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:31.857][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:31.867][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:31.868][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:31.869][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:31.870][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:31.871][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:31.872][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:31.873][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:31.874][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:31.874][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:31.875][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2024-09-07 16:03:31.876][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:31.877][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:31.877][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:31.878][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:31.879][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:31.879][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:31.880][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:31.881][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:31.882][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:31.882][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:31.883][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:31.884][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2024-09-07 16:03:31.885][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:31.885][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:31.886][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:31.887][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:31.887][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:31.888][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:31.889][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:31.890][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:31.890][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:31.891][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:31.892][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:31.893][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2024-09-07 16:03:31.893][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:31.894][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:31.895][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:31.895][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:31.896][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:31.897][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:31.898][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:31.898][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:31.899][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:31.900][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:31.901][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:31.901][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:03:31.902][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:03:31.903][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:31.903][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:31.904][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:31.905][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:31.906][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:31.906][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:31.907][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:31.908][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:31.909][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:31.909][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:31.910][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:31.911][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:31.912][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:31.912][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:31.913][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:31.914][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:31.914][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:31.915][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:31.916][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:31.917][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:31.917][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:31.918][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:31.919][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:31.920][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:31.920][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:31.921][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:31.922][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:31.922][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:31.923][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:31.924][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:31.925][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:31.925][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:31.926][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:31.927][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:31.927][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:31.928][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:31.929][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:31.930][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:31.930][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:31.931][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:31.932][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:31.932][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:31.933][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:31.934][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:31.935][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:31.935][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:31.936][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:31.937][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:31.938][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:31.938][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:31.939][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:31.940][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:31.940][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:31.941][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:03:31.942][self$createEntryFromContent] Accession numbers: 171920497, 171920489.
biodb.DEBUG[2024-09-07 16:03:31.943][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-09-07 16:03:31.944][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:03:31.945][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:03:31.945][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:03:31.950][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:03:31.950][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:03:31.951][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:03:31.952][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:03:31.952][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:31.953][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:31.954][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:31.955][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:31.955][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:31.956][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:31.957][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:31.958][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:31.958][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-09-07 16:03:31.959][private$selectFields]
biodb.TRACE[2024-09-07 16:03:31.960][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-09-07 16:03:31.960][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-09-07 16:03:31.961][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-09-07 16:03:31.962][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:31.963][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:31.963][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:31.964][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:31.965][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:31.966][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:31.966][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:31.967][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:31.968][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-09-07 16:03:31.968][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-09-07 16:03:31.969][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:31.970][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:31.970][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:31.971][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:31.972][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-09-07 16:03:31.973][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:31.973][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:31.974][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:31.975][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:31.975][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:31.976][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:31.977][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:31.978][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:31.978][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:31.979][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:31.980][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:31.981][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:31.981][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171920497].
biodb.DEBUG[2024-09-07 16:03:31.982][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:03:31.983][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:03:31.984][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:03:31.988][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:03:31.989][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:03:31.990][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:03:31.990][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:03:31.991][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:31.992][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:31.992][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:31.993][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:31.994][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:31.995][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:31.995][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:31.996][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:31.997][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-09-07 16:03:31.997][private$selectFields]
biodb.TRACE[2024-09-07 16:03:31.998][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-09-07 16:03:31.999][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-09-07 16:03:32.000][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-09-07 16:03:32.000][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:32.001][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:32.002][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:32.002][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:32.003][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:32.004][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:32.005][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:32.005][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:32.006][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-09-07 16:03:32.007][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-09-07 16:03:32.007][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:32.008][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:32.009][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:32.010][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:32.010][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-09-07 16:03:32.011][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:32.012][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:32.013][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:32.013][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:32.014][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:32.015][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:32.015][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:32.016][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:32.017][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:32.018][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:32.018][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:32.019][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:32.020][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171920489].
biodb.DEBUG[2024-09-07 16:03:32.021][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:03:32.021][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:03:32.022][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:03:32.027][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:03:32.027][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:03:32.028][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:03:32.029][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:03:32.030][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:32.030][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:32.031][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:32.032][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:32.033][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:32.033][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:32.034][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:32.035][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:32.036][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-09-07 16:03:32.036][private$selectFields]
biodb.TRACE[2024-09-07 16:03:32.037][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-09-07 16:03:32.038][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-09-07 16:03:32.038][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-09-07 16:03:32.039][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:32.040][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:32.040][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:32.041][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:32.042][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:32.043][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:32.043][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:32.044][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:32.045][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-09-07 16:03:32.046][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-09-07 16:03:32.046][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:32.047][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:32.048][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:32.048][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:32.049][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-09-07 16:03:32.050][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:32.051][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:32.052][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:32.052][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:32.053][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:32.054][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:32.054][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:32.055][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:32.056][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:32.057][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:32.058][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:32.058][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:32.059][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171920436].
biodb.DEBUG[2024-09-07 16:03:32.060][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-09-07 16:03:32.061][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-09-07 16:03:32.078][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:03:32.079][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:03:32.080][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:03:32.084][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:03:32.084][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:03:32.085][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:03:32.085][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:03:32.090][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.03:204.25[MolecularWeight]&retmax=3".
biodb.DEBUG[2024-09-07 16:03:32.093][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-09-07 16:03:32.094][cch$loadFileContent] Trying to load 1 files from cache: [1]: "9701d2e1a6b096cdfd56943877648611".
biodb.TRACE[2024-09-07 16:03:32.095][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-09-07 16:03:32.096][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/9701d2e1a6b096cdfd56943877648611.content".
biodb.DEBUG[2024-09-07 16:03:32.097][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-09-07 16:03:32.098][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:03:32.099][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:03:32.099][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:03:32.104][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:03:32.104][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:03:32.105][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:03:32.106][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:03:32.107][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:32.108][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:32.108][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:32.109][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:32.110][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:32.110][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:32.111][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:32.112][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:32.113][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-09-07 16:03:32.113][private$selectFields]
biodb.TRACE[2024-09-07 16:03:32.114][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-09-07 16:03:32.115][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-09-07 16:03:32.115][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-09-07 16:03:32.116][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:32.117][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:32.117][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:32.118][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:32.119][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:32.120][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:32.120][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:32.121][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:32.127][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-09-07 16:03:32.128][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-09-07 16:03:32.129][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:32.130][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:32.131][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:32.132][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:32.132][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-09-07 16:03:32.133][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:32.134][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:32.135][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:32.135][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:32.136][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:32.137][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:32.138][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:32.138][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:32.139][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:32.140][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:32.140][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:32.141][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:32.142][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171920215].
biodb.DEBUG[2024-09-07 16:03:32.143][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:03:32.144][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:03:32.144][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:03:32.149][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:03:32.150][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:03:32.150][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:03:32.151][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:03:32.152][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:32.153][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:32.153][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:32.154][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:32.155][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:32.156][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:32.156][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:32.157][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:32.158][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-09-07 16:03:32.158][private$selectFields]
biodb.TRACE[2024-09-07 16:03:32.159][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-09-07 16:03:32.160][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-09-07 16:03:32.161][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-09-07 16:03:32.162][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:32.162][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:32.163][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:32.164][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:32.165][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:32.166][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:32.166][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:32.167][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:32.168][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-09-07 16:03:32.169][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-09-07 16:03:32.169][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:32.170][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:32.171][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:32.171][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:32.172][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-09-07 16:03:32.173][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:32.174][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:32.174][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:32.175][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:32.176][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:32.176][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:32.177][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:32.178][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:32.179][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:32.179][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:32.180][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:32.181][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:32.182][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171905266].
biodb.DEBUG[2024-09-07 16:03:32.182][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:03:32.183][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:03:32.184][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:03:32.188][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:03:32.189][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:03:32.189][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:03:32.190][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:03:32.191][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:32.192][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:32.192][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:32.193][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:32.194][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:32.195][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:32.195][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:32.196][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:32.197][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-09-07 16:03:32.197][private$selectFields]
biodb.TRACE[2024-09-07 16:03:32.198][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-09-07 16:03:32.199][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-09-07 16:03:32.200][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-09-07 16:03:32.200][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:32.201][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:32.202][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:32.203][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:32.203][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:32.204][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:32.205][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:32.205][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:32.206][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-09-07 16:03:32.207][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-09-07 16:03:32.208][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:32.208][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:32.209][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:32.210][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:32.210][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-09-07 16:03:32.211][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:32.212][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:32.213][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:32.213][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:32.214][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:32.215][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:32.216][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:32.216][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:32.217][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:32.218][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:32.219][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:32.220][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:32.221][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171905261].
biodb.DEBUG[2024-09-07 16:03:32.222][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-09-07 16:03:32.222][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-09-07 16:03:32.224][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:03:32.224][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:03:32.225][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:03:32.229][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:03:32.230][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:03:32.231][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:03:32.231][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:03:32.236][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=225.98:226.2[MolecularWeight]&retmax=3".
biodb.DEBUG[2024-09-07 16:03:32.239][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-09-07 16:03:32.240][cch$loadFileContent] Trying to load 1 files from cache: [1]: "ce15c6e17e9ed97ba06e918ccdf7a5ba".
biodb.TRACE[2024-09-07 16:03:32.241][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-09-07 16:03:32.242][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/ce15c6e17e9ed97ba06e918ccdf7a5ba.content".
biodb.DEBUG[2024-09-07 16:03:32.243][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-09-07 16:03:32.244][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:03:32.245][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:03:32.246][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:03:32.250][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:03:32.251][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:03:32.251][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:03:32.252][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:03:32.253][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:32.254][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:32.254][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:32.255][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:32.256][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:32.257][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:32.257][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:32.258][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:32.259][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-09-07 16:03:32.260][private$selectFields]
biodb.TRACE[2024-09-07 16:03:32.260][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-09-07 16:03:32.261][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-09-07 16:03:32.262][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-09-07 16:03:32.262][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:32.263][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:32.264][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:32.265][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:32.265][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:32.266][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:32.267][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:32.267][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:32.268][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-09-07 16:03:32.269][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-09-07 16:03:32.270][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:32.270][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:32.271][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:32.272][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:32.273][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-09-07 16:03:32.273][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:32.274][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:32.275][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:32.275][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:32.276][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:32.277][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:32.278][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:32.279][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:32.280][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:32.280][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:32.281][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:32.282][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:32.283][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171904731].
biodb.DEBUG[2024-09-07 16:03:32.284][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:03:32.284][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:03:32.285][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:03:32.290][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:03:32.290][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:03:32.291][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:03:32.292][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:03:32.293][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:32.293][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:32.294][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:32.295][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:32.296][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:32.296][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:32.297][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:32.298][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:32.299][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-09-07 16:03:32.299][private$selectFields]
biodb.TRACE[2024-09-07 16:03:32.300][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-09-07 16:03:32.301][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-09-07 16:03:32.302][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-09-07 16:03:32.302][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:32.303][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:32.304][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:32.305][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:32.305][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:32.306][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:32.307][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:32.308][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:32.308][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-09-07 16:03:32.309][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-09-07 16:03:32.310][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:32.311][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:32.311][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:32.312][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:32.313][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-09-07 16:03:32.313][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:32.314][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:32.315][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:32.316][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:32.316][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:32.317][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:32.318][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:32.319][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:32.319][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:32.320][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:32.321][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:32.322][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:32.323][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171904523].
biodb.DEBUG[2024-09-07 16:03:32.324][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:03:32.324][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:03:32.325][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:03:32.329][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:03:32.330][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:03:32.331][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:03:32.331][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:03:32.332][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:32.333][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:32.334][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:32.335][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:32.335][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:32.336][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:32.337][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:32.337][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:32.338][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-09-07 16:03:32.339][private$selectFields]
biodb.TRACE[2024-09-07 16:03:32.340][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-09-07 16:03:32.340][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-09-07 16:03:32.341][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-09-07 16:03:32.342][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:32.343][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:32.344][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:32.345][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:32.345][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:32.346][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:32.347][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:32.347][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:32.348][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-09-07 16:03:32.349][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-09-07 16:03:32.350][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:32.350][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:32.351][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:32.352][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:32.352][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-09-07 16:03:32.353][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:32.354][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:32.355][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:32.355][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:32.356][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:32.357][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:32.358][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:32.358][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:32.359][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:32.360][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:32.361][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:32.361][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:32.362][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171901106].
biodb.DEBUG[2024-09-07 16:03:32.363][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-09-07 16:03:32.364][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-09-07 16:03:32.382][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:03:32.382][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:03:32.383][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:03:32.387][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:03:32.387][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:03:32.388][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:03:32.389][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:03:32.401][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.23:204.25[MolecularWeight]&retmax=3".
biodb.DEBUG[2024-09-07 16:03:32.403][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-09-07 16:03:32.404][cch$loadFileContent] Trying to load 1 files from cache: [1]: "2616ca37a6f6e1bc281f8c51bc53ce81".
biodb.TRACE[2024-09-07 16:03:32.405][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-09-07 16:03:32.406][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/2616ca37a6f6e1bc281f8c51bc53ce81.content".
biodb.DEBUG[2024-09-07 16:03:32.408][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-09-07 16:03:32.409][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:03:32.410][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:03:32.410][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:03:32.414][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:03:32.415][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:03:32.416][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:03:32.416][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:03:32.417][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:32.418][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:32.419][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:32.420][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:32.421][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:32.421][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:32.422][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:32.423][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:32.423][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-09-07 16:03:32.424][private$selectFields]
biodb.TRACE[2024-09-07 16:03:32.425][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-09-07 16:03:32.426][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-09-07 16:03:32.426][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-09-07 16:03:32.427][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:32.428][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:32.429][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:32.430][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:32.430][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:32.431][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:32.432][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:32.433][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:32.433][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-09-07 16:03:32.434][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-09-07 16:03:32.435][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:32.436][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:32.436][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:32.437][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:32.438][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-09-07 16:03:32.438][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:32.439][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:32.440][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:32.441][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:32.441][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:32.442][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:32.443][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:32.444][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:32.444][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:32.445][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:32.446][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:32.447][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:32.448][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171920215].
biodb.DEBUG[2024-09-07 16:03:32.448][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:03:32.449][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:03:32.450][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:03:32.454][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:03:32.454][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:03:32.455][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:03:32.456][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:03:32.457][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:32.458][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:32.458][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:32.459][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:32.460][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:32.460][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:32.461][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:32.462][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:32.463][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-09-07 16:03:32.464][private$selectFields]
biodb.TRACE[2024-09-07 16:03:32.464][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-09-07 16:03:32.465][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-09-07 16:03:32.466][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-09-07 16:03:32.466][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:32.467][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:32.468][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:32.469][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:32.469][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:32.470][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:32.471][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:32.472][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:32.472][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-09-07 16:03:32.473][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-09-07 16:03:32.474][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:32.474][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:32.475][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:32.476][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:32.477][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-09-07 16:03:32.477][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:32.478][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:32.479][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:32.480][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:32.481][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:32.481][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:32.482][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:32.483][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:32.484][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:32.484][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:32.485][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:32.486][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:32.487][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171904710].
biodb.DEBUG[2024-09-07 16:03:32.488][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:03:32.488][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:03:32.489][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:03:32.493][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:03:32.494][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:03:32.495][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:03:32.496][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:03:32.497][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:32.497][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:32.498][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:32.499][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:32.500][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:32.500][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:32.501][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:32.502][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:32.503][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-09-07 16:03:32.504][private$selectFields]
biodb.TRACE[2024-09-07 16:03:32.504][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-09-07 16:03:32.505][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-09-07 16:03:32.506][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-09-07 16:03:32.507][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:32.507][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:32.508][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:32.509][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:32.510][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:32.510][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:32.511][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:32.512][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:32.512][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-09-07 16:03:32.513][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-09-07 16:03:32.514][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:32.515][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:32.515][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:32.516][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:32.517][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-09-07 16:03:32.518][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:32.518][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:32.519][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:32.520][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:32.521][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:32.521][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:32.522][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:32.523][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:32.524][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:32.524][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:32.525][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:32.526][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:32.527][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171871699].
biodb.DEBUG[2024-09-07 16:03:32.527][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-09-07 16:03:32.528][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-09-07 16:03:32.530][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:03:32.530][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:03:32.531][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:03:32.535][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:03:32.536][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:03:32.536][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:03:32.537][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:03:32.542][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18:226.2[MolecularWeight]&retmax=3".
biodb.DEBUG[2024-09-07 16:03:32.545][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-09-07 16:03:32.546][cch$loadFileContent] Trying to load 1 files from cache: [1]: "69c19f6998e271aebdcd09a030d9b450".
biodb.TRACE[2024-09-07 16:03:32.546][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-09-07 16:03:32.547][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/69c19f6998e271aebdcd09a030d9b450.content".
biodb.DEBUG[2024-09-07 16:03:32.549][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-09-07 16:03:32.550][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:03:32.551][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:03:32.551][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:03:32.555][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:03:32.556][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:03:32.557][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:03:32.558][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:03:32.558][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:32.559][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:32.560][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:32.561][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:32.561][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:32.562][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:32.563][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:32.564][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:32.565][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-09-07 16:03:32.565][private$selectFields]
biodb.TRACE[2024-09-07 16:03:32.566][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-09-07 16:03:32.567][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-09-07 16:03:32.567][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-09-07 16:03:32.568][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:32.569][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:32.570][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:32.570][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:32.571][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:32.572][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:32.573][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:32.573][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:32.574][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-09-07 16:03:32.575][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-09-07 16:03:32.576][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:32.576][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:32.577][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:32.578][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:32.579][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-09-07 16:03:32.579][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:32.580][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:32.581][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:32.582][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:32.582][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:32.583][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:32.584][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:32.584][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:32.585][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:32.586][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:32.587][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:32.588][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:32.589][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171901106].
biodb.DEBUG[2024-09-07 16:03:32.590][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:03:32.590][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:03:32.591][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:03:32.595][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:03:32.596][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:03:32.596][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:03:32.597][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:03:32.598][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:32.599][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:32.600][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:32.600][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:32.601][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:32.602][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:32.603][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:32.603][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:32.604][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-09-07 16:03:32.605][private$selectFields]
biodb.TRACE[2024-09-07 16:03:32.606][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-09-07 16:03:32.606][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-09-07 16:03:32.607][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-09-07 16:03:32.608][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:32.608][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:32.609][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:32.610][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:32.611][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:32.612][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:32.612][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:32.613][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:32.614][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-09-07 16:03:32.614][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-09-07 16:03:32.615][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:32.616][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:32.616][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:32.617][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:32.618][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-09-07 16:03:32.619][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:32.619][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:32.620][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:32.621][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:32.622][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:32.622][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:32.623][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:32.624][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:32.624][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:32.625][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:32.626][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:32.627][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:32.628][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171901072].
biodb.DEBUG[2024-09-07 16:03:32.629][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:03:32.629][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:03:32.630][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:03:32.634][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:03:32.635][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:03:32.635][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:03:32.636][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:03:32.637][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:32.637][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:32.638][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:32.639][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:32.640][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:32.640][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:32.641][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:32.642][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:32.643][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-09-07 16:03:32.643][private$selectFields]
biodb.TRACE[2024-09-07 16:03:32.644][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-09-07 16:03:32.645][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-09-07 16:03:32.645][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-09-07 16:03:32.646][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:32.647][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:32.648][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:32.648][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:32.649][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:32.650][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:32.650][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:32.651][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:32.652][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-09-07 16:03:32.653][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-09-07 16:03:32.653][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:32.659][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:32.660][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:32.661][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:32.662][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-09-07 16:03:32.663][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:32.664][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:32.665][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:32.666][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:32.666][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:32.667][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:32.668][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:32.669][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:32.669][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:32.670][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:32.671][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:32.671][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:32.672][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171877309].
biodb.DEBUG[2024-09-07 16:03:32.673][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-09-07 16:03:32.674][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-09-07 16:03:32.691][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:03:32.692][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:03:32.693][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:03:32.696][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:03:32.697][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:03:32.698][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:03:32.698][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:03:32.703][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.23:204.45[MolecularWeight]&retmax=3".
biodb.DEBUG[2024-09-07 16:03:32.706][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-09-07 16:03:32.706][cch$loadFileContent] Trying to load 1 files from cache: [1]: "897c6c1cf86bb233833a030ee6928dbf".
biodb.TRACE[2024-09-07 16:03:32.707][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-09-07 16:03:32.708][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/897c6c1cf86bb233833a030ee6928dbf.content".
biodb.DEBUG[2024-09-07 16:03:32.710][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-09-07 16:03:32.711][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:03:32.711][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:03:32.712][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:03:32.716][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:03:32.716][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:03:32.717][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:03:32.718][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:03:32.719][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:32.719][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:32.720][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:32.721][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:32.721][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:32.722][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:32.723][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:32.723][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:32.724][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-09-07 16:03:32.725][private$selectFields]
biodb.TRACE[2024-09-07 16:03:32.726][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-09-07 16:03:32.726][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-09-07 16:03:32.727][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-09-07 16:03:32.728][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:32.728][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:32.729][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:32.730][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:32.730][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:32.731][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:32.732][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:32.733][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:32.733][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-09-07 16:03:32.734][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-09-07 16:03:32.735][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:32.736][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:32.736][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:32.737][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:32.738][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-09-07 16:03:32.738][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:32.739][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:32.740][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:32.740][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:32.741][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:32.742][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:32.743][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:32.743][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:32.744][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:32.745][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:32.746][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:32.746][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:32.747][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171920215].
biodb.DEBUG[2024-09-07 16:03:32.748][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:03:32.749][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:03:32.749][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:03:32.753][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:03:32.754][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:03:32.755][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:03:32.755][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:03:32.756][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:32.757][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:32.758][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:32.758][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:32.759][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:32.760][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:32.760][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:32.761][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:32.762][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-09-07 16:03:32.763][private$selectFields]
biodb.TRACE[2024-09-07 16:03:32.763][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-09-07 16:03:32.764][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-09-07 16:03:32.765][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-09-07 16:03:32.765][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:32.766][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:32.767][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:32.767][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:32.768][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:32.769][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:32.770][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:32.770][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:32.771][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-09-07 16:03:32.772][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-09-07 16:03:32.772][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:32.773][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:32.774][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:32.774][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:32.775][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-09-07 16:03:32.776][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:32.777][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:32.777][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:32.778][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:32.779][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:32.780][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:32.780][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:32.781][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:32.782][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:32.782][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:32.783][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:32.784][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:32.785][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171904710].
biodb.DEBUG[2024-09-07 16:03:32.786][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:03:32.786][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:03:32.787][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:03:32.791][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:03:32.791][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:03:32.792][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:03:32.793][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:03:32.794][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:32.794][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:32.795][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:32.796][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:32.796][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:32.797][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:32.798][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:32.799][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:32.799][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-09-07 16:03:32.800][private$selectFields]
biodb.TRACE[2024-09-07 16:03:32.801][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-09-07 16:03:32.801][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-09-07 16:03:32.802][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-09-07 16:03:32.803][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:32.803][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:32.804][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:32.805][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:32.806][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:32.806][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:32.807][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:32.808][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:32.808][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-09-07 16:03:32.809][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-09-07 16:03:32.810][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:32.811][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:32.812][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:32.812][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:32.813][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-09-07 16:03:32.814][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:32.815][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:32.815][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:32.816][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:32.817][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:32.817][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:32.818][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:32.819][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:32.820][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:32.820][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:32.821][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:32.822][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:32.823][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171873472].
biodb.DEBUG[2024-09-07 16:03:32.823][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-09-07 16:03:32.824][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-09-07 16:03:32.825][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:03:32.826][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:03:32.827][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:03:32.831][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:03:32.832][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:03:32.832][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:03:32.833][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:03:32.838][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18:226.4[MolecularWeight]&retmax=3".
biodb.DEBUG[2024-09-07 16:03:32.840][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-09-07 16:03:32.841][cch$loadFileContent] Trying to load 1 files from cache: [1]: "56a93d3214bbb5417ad13002a40518e8".
biodb.TRACE[2024-09-07 16:03:32.842][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-09-07 16:03:32.843][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/56a93d3214bbb5417ad13002a40518e8.content".
biodb.DEBUG[2024-09-07 16:03:32.844][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-09-07 16:03:32.846][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:03:32.846][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:03:32.847][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:03:32.851][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:03:32.852][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:03:32.853][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:03:32.853][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:03:32.854][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:32.855][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:32.856][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:32.857][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:32.857][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:32.858][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:32.859][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:32.859][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:32.860][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-09-07 16:03:32.861][private$selectFields]
biodb.TRACE[2024-09-07 16:03:32.862][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-09-07 16:03:32.862][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-09-07 16:03:32.863][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-09-07 16:03:32.864][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:32.865][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:32.865][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:32.866][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:32.867][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:32.867][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:32.868][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:32.869][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:32.869][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-09-07 16:03:32.870][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-09-07 16:03:32.871][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:32.872][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:32.872][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:32.873][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:32.874][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-09-07 16:03:32.875][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:32.875][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:32.876][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:32.877][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:32.877][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:32.878][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:32.879][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:32.879][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:32.880][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:32.881][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:32.882][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:32.882][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:32.883][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171920497].
biodb.DEBUG[2024-09-07 16:03:32.884][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:03:32.885][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:03:32.885][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:03:32.890][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:03:32.890][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:03:32.891][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:03:32.892][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:03:32.893][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:32.893][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:32.894][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:32.895][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:32.895][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:32.896][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:32.897][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:32.898][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:32.898][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-09-07 16:03:32.899][private$selectFields]
biodb.TRACE[2024-09-07 16:03:32.900][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-09-07 16:03:32.900][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-09-07 16:03:32.901][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-09-07 16:03:32.902][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:32.903][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:32.903][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:32.904][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:32.905][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:32.905][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:32.906][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:32.907][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:32.908][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-09-07 16:03:32.908][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-09-07 16:03:32.909][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:32.910][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:32.910][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:32.911][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:32.912][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-09-07 16:03:32.918][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:32.919][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:32.920][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:32.920][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:32.921][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:32.923][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:32.924][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:32.924][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:32.925][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:32.926][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:32.926][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:32.927][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:32.928][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171920489].
biodb.DEBUG[2024-09-07 16:03:32.929][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:03:32.930][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:03:32.930][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:03:32.934][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:03:32.935][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:03:32.936][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:03:32.936][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:03:32.937][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:32.938][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:32.939][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:32.939][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:32.940][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:32.941][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:32.942][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:32.942][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:32.943][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-09-07 16:03:32.944][private$selectFields]
biodb.TRACE[2024-09-07 16:03:32.944][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-09-07 16:03:32.945][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-09-07 16:03:32.946][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-09-07 16:03:32.947][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:32.947][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:32.948][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:32.949][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:32.950][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:32.950][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:32.951][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:32.952][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:32.952][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-09-07 16:03:32.953][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-09-07 16:03:32.954][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:32.955][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:32.955][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:32.956][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:32.957][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-09-07 16:03:32.957][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:32.958][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:32.959][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:32.960][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:32.960][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:32.961][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:32.962][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:32.962][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:32.963][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:32.964][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:32.965][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:32.965][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:32.966][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171920436].
biodb.DEBUG[2024-09-07 16:03:32.967][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-09-07 16:03:32.968][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2024-09-07 16:03:32.983][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:32.984][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:32.985][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:32.985][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:32.986][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:32.987][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:32.987][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:32.988][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:32.989][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:32.990][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:32.990][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:32.991][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:32.992][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:32.993][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:32.993][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:32.994][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:32.995][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:32.995][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:32.996][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:32.997][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:32.998][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:32.998][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:32.999][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:33.000][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:33.001][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:33.001][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:33.002][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:33.003][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:33.003][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:33.004][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:33.005][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:33.006][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:03:33.008][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:03:33.009][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:03:33.010][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:03:33.014][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:03:33.014][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:03:33.015][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:03:33.016][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:03:33.021][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=203.91358306:204.13358306[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2024-09-07 16:03:33.023][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-09-07 16:03:33.023][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-09-07 16:03:33.025][private$doSendRequestOnce] Sent URL is "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=203.91358306%3A204.13358306%5BMonoisotopicMass%5D&retmax=3".
biodb.TRACE[2024-09-07 16:03:33.102][doesRCurlRequestUrlExist] According to RCurl, URL https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=203.91358306%3A204.13358306%5BMonoisotopicMass%5D&retmax=3 does not exist.
biodb.TRACE[2024-09-07 16:03:33.103][getUrlRequestResult] Using base::url() for sending request.
biodb.DEBUG[2024-09-07 16:03:33.104][getUrlRequestResult] URL "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=203.91358306%3A204.13358306%5BMonoisotopicMass%5D&retmax=3" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
biodb.TRACE[2024-09-07 16:03:33.105][getBaseUrlRequestResult] Using base::url() for sending request (https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=203.91358306%3A204.13358306%5BMonoisotopicMass%5D&retmax=3).
biodb.DEBUG[2024-09-07 16:03:33.223][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2024-09-07 16:03:33.224][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/8ad32143f99567438eba281a371befbc.content"
biodb.TRACE[2024-09-07 16:03:33.227][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/8ad32143f99567438eba281a371befbc.request"
biodb.DEBUG[2024-09-07 16:03:33.229][private$loadEntries] Creating entries from ids [1]: "171919091".
biodb.DEBUG[2024-09-07 16:03:33.229][conn$getEntryContent] Get PubChem Compound entry content(s) for 1 id(s)...
biodb.TRACE[2024-09-07 16:03:33.231][cch$loadFileContent] Trying to load 1 files from cache: [1]: "171919091".
biodb.TRACE[2024-09-07 16:03:33.231][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-09-07 16:03:33.232][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-09-07 16:03:33.233][conn$getEntryContent] 0 PubChem Compound entry content(s) loaded from cache.
biodb.DEBUG[2024-09-07 16:03:33.234][conn$getEntryContent] 1 entry content(s) need to be fetched from PubChem Compound database "https://pubchem.ncbi.nlm.nih.gov/".
biodb.DEBUG[2024-09-07 16:03:33.234][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-09-07 16:03:33.235][conn$getEntryContent] 1 chunk(s) to download.
biodb.INFO [2024-09-07 16:03:33.236][private$retrieveContents] Get entry content(s) for 1 id(s)...
biodb.DEBUG[2024-09-07 16:03:33.237][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/171919091/XML".
biodb.DEBUG[2024-09-07 16:03:33.239][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-09-07 16:03:33.239][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-09-07 16:03:33.240][private$doSendRequestOnce] Sent URL is "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/171919091/XML".
biodb.TRACE[2024-09-07 16:03:33.363][getRCurlRequestResult] Using RCurl package for sending request (https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/171919091/XML).
biodb.TRACE[2024-09-07 16:03:33.472][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/171919091.xml"
biodb.DEBUG[2024-09-07 16:03:33.474][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-09-07 16:03:33.475][self$createEntryFromContent] Creating PubChem Compound entries from 1 content(s).
biodb.DEBUG[2024-09-07 16:03:33.476][self$createEntryFromContent] Parsing 1 PubChem Compound entries.
biodb.DEBUG[2024-09-07 16:03:33.477][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:03:33.477][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:03:33.478][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:03:33.482][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:03:33.483][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:03:33.484][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:03:33.484][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:03:33.486][ef$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:33.487][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:33.488][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:33.488][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:33.489][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:33.490][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:33.491][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:33.491][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:33.492][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:33.493][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:33.494][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:33.494][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:33.495][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:33.496][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:33.497][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:33.497][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:33.498][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:33.499][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:33.500][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:33.500][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:33.501][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:33.502][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:33.503][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:33.503][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:33.504][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:33.505][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:33.505][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:33.506][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:33.507][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:33.508][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:33.509][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:33.509][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:33.510][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:33.511][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:33.511][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:33.512][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:33.513][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:33.514][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:33.515][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:33.515][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:33.516][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:33.517][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:33.517][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:33.518][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:33.519][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:33.520][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:33.520][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:33.521][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:33.522][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2024-09-07 16:03:33.523][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:33.523][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:33.524][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:33.525][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-09-07 16:03:33.526][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:33.526][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:33.527][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:33.528][ef$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:03:33.529][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:03:33.529][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:33.530][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:33.531][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:03:33.532][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:03:33.532][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:33.533][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:33.534][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:03:33.535][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:03:33.535][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:33.536][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:33.537][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:03:33.538][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:03:33.538][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:33.539][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:33.540][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:03:33.541][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:03:33.541][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:33.542][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:33.543][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:03:33.544][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:03:33.544][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:33.545][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:33.546][ef$get] Asked field names are: logp.
biodb.TRACE[2024-09-07 16:03:33.546][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-09-07 16:03:33.547][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:33.548][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:33.549][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-09-07 16:03:33.550][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-09-07 16:03:33.550][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:33.551][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:33.552][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-09-07 16:03:33.552][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:33.553][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:33.554][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:33.555][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-09-07 16:03:33.555][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:33.556][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:33.557][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:33.558][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:33.558][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:33.559][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:33.560][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:33.561][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:33.561][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:33.562][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:33.563][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:33.564][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:33.564][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:33.565][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:33.566][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:33.567][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:33.567][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:33.568][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:33.569][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:33.570][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2024-09-07 16:03:33.571][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:33.571][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:33.572][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:33.573][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:33.574][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:33.574][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:33.575][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:33.576][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:33.577][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:33.577][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:33.578][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:33.579][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2024-09-07 16:03:33.580][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:33.580][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:33.581][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:33.582][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:33.583][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:33.583][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:33.584][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:33.585][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:33.585][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:33.586][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:33.587][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:33.587][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2024-09-07 16:03:33.588][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:33.589][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:33.589][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:33.595][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:33.600][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:33.601][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:33.602][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:33.603][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:33.604][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:33.605][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:33.605][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:33.606][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2024-09-07 16:03:33.607][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:33.607][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:33.608][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:33.609][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:33.610][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:33.610][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:33.611][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:33.612][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:33.612][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:33.613][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:33.614][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:33.615][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2024-09-07 16:03:33.615][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:33.616][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:33.617][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:33.617][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:33.618][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:33.619][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:33.619][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:33.620][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:33.621][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:33.622][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:33.622][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:33.623][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:03:33.624][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:03:33.625][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:33.625][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:33.626][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:33.627][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:33.628][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:33.628][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:33.629][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:33.630][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:33.631][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:33.631][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:33.632][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:33.633][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:33.633][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:33.634][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:33.635][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:33.636][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:33.636][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:33.637][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:33.638][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:33.638][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:33.639][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:33.640][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:33.641][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:33.641][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:33.642][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:33.643][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:33.643][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:33.644][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:33.645][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:33.645][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:33.646][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:33.647][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:33.648][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:33.648][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:33.649][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:33.650][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:33.651][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:33.651][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:33.652][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:33.653][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:33.653][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:33.654][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:03:33.655][self$createEntryFromContent] Accession numbers: 171919091.
biodb.DEBUG[2024-09-07 16:03:33.656][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-09-07 16:03:33.657][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:03:33.658][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:03:33.658][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:03:33.662][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:03:33.663][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:03:33.664][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:03:33.665][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:03:33.666][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:33.666][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:33.667][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:33.668][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:33.668][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:33.669][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:33.670][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:33.671][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:33.671][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-09-07 16:03:33.672][private$selectFields]
biodb.TRACE[2024-09-07 16:03:33.673][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-09-07 16:03:33.674][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-09-07 16:03:33.674][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-09-07 16:03:33.675][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:33.676][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:33.676][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:33.677][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:33.678][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:33.679][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:33.680][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:33.680][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:33.681][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-09-07 16:03:33.682][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-09-07 16:03:33.682][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:33.683][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:33.684][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:33.685][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:33.685][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-09-07 16:03:33.686][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:33.687][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:33.687][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:33.688][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:33.689][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:33.690][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:33.690][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:33.691][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:33.692][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:33.692][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:33.693][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:33.694][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:33.695][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171920215].
biodb.DEBUG[2024-09-07 16:03:33.696][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:03:33.696][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:03:33.697][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:03:33.701][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:03:33.702][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:03:33.703][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:03:33.703][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:03:33.704][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:33.705][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:33.706][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:33.706][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:33.707][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:33.708][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:33.708][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:33.709][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:33.710][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-09-07 16:03:33.711][private$selectFields]
biodb.TRACE[2024-09-07 16:03:33.711][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-09-07 16:03:33.712][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-09-07 16:03:33.713][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-09-07 16:03:33.713][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:33.714][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:33.715][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:33.715][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:33.716][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:33.717][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:33.717][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:33.718][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:33.719][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-09-07 16:03:33.720][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-09-07 16:03:33.720][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:33.721][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:33.722][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:33.722][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:33.723][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-09-07 16:03:33.724][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:33.725][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:33.725][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:33.726][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:33.727][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:33.728][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:33.728][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:33.729][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:33.730][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:33.730][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:33.731][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:33.732][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:33.733][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171919091].
biodb.DEBUG[2024-09-07 16:03:33.734][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:03:33.734][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:03:33.735][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:03:33.739][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:03:33.740][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:03:33.740][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:03:33.741][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:03:33.742][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:33.743][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:33.743][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:33.744][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:33.745][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:33.746][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:33.746][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:33.747][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:33.748][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-09-07 16:03:33.748][private$selectFields]
biodb.TRACE[2024-09-07 16:03:33.749][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-09-07 16:03:33.750][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-09-07 16:03:33.751][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-09-07 16:03:33.751][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:33.752][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:33.753][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:33.753][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:33.754][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:33.755][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:33.756][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:33.756][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:33.757][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-09-07 16:03:33.758][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-09-07 16:03:33.758][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:33.759][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:33.760][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:33.760][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:33.761][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-09-07 16:03:33.762][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:33.763][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:33.763][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:33.764][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:33.765][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:33.766][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:33.766][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:33.767][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:33.768][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:33.768][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:33.769][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:33.770][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:33.771][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171905266].
biodb.DEBUG[2024-09-07 16:03:33.771][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-09-07 16:03:33.772][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-09-07 16:03:33.774][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:03:33.774][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:03:33.775][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:03:33.779][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:03:33.780][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:03:33.781][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:03:33.781][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:03:33.786][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=225.84897142:226.06897142[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2024-09-07 16:03:33.789][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-09-07 16:03:33.789][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-09-07 16:03:33.791][private$doSendRequestOnce] Sent URL is "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=225.84897142%3A226.06897142%5BMonoisotopicMass%5D&retmax=3".
biodb.TRACE[2024-09-07 16:03:33.847][doesRCurlRequestUrlExist] According to RCurl, URL https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=225.84897142%3A226.06897142%5BMonoisotopicMass%5D&retmax=3 does not exist.
biodb.TRACE[2024-09-07 16:03:33.848][getUrlRequestResult] Using base::url() for sending request.
biodb.DEBUG[2024-09-07 16:03:33.849][getUrlRequestResult] URL "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=225.84897142%3A226.06897142%5BMonoisotopicMass%5D&retmax=3" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
biodb.TRACE[2024-09-07 16:03:33.850][getBaseUrlRequestResult] Using base::url() for sending request (https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=225.84897142%3A226.06897142%5BMonoisotopicMass%5D&retmax=3).
biodb.DEBUG[2024-09-07 16:03:33.925][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2024-09-07 16:03:33.927][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/ead2a4c6d4c972bfbf7c3e8a0e8299c8.content"
biodb.TRACE[2024-09-07 16:03:33.930][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/ead2a4c6d4c972bfbf7c3e8a0e8299c8.request"
biodb.DEBUG[2024-09-07 16:03:33.932][private$loadEntries] Creating entries from ids [1]: "171919112".
biodb.DEBUG[2024-09-07 16:03:33.932][conn$getEntryContent] Get PubChem Compound entry content(s) for 1 id(s)...
biodb.TRACE[2024-09-07 16:03:33.934][cch$loadFileContent] Trying to load 1 files from cache: [1]: "171919112".
biodb.TRACE[2024-09-07 16:03:33.934][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-09-07 16:03:33.935][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-09-07 16:03:33.936][conn$getEntryContent] 0 PubChem Compound entry content(s) loaded from cache.
biodb.DEBUG[2024-09-07 16:03:33.937][conn$getEntryContent] 1 entry content(s) need to be fetched from PubChem Compound database "https://pubchem.ncbi.nlm.nih.gov/".
biodb.DEBUG[2024-09-07 16:03:33.937][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-09-07 16:03:33.938][conn$getEntryContent] 1 chunk(s) to download.
biodb.INFO [2024-09-07 16:03:33.939][private$retrieveContents] Get entry content(s) for 1 id(s)...
biodb.DEBUG[2024-09-07 16:03:33.940][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/171919112/XML".
biodb.DEBUG[2024-09-07 16:03:33.942][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-09-07 16:03:33.942][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-09-07 16:03:33.943][private$doSendRequestOnce] Sent URL is "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/171919112/XML".
biodb.TRACE[2024-09-07 16:03:34.029][getRCurlRequestResult] Using RCurl package for sending request (https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/171919112/XML).
biodb.TRACE[2024-09-07 16:03:34.151][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/171919112.xml"
biodb.DEBUG[2024-09-07 16:03:34.152][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-09-07 16:03:34.153][self$createEntryFromContent] Creating PubChem Compound entries from 1 content(s).
biodb.DEBUG[2024-09-07 16:03:34.154][self$createEntryFromContent] Parsing 1 PubChem Compound entries.
biodb.DEBUG[2024-09-07 16:03:34.155][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:03:34.156][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:03:34.156][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:03:34.161][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:03:34.161][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:03:34.162][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:03:34.162][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:03:34.164][ef$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:34.165][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:34.166][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:34.167][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:34.167][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:34.168][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:34.169][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:34.170][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:34.170][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:34.171][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:34.172][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:34.172][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:34.173][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:34.174][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:34.175][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:34.176][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:34.176][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:34.177][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:34.178][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:34.178][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:34.179][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:34.180][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:34.181][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:34.190][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:34.191][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:34.192][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:34.193][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:34.194][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:34.195][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:34.196][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:34.197][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:34.197][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:34.198][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:34.199][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:34.199][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:34.200][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:34.201][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:34.202][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:34.202][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:34.203][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:34.204][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:34.205][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:34.205][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:34.206][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:34.207][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:34.208][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:34.208][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:34.209][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:34.210][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2024-09-07 16:03:34.211][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:34.211][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:34.212][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:34.213][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-09-07 16:03:34.214][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:34.214][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:34.215][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:34.216][ef$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:03:34.217][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:03:34.217][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:34.218][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:34.219][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:03:34.220][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:03:34.220][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:34.221][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:34.222][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:03:34.223][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:03:34.223][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:34.224][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:34.225][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:03:34.226][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:03:34.227][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:34.227][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:34.228][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:03:34.229][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:03:34.230][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:34.230][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:34.231][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:03:34.232][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:03:34.233][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:34.233][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:34.234][ef$get] Asked field names are: logp.
biodb.TRACE[2024-09-07 16:03:34.235][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-09-07 16:03:34.235][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:34.236][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:34.237][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-09-07 16:03:34.238][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-09-07 16:03:34.238][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:34.239][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:34.240][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-09-07 16:03:34.241][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:34.241][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:34.242][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:34.243][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-09-07 16:03:34.244][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:34.244][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:34.245][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:34.246][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:34.247][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:34.247][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:34.248][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:34.249][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:34.249][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:34.250][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:34.251][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:34.252][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:34.253][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:34.253][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:34.254][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:34.255][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:34.256][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:34.256][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:34.257][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:34.258][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2024-09-07 16:03:34.259][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:34.259][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:34.260][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:34.261][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:34.262][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:34.262][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:34.263][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:34.264][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:34.264][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:34.265][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:34.266][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:34.267][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2024-09-07 16:03:34.267][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:34.268][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:34.269][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:34.269][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:34.270][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:34.271][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:34.272][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:34.272][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:34.273][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:34.274][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:34.274][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:34.275][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2024-09-07 16:03:34.276][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:34.277][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:34.277][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:34.278][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:34.279][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:34.280][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:34.280][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:34.281][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:34.282][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:34.282][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:34.283][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:34.284][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2024-09-07 16:03:34.285][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:34.285][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:34.286][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:34.287][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:34.287][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:34.288][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:34.289][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:34.290][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:34.290][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:34.291][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:34.292][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:34.292][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2024-09-07 16:03:34.293][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:34.294][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:34.295][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:34.295][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:34.296][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:34.297][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:34.297][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:34.298][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:34.299][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:34.300][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:34.300][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:34.301][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:03:34.302][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:03:34.302][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:34.303][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:34.304][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:34.305][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:34.305][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:34.306][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:34.307][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:34.308][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:34.308][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:34.309][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:34.310][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:34.311][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:34.311][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:34.312][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:34.313][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:34.313][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:34.314][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:34.315][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:34.316][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:34.316][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:34.317][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:34.318][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:34.318][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:34.319][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:34.320][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:34.321][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:34.321][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:34.322][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:34.323][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:34.323][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:34.324][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:34.325][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:34.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:34.326][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:34.327][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:34.328][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:34.329][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:34.329][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:34.330][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:34.331][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:34.331][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:34.332][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:03:34.333][self$createEntryFromContent] Accession numbers: 171919112.
biodb.DEBUG[2024-09-07 16:03:34.334][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-09-07 16:03:34.335][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:03:34.336][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:03:34.337][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:03:34.341][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:03:34.341][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:03:34.342][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:03:34.343][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:03:34.344][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:34.345][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:34.345][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:34.346][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:34.347][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:34.347][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:34.348][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:34.349][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:34.350][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-09-07 16:03:34.350][private$selectFields]
biodb.TRACE[2024-09-07 16:03:34.351][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-09-07 16:03:34.352][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-09-07 16:03:34.353][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-09-07 16:03:34.353][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:34.354][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:34.355][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:34.355][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:34.356][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:34.357][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:34.358][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:34.358][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:34.359][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-09-07 16:03:34.360][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-09-07 16:03:34.361][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:34.361][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:34.362][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:34.363][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:34.363][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-09-07 16:03:34.364][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:34.365][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:34.366][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:34.366][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:34.367][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:34.368][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:34.369][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:34.369][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:34.370][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:34.371][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:34.372][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:34.372][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:34.373][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171920436].
biodb.DEBUG[2024-09-07 16:03:34.374][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:03:34.375][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:03:34.375][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:03:34.380][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:03:34.381][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:03:34.381][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:03:34.382][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:03:34.383][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:34.384][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:34.384][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:34.385][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:34.386][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:34.386][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:34.387][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:34.388][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:34.389][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-09-07 16:03:34.389][private$selectFields]
biodb.TRACE[2024-09-07 16:03:34.390][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-09-07 16:03:34.391][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-09-07 16:03:34.392][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-09-07 16:03:34.392][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:34.393][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:34.394][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:34.394][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:34.395][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:34.396][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:34.397][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:34.397][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:34.398][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-09-07 16:03:34.399][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-09-07 16:03:34.399][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:34.400][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:34.401][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:34.401][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:34.402][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-09-07 16:03:34.403][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:34.404][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:34.404][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:34.405][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:34.406][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:34.406][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:34.407][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:34.408][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:34.409][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:34.409][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:34.410][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:34.411][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:34.412][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171919112].
biodb.DEBUG[2024-09-07 16:03:34.413][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:03:34.413][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:03:34.414][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:03:34.418][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:03:34.419][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:03:34.419][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:03:34.420][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:03:34.421][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:34.421][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:34.422][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:34.423][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:34.423][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:34.424][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:34.425][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:34.426][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:34.426][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-09-07 16:03:34.427][private$selectFields]
biodb.TRACE[2024-09-07 16:03:34.428][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-09-07 16:03:34.428][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-09-07 16:03:34.429][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-09-07 16:03:34.430][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:34.430][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:34.431][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:34.432][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:34.432][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:34.433][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:34.434][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:34.440][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:34.441][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-09-07 16:03:34.442][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-09-07 16:03:34.443][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:34.444][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:34.445][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:34.445][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:34.446][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-09-07 16:03:34.447][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:34.448][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:34.448][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:34.449][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:34.450][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:34.450][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:34.451][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:34.452][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:34.452][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:34.453][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:34.454][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:34.455][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:34.456][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171904523].
biodb.DEBUG[2024-09-07 16:03:34.456][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-09-07 16:03:34.457][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-09-07 16:03:34.474][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:03:34.475][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:03:34.476][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:03:34.479][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:03:34.480][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:03:34.481][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:03:34.481][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:03:34.486][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.11358306:204.13358306[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2024-09-07 16:03:34.489][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-09-07 16:03:34.490][cch$loadFileContent] Trying to load 1 files from cache: [1]: "1279ae7853bbae0b1c59971aee79ce72".
biodb.TRACE[2024-09-07 16:03:34.491][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-09-07 16:03:34.492][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/1279ae7853bbae0b1c59971aee79ce72.content".
biodb.DEBUG[2024-09-07 16:03:34.493][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-09-07 16:03:34.494][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:03:34.495][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:03:34.495][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:03:34.499][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:03:34.500][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:03:34.500][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:03:34.501][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:03:34.502][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:34.502][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:34.503][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:34.504][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:34.505][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:34.505][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:34.506][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:34.507][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:34.507][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-09-07 16:03:34.508][private$selectFields]
biodb.TRACE[2024-09-07 16:03:34.509][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-09-07 16:03:34.509][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-09-07 16:03:34.510][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-09-07 16:03:34.511][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:34.512][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:34.512][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:34.513][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:34.514][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:34.514][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:34.515][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:34.516][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:34.516][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-09-07 16:03:34.517][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-09-07 16:03:34.518][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:34.519][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:34.519][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:34.520][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:34.521][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-09-07 16:03:34.521][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:34.522][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:34.523][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:34.524][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:34.524][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:34.525][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:34.526][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:34.526][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:34.527][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:34.528][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:34.529][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:34.529][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:34.530][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171853852].
biodb.DEBUG[2024-09-07 16:03:34.531][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:03:34.532][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:03:34.532][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:03:34.536][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:03:34.537][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:03:34.538][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:03:34.538][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:03:34.539][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:34.540][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:34.541][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:34.541][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:34.542][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:34.543][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:34.543][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:34.544][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:34.545][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-09-07 16:03:34.546][private$selectFields]
biodb.TRACE[2024-09-07 16:03:34.546][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-09-07 16:03:34.547][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-09-07 16:03:34.548][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-09-07 16:03:34.548][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:34.549][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:34.550][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:34.550][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:34.551][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:34.552][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:34.553][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:34.553][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:34.554][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-09-07 16:03:34.555][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-09-07 16:03:34.555][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:34.556][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:34.557][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:34.557][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:34.558][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-09-07 16:03:34.559][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:34.560][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:34.560][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:34.561][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:34.562][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:34.562][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:34.563][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:34.564][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:34.565][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:34.565][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:34.566][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:34.567][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:34.568][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171846466].
biodb.DEBUG[2024-09-07 16:03:34.568][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:03:34.569][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:03:34.570][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:03:34.574][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:03:34.574][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:03:34.575][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:03:34.576][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:03:34.577][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:34.577][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:34.578][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:34.579][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:34.579][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:34.580][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:34.581][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:34.582][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:34.582][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-09-07 16:03:34.583][private$selectFields]
biodb.TRACE[2024-09-07 16:03:34.584][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-09-07 16:03:34.584][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-09-07 16:03:34.585][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-09-07 16:03:34.586][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:34.586][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:34.587][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:34.588][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:34.589][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:34.589][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:34.590][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:34.591][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:34.591][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-09-07 16:03:34.592][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-09-07 16:03:34.593][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:34.594][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:34.594][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:34.595][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:34.596][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-09-07 16:03:34.596][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:34.597][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:34.598][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:34.599][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:34.599][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:34.600][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:34.601][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:34.602][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:34.602][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:34.603][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:34.604][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:34.605][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:34.606][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171834268].
biodb.DEBUG[2024-09-07 16:03:34.606][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-09-07 16:03:34.607][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-09-07 16:03:34.609][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:03:34.609][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:03:34.610][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:03:34.614][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:03:34.615][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:03:34.615][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:03:34.616][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:03:34.621][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.04897142:226.06897142[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2024-09-07 16:03:34.623][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-09-07 16:03:34.624][cch$loadFileContent] Trying to load 1 files from cache: [1]: "6eb047352a5797ace7dc0cd8f5af7cbf".
biodb.TRACE[2024-09-07 16:03:34.625][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-09-07 16:03:34.626][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/6eb047352a5797ace7dc0cd8f5af7cbf.content".
biodb.DEBUG[2024-09-07 16:03:34.627][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-09-07 16:03:34.629][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:03:34.629][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:03:34.630][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:03:34.634][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:03:34.634][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:03:34.635][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:03:34.636][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:03:34.637][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:34.637][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:34.638][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:34.639][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:34.640][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:34.640][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:34.641][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:34.642][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:34.642][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-09-07 16:03:34.643][private$selectFields]
biodb.TRACE[2024-09-07 16:03:34.644][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-09-07 16:03:34.645][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-09-07 16:03:34.645][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-09-07 16:03:34.646][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:34.647][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:34.648][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:34.648][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:34.649][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:34.650][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:34.650][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:34.651][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:34.652][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-09-07 16:03:34.653][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-09-07 16:03:34.653][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:34.654][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:34.655][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:34.656][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:34.656][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-09-07 16:03:34.657][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:34.658][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:34.659][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:34.660][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:34.660][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:34.661][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:34.662][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:34.663][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:34.663][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:34.664][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:34.665][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:34.666][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:34.667][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171920436].
biodb.DEBUG[2024-09-07 16:03:34.667][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:03:34.668][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:03:34.669][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:03:34.673][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:03:34.673][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:03:34.674][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:03:34.675][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:03:34.676][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:34.676][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:34.677][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:34.678][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:34.679][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:34.679][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:34.680][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:34.681][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:34.681][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-09-07 16:03:34.682][private$selectFields]
biodb.TRACE[2024-09-07 16:03:34.683][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-09-07 16:03:34.683][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-09-07 16:03:34.684][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-09-07 16:03:34.685][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:34.686][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:34.686][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:34.687][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:34.688][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:34.688][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:34.689][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:34.690][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:34.691][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-09-07 16:03:34.692][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-09-07 16:03:34.698][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:34.699][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:34.699][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:34.700][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:34.701][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-09-07 16:03:34.702][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:34.703][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:34.704][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:34.705][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:34.706][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:34.706][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:34.707][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:34.708][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:34.708][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:34.709][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:34.710][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:34.711][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:34.712][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171900686].
biodb.DEBUG[2024-09-07 16:03:34.712][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:03:34.713][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:03:34.714][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:03:34.718][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:03:34.719][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:03:34.720][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:03:34.720][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:03:34.721][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:34.722][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:34.723][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:34.723][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:34.724][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:34.725][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:34.726][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:34.726][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:34.727][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-09-07 16:03:34.728][private$selectFields]
biodb.TRACE[2024-09-07 16:03:34.728][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-09-07 16:03:34.729][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-09-07 16:03:34.730][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-09-07 16:03:34.731][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:34.731][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:34.732][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:34.733][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:34.733][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:34.734][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:34.735][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:34.735][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:34.736][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-09-07 16:03:34.737][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-09-07 16:03:34.738][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:34.738][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:34.739][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:34.740][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:34.740][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-09-07 16:03:34.741][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:34.742][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:34.743][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:34.743][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:34.744][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:34.745][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:34.745][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:34.746][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:34.747][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:34.748][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:34.748][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:34.749][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:34.750][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171900685].
biodb.DEBUG[2024-09-07 16:03:34.751][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-09-07 16:03:34.751][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-09-07 16:03:34.769][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:03:34.769][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:03:34.770][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:03:34.774][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:03:34.774][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:03:34.775][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:03:34.776][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:03:34.781][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.11358306:204.33358306[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2024-09-07 16:03:34.783][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-09-07 16:03:34.784][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-09-07 16:03:34.785][private$doSendRequestOnce] Sent URL is "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.11358306%3A204.33358306%5BMonoisotopicMass%5D&retmax=3".
biodb.TRACE[2024-09-07 16:03:34.861][doesRCurlRequestUrlExist] According to RCurl, URL https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.11358306%3A204.33358306%5BMonoisotopicMass%5D&retmax=3 does not exist.
biodb.TRACE[2024-09-07 16:03:34.862][getUrlRequestResult] Using base::url() for sending request.
biodb.DEBUG[2024-09-07 16:03:34.863][getUrlRequestResult] URL "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.11358306%3A204.33358306%5BMonoisotopicMass%5D&retmax=3" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
biodb.TRACE[2024-09-07 16:03:34.864][getBaseUrlRequestResult] Using base::url() for sending request (https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.11358306%3A204.33358306%5BMonoisotopicMass%5D&retmax=3).
biodb.DEBUG[2024-09-07 16:03:34.968][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2024-09-07 16:03:34.970][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/93b38cb571769a97b3321f7f5a86241a.content"
biodb.TRACE[2024-09-07 16:03:34.973][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/93b38cb571769a97b3321f7f5a86241a.request"
biodb.DEBUG[2024-09-07 16:03:34.975][private$loadEntries] Creating entries from ids [2]: "171854777, 171852974".
biodb.DEBUG[2024-09-07 16:03:34.975][conn$getEntryContent] Get PubChem Compound entry content(s) for 2 id(s)...
biodb.TRACE[2024-09-07 16:03:34.976][cch$loadFileContent] Trying to load 2 files from cache: [2]: "171854777, 171852974".
biodb.TRACE[2024-09-07 16:03:34.977][cch$loadFileContent] file.exist = [2]: "FALSE, FALSE".
biodb.TRACE[2024-09-07 16:03:34.978][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-09-07 16:03:34.979][conn$getEntryContent] 0 PubChem Compound entry content(s) loaded from cache.
biodb.DEBUG[2024-09-07 16:03:34.980][conn$getEntryContent] 2 entry content(s) need to be fetched from PubChem Compound database "https://pubchem.ncbi.nlm.nih.gov/".
biodb.DEBUG[2024-09-07 16:03:34.981][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-09-07 16:03:34.981][conn$getEntryContent] 1 chunk(s) to download.
biodb.INFO [2024-09-07 16:03:34.982][private$retrieveContents] Get entry content(s) for 2 id(s)...
biodb.DEBUG[2024-09-07 16:03:34.983][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/171854777,171852974/XML".
biodb.DEBUG[2024-09-07 16:03:34.985][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-09-07 16:03:34.986][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-09-07 16:03:34.987][private$doSendRequestOnce] Sent URL is "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/171854777,171852974/XML".
biodb.TRACE[2024-09-07 16:03:35.136][getRCurlRequestResult] Using RCurl package for sending request (https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/171854777,171852974/XML).
biodb.TRACE[2024-09-07 16:03:36.468][private$doSaveContentToFile] Saving to cache [2]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/171854777.xml, /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/171852974.xml"
biodb.DEBUG[2024-09-07 16:03:36.470][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-09-07 16:03:36.471][self$createEntryFromContent] Creating PubChem Compound entries from 2 content(s).
biodb.DEBUG[2024-09-07 16:03:36.472][self$createEntryFromContent] Parsing 2 PubChem Compound entries.
biodb.DEBUG[2024-09-07 16:03:36.474][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:03:36.474][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:03:36.475][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:03:36.479][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:03:36.480][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:03:36.481][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:03:36.481][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:03:36.483][ef$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:36.484][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:36.485][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:36.486][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:36.487][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:36.488][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:36.488][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:36.489][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:36.490][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:36.491][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:36.491][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:36.492][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:36.493][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:36.494][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:36.495][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:36.495][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:36.496][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:36.497][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:36.498][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:36.498][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:36.499][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:36.500][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:36.501][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:36.502][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:36.503][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:36.504][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:36.504][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:36.505][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:36.506][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:36.507][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:36.508][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:36.508][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:36.509][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:36.510][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:36.511][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:36.511][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:36.512][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:36.513][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:36.514][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:36.514][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:36.515][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:36.516][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:36.517][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:36.517][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:36.518][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:36.519][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:36.520][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:36.521][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:36.522][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2024-09-07 16:03:36.522][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:36.523][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:36.524][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:36.525][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-09-07 16:03:36.525][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:36.526][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:36.527][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:36.528][ef$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:03:36.528][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:03:36.529][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:36.530][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:36.531][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:03:36.532][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:03:36.532][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:36.533][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:36.534][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:03:36.535][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:03:36.535][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:36.536][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:36.537][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:03:36.538][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:03:36.539][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:36.539][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:36.540][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:03:36.541][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:03:36.542][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:36.542][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:36.543][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:03:36.544][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:03:36.545][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:36.545][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:36.546][ef$get] Asked field names are: logp.
biodb.TRACE[2024-09-07 16:03:36.547][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-09-07 16:03:36.548][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:36.549][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:36.550][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-09-07 16:03:36.550][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-09-07 16:03:36.551][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:36.552][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:36.553][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-09-07 16:03:36.553][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:36.554][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:36.555][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:36.556][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-09-07 16:03:36.557][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:36.557][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:36.558][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:36.559][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:36.560][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:36.560][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:36.561][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:36.562][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:36.563][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:36.563][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:36.564][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:36.565][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:36.565][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:36.566][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:36.567][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:36.568][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:36.569][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:36.569][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:36.570][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:36.571][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2024-09-07 16:03:36.572][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:36.572][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:36.573][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:36.574][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:36.575][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:36.575][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:36.576][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:36.577][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:36.578][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:36.578][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:36.579][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:36.580][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2024-09-07 16:03:36.581][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:36.581][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:36.582][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:36.583][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:36.584][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:36.584][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:36.585][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:36.586][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:36.587][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:36.587][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:36.588][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:36.589][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2024-09-07 16:03:36.590][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:36.590][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:36.591][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:36.592][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:36.593][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:36.593][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:36.594][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:36.595][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:36.596][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:36.596][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:36.597][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:36.598][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2024-09-07 16:03:36.599][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:36.599][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:36.600][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:36.601][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:36.602][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:36.602][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:36.603][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:36.604][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:36.604][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:36.605][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:36.606][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:36.607][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2024-09-07 16:03:36.607][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:36.608][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:36.609][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:36.610][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:36.610][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:36.620][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:36.621][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:36.622][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:36.623][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:36.624][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:36.625][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:36.626][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:03:36.627][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:03:36.628][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:36.628][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:36.629][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:36.630][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:36.631][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:36.631][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:36.632][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:36.633][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:36.634][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:36.634][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:36.635][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:36.636][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:36.637][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:36.637][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:36.638][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:36.639][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:36.640][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:36.640][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:36.641][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:36.642][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:36.643][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:36.643][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:36.644][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:36.645][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:36.646][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:36.646][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:36.647][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:36.648][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:36.649][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:36.650][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:03:36.651][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:03:36.651][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:03:36.652][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:03:36.656][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:03:36.657][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:03:36.658][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:03:36.658][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:03:36.661][ef$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:36.662][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:36.663][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:36.663][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:36.664][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:36.665][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:36.666][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:36.667][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:36.667][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:36.668][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:36.669][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:36.670][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:36.671][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:36.671][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:36.672][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:36.673][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:36.674][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:36.674][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:36.675][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:36.676][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:36.677][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:36.678][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:36.678][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:36.679][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:36.680][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:36.681][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:36.681][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:36.682][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:36.683][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:36.684][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:36.685][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:36.685][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:36.686][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:36.687][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:36.688][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:36.688][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:36.690][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:36.690][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:36.691][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:36.692][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:36.692][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:36.693][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:36.694][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:36.695][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:36.696][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:36.697][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:36.697][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:36.698][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:36.699][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2024-09-07 16:03:36.700][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:36.700][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:36.701][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:36.702][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-09-07 16:03:36.703][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:36.704][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:36.704][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:36.705][ef$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:03:36.706][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:03:36.707][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:36.707][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:36.708][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:03:36.709][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:03:36.710][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:36.711][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:36.711][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:03:36.712][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:03:36.713][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:36.714][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:36.715][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:03:36.715][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:03:36.716][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:36.717][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:36.718][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:03:36.718][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:03:36.719][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:36.720][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:36.721][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:03:36.722][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:03:36.723][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:36.723][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:36.724][ef$get] Asked field names are: logp.
biodb.TRACE[2024-09-07 16:03:36.725][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-09-07 16:03:36.726][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:36.726][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:36.727][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-09-07 16:03:36.728][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-09-07 16:03:36.729][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:36.729][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:36.730][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-09-07 16:03:36.731][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:36.732][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:36.732][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:36.733][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-09-07 16:03:36.734][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:36.735][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:36.736][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:36.736][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:36.737][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:36.738][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:36.738][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:36.739][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:36.740][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:36.741][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:36.741][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:36.742][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:36.743][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:36.744][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:36.744][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:36.745][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:36.746][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:36.747][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:36.748][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:36.748][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2024-09-07 16:03:36.749][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:36.750][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:36.751][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:36.752][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:36.752][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:36.753][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:36.754][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:36.754][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:36.755][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:36.756][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:36.757][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:36.757][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2024-09-07 16:03:36.758][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:36.759][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:36.760][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:36.760][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:36.761][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:36.762][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:36.763][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:36.763][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:36.764][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:36.765][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:36.765][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:36.766][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2024-09-07 16:03:36.767][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:36.768][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:36.769][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:36.769][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:36.770][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:36.771][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:36.771][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:36.772][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:36.773][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:36.774][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:36.774][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:36.775][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2024-09-07 16:03:36.776][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:36.777][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:36.778][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:36.778][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:36.779][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:36.780][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:36.780][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:36.781][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:36.782][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:36.783][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:36.784][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:36.784][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2024-09-07 16:03:36.785][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:36.786][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:36.786][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:36.787][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:36.788][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:36.789][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:36.789][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:36.790][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:36.791][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:36.792][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:36.792][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:36.793][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:03:36.794][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:03:36.795][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:36.795][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:36.796][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:36.797][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:36.798][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:36.798][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:36.799][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:36.800][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:36.801][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:36.801][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:36.802][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:36.803][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:36.804][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:36.804][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:36.805][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:36.806][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:36.807][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:36.807][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:36.808][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:36.809][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:36.810][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:36.810][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:36.811][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:36.812][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:36.813][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:36.813][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:36.814][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:36.815][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:36.816][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:36.816][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:36.817][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:36.818][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:36.819][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:36.819][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:36.820][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:36.821][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:36.822][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:36.823][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:36.823][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:36.824][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:36.825][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:36.826][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:36.827][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:36.827][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:36.828][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:36.829][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:36.830][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:36.830][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:36.831][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:36.832][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:36.833][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:36.833][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:36.834][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:36.835][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:03:36.836][self$createEntryFromContent] Accession numbers: 171854777, 171852974.
biodb.DEBUG[2024-09-07 16:03:36.837][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-09-07 16:03:36.838][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:03:36.839][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:03:36.839][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:03:36.844][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:03:36.844][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:03:36.845][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:03:36.846][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:03:36.847][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:36.848][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:36.848][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:36.849][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:36.850][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:36.851][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:36.852][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:36.852][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:36.853][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-09-07 16:03:36.854][private$selectFields]
biodb.TRACE[2024-09-07 16:03:36.854][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-09-07 16:03:36.855][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-09-07 16:03:36.856][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-09-07 16:03:36.856][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:36.857][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:36.858][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:36.859][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:36.859][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:36.860][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:36.861][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:36.862][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:36.862][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-09-07 16:03:36.863][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-09-07 16:03:36.864][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:36.865][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:36.865][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:36.866][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:36.867][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-09-07 16:03:36.867][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:36.868][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:36.869][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:36.869][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:36.870][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:36.871][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:36.872][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:36.872][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:36.873][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:36.879][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:36.880][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:36.881][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:36.882][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171854777].
biodb.DEBUG[2024-09-07 16:03:36.884][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:03:36.884][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:03:36.885][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:03:36.889][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:03:36.890][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:03:36.891][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:03:36.892][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:03:36.892][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:36.893][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:36.894][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:36.895][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:36.895][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:36.896][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:36.897][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:36.898][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:36.899][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-09-07 16:03:36.899][private$selectFields]
biodb.TRACE[2024-09-07 16:03:36.900][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-09-07 16:03:36.901][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-09-07 16:03:36.901][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-09-07 16:03:36.902][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:36.903][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:36.904][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:36.904][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:36.905][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:36.906][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:36.907][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:36.907][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:36.908][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-09-07 16:03:36.909][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-09-07 16:03:36.910][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:36.911][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:36.912][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:36.912][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:36.913][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-09-07 16:03:36.914][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:36.915][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:36.915][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:36.916][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:36.917][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:36.918][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:36.918][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:36.919][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:36.920][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:36.920][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:36.921][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:36.922][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:36.923][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171853852].
biodb.DEBUG[2024-09-07 16:03:36.924][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:03:36.924][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:03:36.925][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:03:36.929][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:03:36.930][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:03:36.931][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:03:36.931][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:03:36.932][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:36.933][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:36.934][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:36.934][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:36.935][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:36.936][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:36.937][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:36.937][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:36.938][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-09-07 16:03:36.939][private$selectFields]
biodb.TRACE[2024-09-07 16:03:36.940][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-09-07 16:03:36.940][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-09-07 16:03:36.941][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-09-07 16:03:36.942][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:36.942][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:36.943][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:36.944][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:36.945][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:36.945][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:36.946][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:36.947][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:36.947][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-09-07 16:03:36.948][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-09-07 16:03:36.949][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:36.950][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:36.950][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:36.951][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:36.952][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-09-07 16:03:36.953][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:36.953][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:36.954][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:36.955][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:36.956][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:36.956][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:36.957][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:36.958][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:36.959][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:36.959][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:36.960][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:36.961][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:36.962][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171852974].
biodb.DEBUG[2024-09-07 16:03:36.963][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-09-07 16:03:36.963][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-09-07 16:03:36.965][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:03:36.965][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:03:36.966][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:03:36.970][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:03:36.971][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:03:36.972][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:03:36.972][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:03:36.978][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.04897142:226.26897142[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2024-09-07 16:03:36.980][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-09-07 16:03:36.981][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-09-07 16:03:36.982][private$doSendRequestOnce] Sent URL is "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.04897142%3A226.26897142%5BMonoisotopicMass%5D&retmax=3".
biodb.TRACE[2024-09-07 16:03:37.038][doesRCurlRequestUrlExist] According to RCurl, URL https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.04897142%3A226.26897142%5BMonoisotopicMass%5D&retmax=3 does not exist.
biodb.TRACE[2024-09-07 16:03:37.039][getUrlRequestResult] Using base::url() for sending request.
biodb.DEBUG[2024-09-07 16:03:37.040][getUrlRequestResult] URL "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.04897142%3A226.26897142%5BMonoisotopicMass%5D&retmax=3" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
biodb.TRACE[2024-09-07 16:03:37.041][getBaseUrlRequestResult] Using base::url() for sending request (https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.04897142%3A226.26897142%5BMonoisotopicMass%5D&retmax=3).
biodb.DEBUG[2024-09-07 16:03:37.166][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2024-09-07 16:03:37.168][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/405cf707472983a89dc9e0092ca888ad.content"
biodb.TRACE[2024-09-07 16:03:37.170][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/405cf707472983a89dc9e0092ca888ad.request"
biodb.DEBUG[2024-09-07 16:03:37.172][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-09-07 16:03:37.173][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:03:37.174][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:03:37.175][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:03:37.179][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:03:37.180][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:03:37.180][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:03:37.181][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:03:37.182][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:37.183][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:37.183][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:37.184][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:37.185][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:37.186][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:37.186][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:37.187][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:37.188][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-09-07 16:03:37.189][private$selectFields]
biodb.TRACE[2024-09-07 16:03:37.189][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-09-07 16:03:37.190][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-09-07 16:03:37.191][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-09-07 16:03:37.192][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:37.192][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:37.193][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:37.194][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:37.195][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:37.195][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:37.196][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:37.197][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:37.197][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-09-07 16:03:37.198][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-09-07 16:03:37.199][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:37.200][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:37.200][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:37.201][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:37.202][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-09-07 16:03:37.202][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:37.203][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:37.204][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:37.204][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:37.205][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:37.206][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:37.207][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:37.207][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:37.208][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:37.209][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:37.209][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:37.210][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:37.211][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171920497].
biodb.DEBUG[2024-09-07 16:03:37.212][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:03:37.213][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:03:37.213][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:03:37.217][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:03:37.218][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:03:37.219][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:03:37.219][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:03:37.220][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:37.221][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:37.222][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:37.223][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:37.223][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:37.224][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:37.225][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:37.225][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:37.226][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-09-07 16:03:37.227][private$selectFields]
biodb.TRACE[2024-09-07 16:03:37.228][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-09-07 16:03:37.228][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-09-07 16:03:37.229][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-09-07 16:03:37.230][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:37.230][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:37.231][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:37.232][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:37.233][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:37.233][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:37.234][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:37.235][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:37.236][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-09-07 16:03:37.236][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-09-07 16:03:37.237][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:37.238][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:37.238][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:37.239][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:37.240][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-09-07 16:03:37.241][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:37.241][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:37.242][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:37.243][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:37.244][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:37.244][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:37.245][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:37.246][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:37.246][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:37.247][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:37.248][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:37.248][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:37.250][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171920489].
biodb.DEBUG[2024-09-07 16:03:37.250][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:03:37.251][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:03:37.252][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:03:37.256][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:03:37.257][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:03:37.257][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:03:37.258][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:03:37.259][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:37.260][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:37.260][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:37.261][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:37.262][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:37.263][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:37.263][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:37.264][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:37.265][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-09-07 16:03:37.266][private$selectFields]
biodb.TRACE[2024-09-07 16:03:37.266][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-09-07 16:03:37.267][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-09-07 16:03:37.268][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-09-07 16:03:37.268][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:37.269][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:37.270][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:37.270][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:37.271][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:37.272][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:37.273][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:37.274][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:37.275][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-09-07 16:03:37.275][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-09-07 16:03:37.276][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:37.277][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:37.277][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:37.278][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:37.279][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-09-07 16:03:37.280][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:37.280][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:37.281][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:37.282][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:37.282][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:37.283][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:37.284][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:37.285][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:37.286][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:37.286][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:37.287][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:37.288][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:37.289][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171920436].
biodb.DEBUG[2024-09-07 16:03:37.289][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-09-07 16:03:37.290][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-09-07 16:03:37.308][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:03:37.309][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:03:37.309][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:03:37.313][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:03:37.314][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:03:37.314][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:03:37.315][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:03:37.328][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=203.91358306:204.13358306[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2024-09-07 16:03:37.331][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-09-07 16:03:37.332][cch$loadFileContent] Trying to load 1 files from cache: [1]: "8ad32143f99567438eba281a371befbc".
biodb.TRACE[2024-09-07 16:03:37.333][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-09-07 16:03:37.334][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/8ad32143f99567438eba281a371befbc.content".
biodb.DEBUG[2024-09-07 16:03:37.335][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-09-07 16:03:37.337][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:03:37.337][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:03:37.338][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:03:37.342][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:03:37.343][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:03:37.343][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:03:37.344][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:03:37.345][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:37.346][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:37.346][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:37.347][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:37.348][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:37.348][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:37.349][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:37.350][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:37.351][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-09-07 16:03:37.351][private$selectFields]
biodb.TRACE[2024-09-07 16:03:37.352][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-09-07 16:03:37.353][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-09-07 16:03:37.354][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-09-07 16:03:37.354][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:37.355][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:37.356][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:37.357][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:37.357][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:37.358][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:37.359][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:37.359][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:37.360][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-09-07 16:03:37.361][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-09-07 16:03:37.362][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:37.362][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:37.363][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:37.364][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:37.364][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-09-07 16:03:37.365][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:37.366][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:37.367][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:37.368][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:37.368][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:37.369][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:37.370][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:37.371][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:37.372][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:37.372][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:37.373][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:37.374][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:37.375][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171920215].
biodb.DEBUG[2024-09-07 16:03:37.376][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:03:37.376][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:03:37.377][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:03:37.381][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:03:37.382][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:03:37.382][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:03:37.383][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:03:37.384][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:37.385][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:37.385][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:37.386][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:37.387][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:37.388][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:37.388][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:37.389][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:37.390][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-09-07 16:03:37.391][private$selectFields]
biodb.TRACE[2024-09-07 16:03:37.392][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-09-07 16:03:37.392][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-09-07 16:03:37.393][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-09-07 16:03:37.394][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:37.395][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:37.395][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:37.396][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:37.397][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:37.397][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:37.398][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:37.399][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:37.400][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-09-07 16:03:37.400][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-09-07 16:03:37.401][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:37.402][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:37.403][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:37.403][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:37.404][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-09-07 16:03:37.405][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:37.406][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:37.406][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:37.407][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:37.408][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:37.409][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:37.409][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:37.410][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:37.411][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:37.412][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:37.412][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:37.413][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:37.414][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171919091].
biodb.DEBUG[2024-09-07 16:03:37.415][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:03:37.416][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:03:37.416][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:03:37.421][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:03:37.421][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:03:37.422][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:03:37.422][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:03:37.423][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:37.424][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:37.425][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:37.425][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:37.426][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:37.427][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:37.428][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:37.428][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:37.429][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-09-07 16:03:37.430][private$selectFields]
biodb.TRACE[2024-09-07 16:03:37.430][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-09-07 16:03:37.431][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-09-07 16:03:37.432][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-09-07 16:03:37.433][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:37.433][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:37.434][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:37.435][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:37.436][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:37.436][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:37.437][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:37.438][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:37.438][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-09-07 16:03:37.439][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-09-07 16:03:37.440][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:37.441][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:37.441][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:37.442][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:37.443][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-09-07 16:03:37.443][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:37.444][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:37.445][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:37.445][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:37.446][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:37.447][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:37.448][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:37.448][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:37.449][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:37.450][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:37.450][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:37.451][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:37.452][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171905266].
biodb.DEBUG[2024-09-07 16:03:37.453][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-09-07 16:03:37.453][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-09-07 16:03:37.455][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:03:37.456][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:03:37.457][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:03:37.461][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:03:37.461][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:03:37.462][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:03:37.463][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:03:37.468][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=225.84897142:226.06897142[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2024-09-07 16:03:37.470][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-09-07 16:03:37.471][cch$loadFileContent] Trying to load 1 files from cache: [1]: "ead2a4c6d4c972bfbf7c3e8a0e8299c8".
biodb.TRACE[2024-09-07 16:03:37.472][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-09-07 16:03:37.473][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/ead2a4c6d4c972bfbf7c3e8a0e8299c8.content".
biodb.DEBUG[2024-09-07 16:03:37.474][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-09-07 16:03:37.475][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:03:37.476][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:03:37.476][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:03:37.480][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:03:37.481][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:03:37.482][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:03:37.482][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:03:37.483][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:37.484][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:37.485][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:37.485][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:37.486][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:37.487][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:37.488][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:37.488][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:37.489][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-09-07 16:03:37.490][private$selectFields]
biodb.TRACE[2024-09-07 16:03:37.490][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-09-07 16:03:37.491][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-09-07 16:03:37.492][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-09-07 16:03:37.493][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:37.493][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:37.494][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:37.495][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:37.495][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:37.496][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:37.497][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:37.498][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:37.498][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-09-07 16:03:37.499][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-09-07 16:03:37.500][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:37.500][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:37.501][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:37.502][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:37.502][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-09-07 16:03:37.503][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:37.504][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:37.505][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:37.505][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:37.506][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:37.507][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:37.508][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:37.508][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:37.509][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:37.510][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:37.510][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:37.511][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:37.512][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171920436].
biodb.DEBUG[2024-09-07 16:03:37.513][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:03:37.513][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:03:37.514][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:03:37.518][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:03:37.519][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:03:37.519][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:03:37.520][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:03:37.521][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:37.522][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:37.522][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:37.523][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:37.524][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:37.525][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:37.525][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:37.526][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:37.527][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-09-07 16:03:37.527][private$selectFields]
biodb.TRACE[2024-09-07 16:03:37.528][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-09-07 16:03:37.529][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-09-07 16:03:37.529][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-09-07 16:03:37.530][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:37.531][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:37.532][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:37.532][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:37.533][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:37.534][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:37.534][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:37.535][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:37.536][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-09-07 16:03:37.536][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-09-07 16:03:37.537][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:37.538][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:37.539][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:37.539][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:37.540][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-09-07 16:03:37.541][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:37.541][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:37.542][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:37.543][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:37.544][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:37.544][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:37.545][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:37.546][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:37.546][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:37.547][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:37.548][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:37.549][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:37.550][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171919112].
biodb.DEBUG[2024-09-07 16:03:37.550][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:03:37.551][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:03:37.552][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:03:37.556][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:03:37.557][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:03:37.557][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:03:37.558][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:03:37.559][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:37.560][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:37.560][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:37.561][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:37.562][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:37.562][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:37.563][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:37.564][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:37.565][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-09-07 16:03:37.565][private$selectFields]
biodb.TRACE[2024-09-07 16:03:37.566][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-09-07 16:03:37.567][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-09-07 16:03:37.567][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-09-07 16:03:37.568][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:37.569][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:37.569][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:37.570][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:37.571][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:37.571][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:37.572][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:37.573][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:37.574][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-09-07 16:03:37.580][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-09-07 16:03:37.581][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:37.581][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:37.582][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:37.583][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:37.584][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-09-07 16:03:37.585][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:37.586][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:37.587][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:37.587][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:37.588][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:37.589][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:37.589][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:37.590][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:37.591][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:37.592][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:37.592][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:37.593][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:37.594][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171904523].
biodb.DEBUG[2024-09-07 16:03:37.595][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-09-07 16:03:37.595][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-09-07 16:03:37.613][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:03:37.614][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:03:37.614][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:03:37.618][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:03:37.619][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:03:37.620][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:03:37.620][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:03:37.625][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.11358306:204.13358306[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2024-09-07 16:03:37.627][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-09-07 16:03:37.629][cch$loadFileContent] Trying to load 1 files from cache: [1]: "1279ae7853bbae0b1c59971aee79ce72".
biodb.TRACE[2024-09-07 16:03:37.629][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-09-07 16:03:37.630][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/1279ae7853bbae0b1c59971aee79ce72.content".
biodb.DEBUG[2024-09-07 16:03:37.632][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-09-07 16:03:37.633][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:03:37.633][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:03:37.634][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:03:37.638][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:03:37.639][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:03:37.639][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:03:37.640][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:03:37.641][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:37.642][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:37.642][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:37.643][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:37.644][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:37.644][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:37.645][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:37.646][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:37.646][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-09-07 16:03:37.647][private$selectFields]
biodb.TRACE[2024-09-07 16:03:37.648][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-09-07 16:03:37.648][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-09-07 16:03:37.649][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-09-07 16:03:37.650][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:37.651][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:37.651][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:37.652][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:37.653][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:37.653][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:37.654][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:37.655][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:37.656][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-09-07 16:03:37.656][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-09-07 16:03:37.657][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:37.658][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:37.659][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:37.659][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:37.660][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-09-07 16:03:37.661][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:37.661][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:37.662][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:37.663][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:37.664][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:37.664][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:37.665][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:37.666][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:37.666][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:37.667][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:37.668][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:37.669][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:37.670][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171853852].
biodb.DEBUG[2024-09-07 16:03:37.670][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:03:37.671][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:03:37.672][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:03:37.676][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:03:37.677][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:03:37.677][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:03:37.678][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:03:37.679][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:37.679][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:37.680][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:37.681][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:37.682][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:37.682][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:37.683][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:37.684][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:37.684][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-09-07 16:03:37.685][private$selectFields]
biodb.TRACE[2024-09-07 16:03:37.686][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-09-07 16:03:37.687][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-09-07 16:03:37.687][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-09-07 16:03:37.688][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:37.689][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:37.689][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:37.690][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:37.691][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:37.692][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:37.692][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:37.693][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:37.694][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-09-07 16:03:37.695][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-09-07 16:03:37.695][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:37.696][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:37.697][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:37.697][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:37.698][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-09-07 16:03:37.699][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:37.700][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:37.700][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:37.701][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:37.702][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:37.703][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:37.703][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:37.704][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:37.705][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:37.705][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:37.706][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:37.707][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:37.708][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171846466].
biodb.DEBUG[2024-09-07 16:03:37.709][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:03:37.709][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:03:37.710][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:03:37.714][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:03:37.715][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:03:37.715][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:03:37.716][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:03:37.717][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:37.718][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:37.718][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:37.719][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:37.720][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:37.720][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:37.721][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:37.722][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:37.723][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-09-07 16:03:37.723][private$selectFields]
biodb.TRACE[2024-09-07 16:03:37.724][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-09-07 16:03:37.725][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-09-07 16:03:37.725][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-09-07 16:03:37.726][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:37.727][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:37.727][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:37.728][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:37.729][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:37.729][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:37.730][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:37.731][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:37.732][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-09-07 16:03:37.732][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-09-07 16:03:37.733][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:37.734][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:37.734][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:37.735][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:37.736][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-09-07 16:03:37.736][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:37.737][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:37.738][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:37.739][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:37.739][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:37.740][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:37.741][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:37.741][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:37.742][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:37.743][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:37.743][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:37.744][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:37.745][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171834268].
biodb.DEBUG[2024-09-07 16:03:37.746][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-09-07 16:03:37.746][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-09-07 16:03:37.748][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:03:37.749][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:03:37.749][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:03:37.753][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:03:37.754][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:03:37.755][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:03:37.755][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:03:37.760][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.04897142:226.06897142[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2024-09-07 16:03:37.762][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-09-07 16:03:37.763][cch$loadFileContent] Trying to load 1 files from cache: [1]: "6eb047352a5797ace7dc0cd8f5af7cbf".
biodb.TRACE[2024-09-07 16:03:37.764][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-09-07 16:03:37.765][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/6eb047352a5797ace7dc0cd8f5af7cbf.content".
biodb.DEBUG[2024-09-07 16:03:37.767][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-09-07 16:03:37.768][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:03:37.769][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:03:37.769][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:03:37.773][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:03:37.774][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:03:37.775][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:03:37.775][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:03:37.776][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:37.777][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:37.778][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:37.778][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:37.779][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:37.780][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:37.781][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:37.781][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:37.782][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-09-07 16:03:37.783][private$selectFields]
biodb.TRACE[2024-09-07 16:03:37.783][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-09-07 16:03:37.784][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-09-07 16:03:37.785][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-09-07 16:03:37.785][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:37.786][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:37.787][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:37.787][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:37.788][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:37.789][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:37.790][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:37.790][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:37.791][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-09-07 16:03:37.792][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-09-07 16:03:37.792][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:37.793][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:37.794][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:37.795][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:37.795][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-09-07 16:03:37.796][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:37.797][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:37.798][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:37.798][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:37.799][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:37.800][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:37.800][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:37.801][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:37.802][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:37.803][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:37.803][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:37.804][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:37.805][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171920436].
biodb.DEBUG[2024-09-07 16:03:37.806][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:03:37.806][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:03:37.807][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:03:37.811][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:03:37.812][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:03:37.812][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:03:37.813][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:03:37.814][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:37.814][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:37.815][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:37.816][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:37.816][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:37.817][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:37.818][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:37.819][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:37.819][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-09-07 16:03:37.820][private$selectFields]
biodb.TRACE[2024-09-07 16:03:37.821][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-09-07 16:03:37.821][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-09-07 16:03:37.822][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-09-07 16:03:37.823][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:37.824][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:37.825][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:37.825][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:37.826][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:37.827][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:37.827][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:37.828][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:37.829][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-09-07 16:03:37.829][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-09-07 16:03:37.835][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:37.836][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:37.837][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:37.838][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:37.839][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-09-07 16:03:37.840][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:37.841][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:37.842][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:37.843][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:37.843][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:37.844][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:37.845][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:37.845][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:37.846][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:37.847][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:37.848][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:37.848][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:37.849][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171900686].
biodb.DEBUG[2024-09-07 16:03:37.850][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:03:37.851][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:03:37.851][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:03:37.855][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:03:37.856][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:03:37.857][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:03:37.857][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:03:37.858][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:37.859][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:37.859][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:37.860][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:37.861][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:37.862][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:37.862][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:37.863][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:37.864][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-09-07 16:03:37.865][private$selectFields]
biodb.TRACE[2024-09-07 16:03:37.865][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-09-07 16:03:37.866][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-09-07 16:03:37.867][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-09-07 16:03:37.867][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:37.868][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:37.869][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:37.870][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:37.870][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:37.871][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:37.872][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:37.872][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:37.873][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-09-07 16:03:37.874][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-09-07 16:03:37.874][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:37.875][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:37.876][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:37.877][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:37.877][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-09-07 16:03:37.878][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:37.879][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:37.879][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:37.880][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:37.881][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:37.882][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:37.882][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:37.883][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:37.884][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:37.884][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:37.885][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:37.886][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:37.887][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171900685].
biodb.DEBUG[2024-09-07 16:03:37.887][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-09-07 16:03:37.888][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-09-07 16:03:37.905][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:03:37.905][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:03:37.906][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:03:37.910][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:03:37.911][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:03:37.911][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:03:37.912][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:03:37.917][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.11358306:204.33358306[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2024-09-07 16:03:37.919][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-09-07 16:03:37.920][cch$loadFileContent] Trying to load 1 files from cache: [1]: "93b38cb571769a97b3321f7f5a86241a".
biodb.TRACE[2024-09-07 16:03:37.921][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-09-07 16:03:37.922][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/93b38cb571769a97b3321f7f5a86241a.content".
biodb.DEBUG[2024-09-07 16:03:37.923][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-09-07 16:03:37.924][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:03:37.925][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:03:37.926][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:03:37.930][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:03:37.930][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:03:37.931][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:03:37.932][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:03:37.933][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:37.933][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:37.934][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:37.935][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:37.936][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:37.936][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:37.937][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:37.938][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:37.939][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-09-07 16:03:37.939][private$selectFields]
biodb.TRACE[2024-09-07 16:03:37.940][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-09-07 16:03:37.941][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-09-07 16:03:37.941][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-09-07 16:03:37.942][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:37.943][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:37.944][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:37.944][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:37.945][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:37.946][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:37.947][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:37.947][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:37.948][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-09-07 16:03:37.949][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-09-07 16:03:37.949][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:37.950][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:37.951][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:37.952][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:37.952][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-09-07 16:03:37.953][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:37.954][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:37.955][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:37.955][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:37.956][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:37.957][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:37.957][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:37.958][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:37.959][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:37.960][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:37.960][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:37.961][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:37.962][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171854777].
biodb.DEBUG[2024-09-07 16:03:37.963][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:03:37.963][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:03:37.964][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:03:37.968][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:03:37.969][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:03:37.970][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:03:37.970][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:03:37.971][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:37.972][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:37.973][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:37.973][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:37.974][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:37.975][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:37.976][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:37.976][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:37.977][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-09-07 16:03:37.978][private$selectFields]
biodb.TRACE[2024-09-07 16:03:37.978][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-09-07 16:03:37.979][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-09-07 16:03:37.980][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-09-07 16:03:37.981][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:37.981][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:37.982][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:37.983][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:37.984][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:37.984][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:37.985][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:37.986][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:37.987][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-09-07 16:03:37.987][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-09-07 16:03:37.988][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:37.989][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:37.990][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:37.990][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:37.991][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-09-07 16:03:37.992][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:37.992][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:37.993][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:37.994][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:37.995][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:37.995][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:37.996][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:37.997][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:37.998][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:37.998][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:37.999][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:38.000][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:38.001][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171853852].
biodb.DEBUG[2024-09-07 16:03:38.002][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:03:38.002][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:03:38.003][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:03:38.007][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:03:38.008][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:03:38.008][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:03:38.009][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:03:38.010][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:38.011][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:38.011][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:38.012][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:38.013][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:38.014][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:38.014][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:38.015][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:38.016][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-09-07 16:03:38.016][private$selectFields]
biodb.TRACE[2024-09-07 16:03:38.017][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-09-07 16:03:38.018][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-09-07 16:03:38.018][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-09-07 16:03:38.019][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:38.020][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:38.021][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:38.021][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:38.022][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:38.023][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:38.023][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:38.024][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:38.025][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-09-07 16:03:38.025][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-09-07 16:03:38.026][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:38.027][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:38.028][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:38.029][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:38.029][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-09-07 16:03:38.030][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:38.031][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:38.032][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:38.032][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:38.033][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:38.034][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:38.035][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:38.035][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:38.036][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:38.037][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:38.037][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:38.038][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:38.039][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171852974].
biodb.DEBUG[2024-09-07 16:03:38.040][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-09-07 16:03:38.040][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-09-07 16:03:38.042][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:03:38.042][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:03:38.043][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:03:38.047][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:03:38.048][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:03:38.049][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:03:38.049][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:03:38.054][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.04897142:226.26897142[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2024-09-07 16:03:38.057][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-09-07 16:03:38.058][cch$loadFileContent] Trying to load 1 files from cache: [1]: "405cf707472983a89dc9e0092ca888ad".
biodb.TRACE[2024-09-07 16:03:38.059][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-09-07 16:03:38.060][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/405cf707472983a89dc9e0092ca888ad.content".
biodb.DEBUG[2024-09-07 16:03:38.061][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-09-07 16:03:38.062][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:03:38.063][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:03:38.064][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:03:38.068][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:03:38.069][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:03:38.070][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:03:38.070][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:03:38.071][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:38.072][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:38.073][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:38.073][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:38.074][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:38.075][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:38.076][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:38.076][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:38.077][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-09-07 16:03:38.078][private$selectFields]
biodb.TRACE[2024-09-07 16:03:38.079][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-09-07 16:03:38.079][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-09-07 16:03:38.080][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-09-07 16:03:38.081][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:38.081][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:38.082][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:38.083][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:38.083][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:38.084][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:38.085][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:38.086][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:38.086][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-09-07 16:03:38.087][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-09-07 16:03:38.088][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:38.094][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:38.095][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:38.096][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:38.097][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-09-07 16:03:38.098][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:38.099][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:38.100][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:38.101][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:38.102][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:38.102][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:38.103][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:38.104][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:38.105][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:38.106][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:38.106][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:38.107][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:38.108][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171920497].
biodb.DEBUG[2024-09-07 16:03:38.109][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:03:38.109][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:03:38.110][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:03:38.115][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:03:38.115][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:03:38.116][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:03:38.117][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:03:38.117][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:38.118][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:38.119][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:38.120][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:38.120][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:38.121][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:38.122][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:38.123][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:38.124][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-09-07 16:03:38.124][private$selectFields]
biodb.TRACE[2024-09-07 16:03:38.125][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-09-07 16:03:38.126][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-09-07 16:03:38.127][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-09-07 16:03:38.127][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:38.128][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:38.129][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:38.130][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:38.130][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:38.131][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:38.132][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:38.132][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:38.133][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-09-07 16:03:38.134][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-09-07 16:03:38.135][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:38.135][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:38.136][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:38.137][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:38.137][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-09-07 16:03:38.138][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:38.139][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:38.140][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:38.141][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:38.141][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:38.142][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:38.143][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:38.143][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:38.144][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:38.145][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:38.146][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:38.146][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:38.147][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171920489].
biodb.DEBUG[2024-09-07 16:03:38.148][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:03:38.149][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:03:38.150][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:03:38.154][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:03:38.155][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:03:38.155][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:03:38.156][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:03:38.157][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:38.158][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:38.158][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:38.159][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:38.160][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:38.160][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:38.161][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:38.162][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:38.163][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-09-07 16:03:38.163][private$selectFields]
biodb.TRACE[2024-09-07 16:03:38.164][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-09-07 16:03:38.165][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-09-07 16:03:38.165][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-09-07 16:03:38.166][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:38.167][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:38.168][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:38.168][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:38.169][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:38.170][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:38.170][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:38.171][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:38.172][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-09-07 16:03:38.172][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-09-07 16:03:38.173][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:38.174][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:38.175][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:38.175][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:38.176][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-09-07 16:03:38.177][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:38.178][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:38.178][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:38.179][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:38.180][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:38.180][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:38.181][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:38.182][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:38.183][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:38.183][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:38.184][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:38.185][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:38.186][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171920436].
biodb.DEBUG[2024-09-07 16:03:38.186][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-09-07 16:03:38.187][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2024-09-07 16:03:38.202][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2024-09-07 16:03:38.203][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2024-09-07 16:03:38.204][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:38.205][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:38.205][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2024-09-07 16:03:38.206][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2024-09-07 16:03:38.207][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:38.207][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2024-09-07 16:03:38.211][biodb::testThat]
biodb.INFO [2024-09-07 16:03:38.212][biodb::testThat] Running test function  test_annotateMzValues_additional_fields  (" Additional fields are accepted in annotateMzValues() ").
biodb.INFO [2024-09-07 16:03:38.213][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-09-07 16:03:38.213][biodb::testThat]
biodb.TRACE[2024-09-07 16:03:38.216][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-09-07 16:03:38.216][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-09-07 16:03:38.217][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:38.218][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:38.219][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-09-07 16:03:38.219][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-09-07 16:03:38.220][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:38.221][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:38.221][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:38.222][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:38.223][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:38.224][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:38.224][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:38.225][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:38.226][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:38.226][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:38.227][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:38.228][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:38.229][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:38.230][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:38.230][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:38.231][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:38.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:38.232][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:38.233][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:38.234][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:38.235][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:38.235][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:38.236][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:38.237][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:38.237][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:38.238][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:38.239][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:38.240][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:38.240][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:38.241][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:38.242][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:38.242][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:38.243][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:38.244][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:03:38.246][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:03:38.247][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:03:38.248][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:03:38.252][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:03:38.253][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:03:38.253][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:03:38.254][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:03:38.259][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.23:204.25[MolecularWeight]&retmax=3".
biodb.DEBUG[2024-09-07 16:03:38.261][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-09-07 16:03:38.262][cch$loadFileContent] Trying to load 1 files from cache: [1]: "2616ca37a6f6e1bc281f8c51bc53ce81".
biodb.TRACE[2024-09-07 16:03:38.263][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-09-07 16:03:38.264][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/2616ca37a6f6e1bc281f8c51bc53ce81.content".
biodb.DEBUG[2024-09-07 16:03:38.265][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-09-07 16:03:38.266][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:03:38.267][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:03:38.268][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:03:38.271][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:03:38.272][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:03:38.273][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:03:38.273][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:03:38.274][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:38.275][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:38.276][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:38.276][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:38.277][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:38.278][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:38.278][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:38.279][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:38.280][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:38.281][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:38.281][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:38.282][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:38.283][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:38.284][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:38.284][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:38.285][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:38.286][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:38.286][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:38.287][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:38.288][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:38.288][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:38.289][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:38.290][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:38.291][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:38.291][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:38.292][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:38.293][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:38.294][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:38.294][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:38.295][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:38.296][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:38.297][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:38.297][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:38.298][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:38.299][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:38.300][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:38.300][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:38.301][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:38.302][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:38.302][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:38.303][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:38.304][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:38.305][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:38.305][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:38.306][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:38.307][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:38.307][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:38.308][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:38.309][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:03:38.310][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:03:38.310][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:38.311][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:38.312][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:03:38.312][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:03:38.313][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:38.314][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:38.315][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:03:38.315][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:03:38.316][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:38.317][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:38.317][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:03:38.318][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:03:38.319][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:38.320][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:38.320][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:03:38.321][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:03:38.322][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:38.322][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:38.323][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:03:38.324][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:03:38.325][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:38.325][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:38.326][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-09-07 16:03:38.327][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-09-07 16:03:38.327][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:38.328][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:38.329][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-09-07 16:03:38.329][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-09-07 16:03:38.330][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:38.331][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:38.332][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:38.332][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:38.333][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:38.334][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:38.335][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:38.336][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:38.336][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:38.337][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:38.338][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:38.339][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:38.339][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:38.340][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:38.341][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:38.342][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:38.342][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:38.343][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:38.344][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:03:38.345][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:03:38.345][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:38.351][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:38.352][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:03:38.353][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:03:38.354][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:38.355][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:38.356][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:38.357][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:38.358][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:38.359][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:38.359][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:38.360][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:38.361][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:38.362][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:38.362][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:38.363][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:38.364][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:38.365][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:38.365][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:38.366][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:38.367][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:38.368][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:38.368][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:38.369][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:38.370][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:38.371][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:38.371][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:38.372][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:38.373][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:38.374][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:38.374][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-09-07 16:03:38.375][private$selectFields]
biodb.TRACE[2024-09-07 16:03:38.376][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-09-07 16:03:38.377][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-09-07 16:03:38.377][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-09-07 16:03:38.378][ef$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:38.379][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:38.380][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:38.381][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:38.381][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:38.382][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:38.383][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:38.383][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:38.384][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:38.385][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:38.386][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:38.386][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:38.387][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:38.388][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:38.389][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:38.389][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:38.390][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:38.391][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:38.392][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:38.392][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:38.393][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:38.394][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:38.394][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:38.395][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:38.396][ef$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:03:38.397][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:03:38.397][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:38.398][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:38.399][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:03:38.399][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:03:38.400][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:38.401][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:38.402][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:03:38.402][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:03:38.403][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:38.404][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:38.404][ef$get] Asked field names are: logp.
biodb.TRACE[2024-09-07 16:03:38.405][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-09-07 16:03:38.406][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:38.407][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:38.408][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:38.408][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:38.409][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:38.410][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:38.410][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:38.411][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:38.412][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:38.413][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:38.413][ef$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:03:38.414][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:03:38.415][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:38.415][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:38.416][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:38.417][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:38.417][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:38.418][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:38.419][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:38.420][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:38.420][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:38.421][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:38.422][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:38.423][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:38.423][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:38.424][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:38.425][ef$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:38.425][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:38.426][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:38.427][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:38.428][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:38.428][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:38.429][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:38.430][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:38.430][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:38.431][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:38.432][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:38.432][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:38.433][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:38.434][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:38.435][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:38.435][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:38.436][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:38.437][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:38.438][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:38.438][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:38.439][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:38.440][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:38.440][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:38.441][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:38.442][ef$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:03:38.442][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:03:38.443][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:38.444][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:38.445][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:03:38.445][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:03:38.446][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:38.447][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:38.448][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:03:38.448][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:03:38.449][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:38.450][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:38.450][ef$get] Asked field names are: logp.
biodb.TRACE[2024-09-07 16:03:38.451][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-09-07 16:03:38.452][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:38.453][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:38.453][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:38.454][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:38.455][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:38.455][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:38.456][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:38.457][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:38.458][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:38.458][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:38.459][ef$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:03:38.460][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:03:38.461][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:38.461][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:38.462][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:38.463][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:38.464][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:38.464][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:38.465][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:38.466][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:38.466][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:38.467][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:38.468][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:38.469][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:38.469][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:38.470][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:38.471][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-09-07 16:03:38.472][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-09-07 16:03:38.472][ef$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:38.473][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:38.474][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:38.475][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:38.475][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:38.476][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:38.477][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:38.478][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:38.478][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:38.479][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:38.480][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:38.480][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:38.481][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:38.482][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:38.483][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:38.483][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:38.484][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:38.485][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:38.486][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:38.486][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:38.487][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:38.488][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:38.488][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:38.489][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:38.490][ef$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:03:38.490][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:03:38.491][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:38.492][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:38.493][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:03:38.493][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:03:38.494][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:38.495][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:38.496][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:03:38.496][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:03:38.497][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:38.498][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:38.498][ef$get] Asked field names are: logp.
biodb.TRACE[2024-09-07 16:03:38.499][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-09-07 16:03:38.500][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:38.501][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:38.501][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:38.502][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:38.503][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:38.503][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:38.504][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:38.505][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:38.506][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:38.506][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:38.507][ef$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:03:38.508][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:03:38.508][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:38.509][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:38.510][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:38.511][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:38.511][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:38.512][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:38.513][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:38.513][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:38.514][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:38.515][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:38.515][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:38.516][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:38.517][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:38.518][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:38.519][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2024-09-07 16:03:38.519][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:38.520][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:38.521][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:38.522][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:38.522][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:38.523][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:38.524][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:38.525][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:38.526][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:38.526][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:38.527][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:38.528][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:38.529][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:38.529][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:38.530][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:38.531][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:38.532][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:38.532][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:38.533][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:38.534][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:38.534][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:38.535][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:38.536][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:38.537][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:38.537][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:38.538][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:38.539][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:38.540][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:38.540][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:38.541][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:38.542][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:38.543][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:38.543][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:38.544][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:38.545][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:38.545][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:38.546][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:38.547][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:38.548][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:38.548][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:38.549][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:38.550][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:38.551][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:38.551][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:38.552][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:38.553][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:38.554][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:38.554][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:38.555][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:38.556][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:38.557][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:38.557][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:38.558][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:38.559][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:38.560][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:38.560][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:38.561][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:38.562][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:38.563][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:38.563][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:38.564][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:38.565][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:38.566][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:38.566][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:38.567][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:38.568][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:38.569][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:38.569][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:38.570][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:38.571][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:38.572][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:38.572][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:38.573][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:03:38.574][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:03:38.575][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:38.575][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:38.576][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:03:38.577][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:03:38.578][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:38.578][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:38.579][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:03:38.580][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:03:38.580][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:38.581][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:38.582][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:03:38.583][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:03:38.583][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:38.584][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:38.585][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:03:38.586][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:03:38.586][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:38.587][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:38.588][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:03:38.589][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:03:38.589][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:38.590][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:38.591][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:03:38.592][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:03:38.593][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:38.599][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:38.600][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:03:38.601][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:03:38.602][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:38.603][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:38.604][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:03:38.604][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:03:38.605][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:38.606][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:38.607][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-09-07 16:03:38.608][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-09-07 16:03:38.608][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:38.609][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:38.610][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-09-07 16:03:38.610][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-09-07 16:03:38.611][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:38.612][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:38.613][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-09-07 16:03:38.613][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-09-07 16:03:38.614][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:38.615][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:38.616][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:38.617][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:38.617][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:38.618][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:38.619][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:38.620][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:38.620][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:38.621][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:38.622][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:38.623][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:38.623][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:38.624][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:38.625][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:38.626][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:38.627][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:38.627][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:38.628][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:38.629][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:38.630][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:38.630][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:38.631][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:38.632][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:38.633][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:38.633][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:38.634][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:03:38.635][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:03:38.636][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:38.636][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:38.637][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:03:38.638][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:03:38.639][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:38.639][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:38.640][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:03:38.641][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:03:38.642][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:38.643][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:38.643][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:38.644][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:38.645][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:38.646][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:38.647][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:38.647][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:38.648][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:38.649][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:38.650][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:38.651][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:38.651][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:38.652][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:38.653][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:38.654][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:38.655][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:38.655][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:38.656][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:38.657][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:38.658][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:38.658][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:38.659][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:38.660][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:38.661][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:38.661][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:38.662][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:38.663][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:38.664][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:38.664][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:38.665][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:38.666][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:38.667][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:38.667][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:38.668][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:38.669][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:38.670][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:38.670][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:38.678][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [171920215, 5-ethynyl-2-[2-(2-pyridyl)ethynyl]pyridine, 5-ethynyl-2-[2-(2-pyridinyl)ethynyl]pyridine, 5-ethynyl-2-(2-pyridin-2-ylethynyl)pyridine, 5-ethynyl-2-(2-pyridin-2-ylethynyl)pyridine, ...].
biodb.DEBUG[2024-09-07 16:03:38.679][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:03:38.680][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:03:38.680][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:03:38.685][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:03:38.685][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:03:38.686][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:03:38.687][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:03:38.687][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:38.688][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:38.689][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:38.690][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:38.690][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:38.691][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:38.692][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:38.693][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:38.693][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:38.694][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:38.695][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:38.696][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:38.696][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:38.697][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:38.698][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:38.698][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:38.699][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:38.700][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:38.701][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:38.701][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:38.702][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:38.703][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:38.703][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:38.704][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:38.705][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:38.706][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:38.706][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:38.707][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:38.708][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:38.709][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:38.709][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:38.710][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:38.711][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:38.712][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:38.712][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:38.713][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:38.714][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:38.714][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:38.715][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:38.716][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:38.717][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:38.717][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:38.718][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:38.719][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:38.720][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:38.720][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:38.721][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:38.722][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:38.722][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:03:38.723][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:03:38.724][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:38.725][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:38.725][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:03:38.726][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:03:38.727][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:38.727][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:38.728][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:03:38.729][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:03:38.730][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:38.730][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:38.731][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:03:38.732][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:03:38.733][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:38.733][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:38.734][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:03:38.735][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:03:38.736][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:38.736][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:38.737][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:03:38.738][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:03:38.738][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:38.739][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:38.740][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-09-07 16:03:38.741][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-09-07 16:03:38.741][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:38.742][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:38.743][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-09-07 16:03:38.743][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-09-07 16:03:38.744][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:38.745][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:38.746][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:38.746][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:38.747][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:38.748][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:38.748][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:38.749][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:38.750][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:38.750][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:38.751][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:38.752][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:38.753][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:38.753][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:38.754][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:38.755][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:38.755][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:38.756][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:38.757][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:03:38.758][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:03:38.758][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:38.759][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:38.760][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:03:38.761][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:03:38.761][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:38.762][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:38.763][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:38.764][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:38.764][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:38.765][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:38.766][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:38.767][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:38.767][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:38.768][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:38.769][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:38.769][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:38.770][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:38.771][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:38.772][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:38.772][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:38.773][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:38.774][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:38.774][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:38.775][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:38.776][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:38.777][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:38.777][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:38.778][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:38.779][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:38.779][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:38.780][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-09-07 16:03:38.781][private$selectFields]
biodb.TRACE[2024-09-07 16:03:38.781][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-09-07 16:03:38.782][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-09-07 16:03:38.783][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-09-07 16:03:38.784][ef$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:38.784][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:38.785][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:38.786][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:38.786][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:38.787][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:38.788][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:38.789][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:38.789][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:38.790][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:38.791][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:38.791][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:38.792][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:38.793][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:38.794][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:38.794][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:38.795][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:38.796][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:38.796][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:38.797][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:38.798][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:38.798][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:38.799][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:38.800][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:38.801][ef$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:03:38.801][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:03:38.802][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:38.803][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:38.803][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:03:38.804][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:03:38.805][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:38.806][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:38.806][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:03:38.807][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:03:38.808][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:38.809][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:38.809][ef$get] Asked field names are: logp.
biodb.TRACE[2024-09-07 16:03:38.810][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-09-07 16:03:38.811][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:38.811][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:38.812][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:38.813][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:38.813][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:38.814][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:38.815][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:38.816][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:38.816][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:38.817][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:38.818][ef$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:03:38.818][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:03:38.819][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:38.820][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:38.820][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:38.821][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:38.822][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:38.823][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:38.824][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:38.824][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:38.825][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:38.826][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:38.826][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:38.827][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:38.828][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:38.828][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:38.829][ef$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:38.830][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:38.831][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:38.832][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:38.832][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:38.833][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:38.834][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:38.834][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:38.835][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:38.836][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:38.837][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:38.837][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:38.838][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:38.839][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:38.845][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:38.846][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:38.847][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:38.848][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:38.849][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:38.849][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:38.850][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:38.851][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:38.852][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:38.853][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:38.853][ef$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:03:38.854][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:03:38.855][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:38.856][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:38.857][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:03:38.857][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:03:38.858][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:38.859][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:38.859][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:03:38.860][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:03:38.861][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:38.862][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:38.862][ef$get] Asked field names are: logp.
biodb.TRACE[2024-09-07 16:03:38.863][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-09-07 16:03:38.864][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:38.865][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:38.865][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:38.866][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:38.867][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:38.867][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:38.868][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:38.869][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:38.870][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:38.870][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:38.871][ef$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:03:38.872][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:03:38.872][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:38.873][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:38.874][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:38.874][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:38.875][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:38.876][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:38.877][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:38.877][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:38.878][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:38.879][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:38.879][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:38.880][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:38.881][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:38.881][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:38.882][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-09-07 16:03:38.883][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-09-07 16:03:38.884][ef$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:38.884][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:38.885][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:38.886][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:38.886][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:38.887][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:38.888][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:38.889][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:38.889][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:38.890][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:38.891][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:38.891][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:38.892][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:38.893][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:38.893][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:38.894][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:38.895][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:38.896][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:38.897][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:38.898][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:38.898][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:38.899][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:38.900][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:38.901][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:38.901][ef$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:03:38.902][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:03:38.903][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:38.903][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:38.904][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:03:38.905][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:03:38.905][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:38.906][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:38.907][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:03:38.908][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:03:38.908][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:38.909][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:38.910][ef$get] Asked field names are: logp.
biodb.TRACE[2024-09-07 16:03:38.910][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-09-07 16:03:38.911][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:38.912][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:38.912][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:38.913][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:38.914][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:38.915][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:38.915][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:38.916][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:38.917][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:38.917][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:38.918][ef$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:03:38.919][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:03:38.920][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:38.920][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:38.921][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:38.922][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:38.922][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:38.923][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:38.924][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:38.924][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:38.925][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:38.926][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:38.927][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:38.927][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:38.928][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:38.929][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:38.929][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2024-09-07 16:03:38.930][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:38.931][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:38.932][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:38.932][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:38.933][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:38.934][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:38.935][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:38.935][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:38.936][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:38.937][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:38.937][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:38.938][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:38.939][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:38.940][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:38.941][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:38.942][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:38.943][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:38.943][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:38.944][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:38.945][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:38.945][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:38.946][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:38.947][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:38.948][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:38.949][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:38.949][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:38.950][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:38.951][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:38.951][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:38.952][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:38.953][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:38.954][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:38.954][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:38.955][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:38.956][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:38.956][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:38.957][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:38.958][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:38.959][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:38.959][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:38.960][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:38.961][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:38.962][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:38.962][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:38.963][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:38.964][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:38.964][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:38.965][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:38.966][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:38.967][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:38.967][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:38.968][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:38.969][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:38.969][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:38.970][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:38.971][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:38.972][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:38.972][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:38.973][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:38.974][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:38.974][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:38.975][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:38.976][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:38.977][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:38.977][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:38.978][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:38.979][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:38.979][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:38.980][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:38.981][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:38.982][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:38.982][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:38.983][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:03:38.984][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:03:38.984][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:38.985][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:38.986][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:03:38.987][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:03:38.987][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:38.988][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:38.989][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:03:38.989][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:03:38.990][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:38.991][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:38.992][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:03:38.992][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:03:38.993][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:38.994][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:38.995][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:03:38.995][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:03:38.996][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:38.997][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:38.998][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:03:38.998][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:03:38.999][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:39.000][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:39.000][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:03:39.001][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:03:39.002][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:39.003][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:39.003][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:03:39.004][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:03:39.005][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:39.005][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:39.006][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:03:39.007][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:03:39.008][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:39.008][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:39.009][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-09-07 16:03:39.010][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-09-07 16:03:39.011][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:39.011][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:39.012][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-09-07 16:03:39.013][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-09-07 16:03:39.013][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:39.014][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:39.015][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-09-07 16:03:39.016][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-09-07 16:03:39.016][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:39.017][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:39.018][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:39.019][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:39.019][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:39.020][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:39.021][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:39.021][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:39.022][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:39.023][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:39.024][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:39.024][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:39.025][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:39.026][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:39.026][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:39.027][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:39.028][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:39.029][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:39.029][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:39.030][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:39.031][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:39.031][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:39.032][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:39.033][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:39.034][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:39.034][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:39.035][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:03:39.036][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:03:39.037][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:39.037][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:39.038][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:03:39.039][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:03:39.039][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:39.040][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:39.041][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:03:39.042][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:03:39.042][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:39.043][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:39.044][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:39.045][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:39.045][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:39.046][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:39.047][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:39.048][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:39.048][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:39.049][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:39.050][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:39.051][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:39.051][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:39.052][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:39.053][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:39.054][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:39.054][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:39.055][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:39.056][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:39.056][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:39.057][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:39.058][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:39.059][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:39.059][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:39.060][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:39.061][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:39.061][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:39.062][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:39.063][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:39.064][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:39.064][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:39.065][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:39.066][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:39.067][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:39.067][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:39.068][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:39.069][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:39.069][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:39.076][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [171904710, [hydroxymethyl-[2-(2-thienyl)ethyl]phosphanyl]methanol, [hydroxymethyl(2-thiophen-2-ylethyl)phosphino]methanol, [hydroxymethyl(2-thiophen-2-ylethyl)phosphanyl]methanol, [hydroxymethyl(2-thiophen-2-ylethyl)phosphanyl]methanol, ...].
biodb.DEBUG[2024-09-07 16:03:39.076][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:03:39.077][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:03:39.078][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:03:39.087][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:03:39.088][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:03:39.089][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:03:39.090][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:03:39.091][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:39.092][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:39.093][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:39.094][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:39.094][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:39.095][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:39.096][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:39.096][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:39.097][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:39.098][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:39.099][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:39.099][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:39.100][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:39.101][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:39.101][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:39.102][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:39.103][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:39.104][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:39.104][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:39.105][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:39.106][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:39.107][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:39.107][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:39.108][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:39.109][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:39.109][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:39.110][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:39.111][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:39.112][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:39.112][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:39.113][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:39.114][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:39.115][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:39.115][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:39.116][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:39.117][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:39.117][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:39.118][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:39.119][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:39.120][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:39.120][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:39.121][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:39.122][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:39.122][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:39.123][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:39.124][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:39.125][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:39.125][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:39.126][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:03:39.127][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:03:39.127][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:39.128][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:39.129][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:03:39.130][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:03:39.130][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:39.131][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:39.132][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:03:39.133][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:03:39.133][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:39.134][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:39.135][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:03:39.135][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:03:39.136][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:39.137][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:39.137][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:03:39.138][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:03:39.139][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:39.140][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:39.140][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:03:39.141][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:03:39.142][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:39.142][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:39.143][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-09-07 16:03:39.144][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-09-07 16:03:39.144][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:39.145][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:39.146][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-09-07 16:03:39.147][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-09-07 16:03:39.147][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:39.148][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:39.149][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:39.149][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:39.150][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:39.151][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:39.151][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:39.152][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:39.153][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:39.154][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:39.154][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:39.155][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:39.156][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:39.157][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:39.157][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:39.158][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:39.159][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:39.159][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:39.160][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:03:39.161][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:03:39.161][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:39.162][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:39.163][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:03:39.164][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:03:39.165][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:39.165][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:39.166][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:39.167][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:39.168][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:39.168][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:39.169][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:39.170][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:39.171][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:39.171][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:39.172][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:39.173][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:39.173][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:39.174][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:39.175][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:39.176][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:39.176][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:39.177][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:39.178][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:39.178][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:39.179][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:39.180][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:39.181][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:39.181][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:39.182][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:39.183][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:39.183][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-09-07 16:03:39.184][private$selectFields]
biodb.TRACE[2024-09-07 16:03:39.185][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-09-07 16:03:39.185][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-09-07 16:03:39.186][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-09-07 16:03:39.187][ef$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:39.188][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:39.188][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:39.189][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:39.190][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:39.190][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:39.191][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:39.192][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:39.192][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:39.193][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:39.194][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:39.194][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:39.195][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:39.196][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:39.197][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:39.197][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:39.198][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:39.199][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:39.199][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:39.200][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:39.201][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:39.201][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:39.202][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:39.203][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:39.203][ef$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:03:39.204][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:03:39.205][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:39.205][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:39.206][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:03:39.207][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:03:39.208][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:39.208][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:39.209][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:03:39.210][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:03:39.211][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:39.211][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:39.212][ef$get] Asked field names are: logp.
biodb.TRACE[2024-09-07 16:03:39.213][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-09-07 16:03:39.214][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:39.214][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:39.215][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:39.216][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:39.216][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:39.217][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:39.218][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:39.219][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:39.219][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:39.220][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:39.221][ef$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:03:39.222][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:03:39.222][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:39.223][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:39.224][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:39.225][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:39.225][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:39.226][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:39.227][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:39.228][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:39.228][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:39.229][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:39.230][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:39.231][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:39.231][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:39.232][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:39.233][ef$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:39.234][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:39.234][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:39.235][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:39.236][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:39.237][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:39.237][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:39.238][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:39.239][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:39.240][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:39.240][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:39.241][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:39.242][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:39.243][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:39.243][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:39.244][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:39.245][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:39.245][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:39.246][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:39.247][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:39.248][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:39.248][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:39.249][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:39.250][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:39.250][ef$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:03:39.251][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:03:39.252][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:39.253][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:39.253][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:03:39.254][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:03:39.255][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:39.255][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:39.256][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:03:39.257][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:03:39.258][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:39.258][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:39.259][ef$get] Asked field names are: logp.
biodb.TRACE[2024-09-07 16:03:39.260][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-09-07 16:03:39.261][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:39.261][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:39.262][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:39.263][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:39.264][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:39.264][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:39.265][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:39.266][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:39.266][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:39.267][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:39.268][ef$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:03:39.269][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:03:39.269][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:39.270][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:39.271][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:39.271][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:39.272][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:39.273][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:39.273][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:39.274][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:39.275][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:39.276][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:39.276][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:39.277][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:39.278][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:39.278][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:39.279][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-09-07 16:03:39.280][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-09-07 16:03:39.281][ef$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:39.281][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:39.282][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:39.283][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:39.283][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:39.284][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:39.285][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:39.286][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:39.286][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:39.287][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:39.288][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:39.288][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:39.289][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:39.290][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:39.291][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:39.291][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:39.292][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:39.293][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:39.293][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:39.294][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:39.295][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:39.295][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:39.296][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:39.297][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:39.297][ef$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:03:39.298][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:03:39.299][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:39.299][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:39.300][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:03:39.301][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:03:39.302][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:39.302][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:39.303][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:03:39.304][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:03:39.304][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:39.305][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:39.306][ef$get] Asked field names are: logp.
biodb.TRACE[2024-09-07 16:03:39.306][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-09-07 16:03:39.307][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:39.308][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:39.309][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:39.309][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:39.310][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:39.311][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:39.311][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:39.312][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:39.313][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:39.313][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:39.314][ef$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:03:39.315][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:03:39.316][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:39.316][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:39.317][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:39.318][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:39.319][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:39.319][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:39.320][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:39.321][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:39.322][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:39.327][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:39.328][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:39.329][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:39.330][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:39.331][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:39.332][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2024-09-07 16:03:39.333][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:39.334][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:39.335][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:39.336][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:39.336][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:39.337][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:39.338][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:39.339][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:39.339][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:39.340][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:39.341][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:39.342][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:39.343][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:39.343][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:39.344][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:39.345][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:39.346][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:39.346][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:39.347][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:39.348][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:39.349][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:39.350][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:39.350][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:39.351][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:39.352][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:39.353][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:39.353][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:39.354][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:39.355][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:39.356][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:39.357][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:39.357][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:39.358][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:39.359][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:39.360][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:39.360][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:39.361][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:39.362][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:39.363][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:39.363][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:39.364][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:39.365][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:39.366][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:39.366][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:39.367][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:39.368][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:39.369][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:39.369][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:39.370][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:39.371][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:39.372][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:39.373][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:39.373][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:39.374][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:39.375][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:39.375][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:39.376][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:39.377][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:39.378][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:39.379][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:39.380][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:39.380][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:39.381][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:39.382][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:39.383][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:39.383][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:39.384][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:39.385][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:39.386][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:39.386][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:39.387][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:39.388][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:39.389][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:03:39.389][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:03:39.390][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:39.391][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:39.392][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:03:39.392][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:03:39.393][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:39.394][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:39.394][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:03:39.395][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:03:39.396][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:39.397][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:39.397][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:03:39.398][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:03:39.399][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:39.400][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:39.400][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:03:39.401][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:03:39.402][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:39.403][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:39.403][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:03:39.404][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:03:39.405][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:39.406][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:39.406][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:03:39.407][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:03:39.408][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:39.409][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:39.410][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:03:39.411][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:03:39.411][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:39.412][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:39.413][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:03:39.414][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:03:39.415][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:39.415][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:39.416][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-09-07 16:03:39.417][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-09-07 16:03:39.418][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:39.418][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:39.419][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-09-07 16:03:39.420][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-09-07 16:03:39.421][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:39.421][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:39.422][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-09-07 16:03:39.423][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-09-07 16:03:39.424][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:39.424][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:39.425][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:39.426][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:39.427][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:39.428][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:39.428][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:39.429][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:39.430][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:39.431][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:39.432][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:39.432][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:39.433][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:39.434][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:39.435][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:39.435][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:39.436][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:39.437][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:39.437][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:39.438][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:39.439][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:39.440][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:39.441][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:39.441][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:39.442][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:39.443][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:39.444][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:03:39.444][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:03:39.445][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:39.446][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:39.446][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:03:39.447][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:03:39.448][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:39.449][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:39.449][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:03:39.450][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:03:39.451][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:39.451][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:39.452][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:39.453][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:39.454][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:39.455][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:39.455][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:39.456][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:39.457][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:39.457][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:39.458][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:39.459][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:39.460][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:39.461][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:39.461][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:39.462][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:39.463][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:39.464][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:39.464][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:39.465][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:39.466][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:39.467][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:39.467][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:39.468][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:39.469][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:39.469][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:39.470][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:39.471][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:39.472][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:39.472][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:39.473][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:39.474][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:39.474][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:39.475][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:39.476][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:39.477][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:39.477][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:39.478][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:39.484][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [171871699, 1-(2-aminothiazol-5-yl)butane-1,2,4-triol, 1-(2-amino-5-thiazolyl)butane-1,2,4-triol, 1-(2-amino-1,3-thiazol-5-yl)butane-1,2,4-triol, 1-(2-azanyl-1,3-thiazol-5-yl)butane-1,2,4-triol, ...].
biodb.DEBUG[2024-09-07 16:03:39.485][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-09-07 16:03:39.486][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-09-07 16:03:39.488][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:03:39.489][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:03:39.489][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:03:39.494][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:03:39.494][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:03:39.495][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:03:39.496][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:03:39.500][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18:226.2[MolecularWeight]&retmax=3".
biodb.DEBUG[2024-09-07 16:03:39.503][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-09-07 16:03:39.504][cch$loadFileContent] Trying to load 1 files from cache: [1]: "69c19f6998e271aebdcd09a030d9b450".
biodb.TRACE[2024-09-07 16:03:39.505][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-09-07 16:03:39.506][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/69c19f6998e271aebdcd09a030d9b450.content".
biodb.DEBUG[2024-09-07 16:03:39.507][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-09-07 16:03:39.508][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:03:39.509][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:03:39.510][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:03:39.514][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:03:39.514][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:03:39.515][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:03:39.516][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:03:39.516][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:39.517][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:39.518][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:39.519][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:39.520][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:39.520][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:39.521][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:39.522][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:39.522][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:39.523][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:39.524][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:39.525][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:39.525][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:39.526][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:39.527][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:39.528][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:39.528][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:39.529][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:39.530][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:39.530][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:39.531][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:39.532][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:39.533][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:39.533][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:39.534][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:39.535][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:39.535][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:39.536][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:39.537][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:39.538][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:39.538][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:39.539][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:39.540][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:39.540][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:39.541][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:39.542][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:39.542][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:39.543][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:39.544][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:39.544][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:39.545][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:39.546][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:39.547][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:39.547][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:39.548][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:39.549][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:39.549][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:39.550][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:39.551][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:03:39.552][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:03:39.552][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:39.553][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:39.554][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:03:39.554][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:03:39.555][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:39.556][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:39.557][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:03:39.557][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:03:39.558][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:39.559][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:39.559][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:03:39.560][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:03:39.561][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:39.562][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:39.562][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:03:39.563][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:03:39.564][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:39.564][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:39.565][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:03:39.566][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:03:39.567][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:39.568][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:39.568][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-09-07 16:03:39.569][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-09-07 16:03:39.570][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:39.576][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:39.577][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-09-07 16:03:39.578][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-09-07 16:03:39.579][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:39.579][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:39.580][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:39.582][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:39.582][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:39.583][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:39.584][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:39.584][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:39.585][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:39.586][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:39.587][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:39.587][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:39.588][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:39.589][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:39.590][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:39.591][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:39.591][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:39.592][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:39.593][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:03:39.593][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:03:39.594][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:39.595][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:39.595][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:03:39.596][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:03:39.597][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:39.598][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:39.598][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:39.599][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:39.600][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:39.601][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:39.601][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:39.602][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:39.603][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:39.604][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:39.604][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:39.605][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:39.606][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:39.607][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:39.608][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:39.608][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:39.609][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:39.610][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:39.610][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:39.611][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:39.612][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:39.613][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:39.613][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:39.614][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:39.615][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:39.615][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:39.616][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-09-07 16:03:39.617][private$selectFields]
biodb.TRACE[2024-09-07 16:03:39.618][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-09-07 16:03:39.618][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-09-07 16:03:39.619][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-09-07 16:03:39.620][ef$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:39.621][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:39.621][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:39.622][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:39.623][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:39.624][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:39.624][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:39.625][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:39.626][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:39.626][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:39.627][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:39.628][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:39.629][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:39.630][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:39.630][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:39.631][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:39.632][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:39.632][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:39.633][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:39.634][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:39.634][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:39.635][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:39.636][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:39.636][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:39.637][ef$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:03:39.638][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:03:39.638][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:39.639][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:39.640][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:03:39.641][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:03:39.641][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:39.642][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:39.643][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:03:39.643][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:03:39.644][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:39.645][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:39.645][ef$get] Asked field names are: logp.
biodb.TRACE[2024-09-07 16:03:39.646][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-09-07 16:03:39.647][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:39.647][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:39.648][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:39.649][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:39.650][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:39.650][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:39.651][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:39.652][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:39.653][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:39.654][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:39.654][ef$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:03:39.655][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:03:39.656][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:39.657][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:39.657][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:39.658][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:39.659][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:39.659][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:39.660][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:39.661][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:39.662][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:39.662][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:39.663][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:39.664][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:39.665][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:39.665][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:39.666][ef$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:39.667][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:39.668][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:39.668][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:39.669][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:39.670][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:39.671][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:39.672][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:39.672][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:39.673][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:39.674][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:39.675][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:39.675][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:39.676][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:39.677][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:39.677][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:39.678][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:39.679][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:39.680][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:39.680][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:39.681][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:39.682][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:39.683][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:39.683][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:39.684][ef$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:03:39.685][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:03:39.685][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:39.686][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:39.687][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:03:39.687][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:03:39.688][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:39.689][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:39.689][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:03:39.691][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:03:39.691][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:39.692][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:39.693][ef$get] Asked field names are: logp.
biodb.TRACE[2024-09-07 16:03:39.694][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-09-07 16:03:39.694][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:39.695][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:39.696][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:39.697][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:39.698][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:39.699][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:39.700][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:39.700][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:39.701][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:39.702][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:39.703][ef$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:03:39.704][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:03:39.705][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:39.705][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:39.706][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:39.707][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:39.708][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:39.709][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:39.709][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:39.710][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:39.711][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:39.712][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:39.713][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:39.714][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:39.714][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:39.715][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:39.716][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-09-07 16:03:39.717][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-09-07 16:03:39.718][ef$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:39.719][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:39.719][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:39.720][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:39.721][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:39.722][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:39.723][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:39.724][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:39.724][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:39.725][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:39.726][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:39.727][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:39.728][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:39.729][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:39.730][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:39.731][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:39.731][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:39.732][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:39.733][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:39.734][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:39.735][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:39.736][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:39.736][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:39.738][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:39.739][ef$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:03:39.739][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:03:39.740][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:39.741][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:39.742][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:03:39.743][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:03:39.743][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:39.744][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:39.745][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:03:39.746][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:03:39.747][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:39.748][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:39.748][ef$get] Asked field names are: logp.
biodb.TRACE[2024-09-07 16:03:39.749][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-09-07 16:03:39.750][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:39.751][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:39.752][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:39.752][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:39.753][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:39.754][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:39.755][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:39.756][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:39.756][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:39.757][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:39.758][ef$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:03:39.759][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:03:39.760][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:39.760][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:39.761][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:39.762][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:39.763][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:39.764][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:39.764][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:39.765][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:39.766][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:39.767][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:39.768][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:39.768][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:39.769][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:39.770][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:39.771][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2024-09-07 16:03:39.772][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:39.772][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:39.773][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:39.774][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:39.775][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:39.775][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:39.776][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:39.777][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:39.778][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:39.778][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:39.779][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:39.780][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:39.781][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:39.781][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:39.782][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:39.783][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:39.783][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:39.784][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:39.785][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:39.786][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:39.786][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:39.787][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:39.788][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:39.788][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:39.789][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:39.790][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:39.791][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:39.791][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:39.792][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:39.793][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:39.794][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:39.794][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:39.795][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:39.796][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:39.797][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:39.797][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:39.798][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:39.799][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:39.800][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:39.800][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:39.801][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:39.802][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:39.803][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:39.804][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:39.804][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:39.805][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:39.806][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:39.806][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:39.807][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:39.808][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:39.809][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:39.809][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:39.810][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:39.811][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:39.811][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:39.812][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:39.813][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:39.814][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:39.814][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:39.815][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:39.816][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:39.816][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:39.817][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:39.818][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:39.819][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:39.819][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:39.820][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:39.821][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:39.821][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:39.822][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:39.823][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:39.823][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:39.824][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:03:39.847][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:03:39.849][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:39.850][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:39.851][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:03:39.852][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:03:39.853][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:39.853][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:39.854][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:03:39.855][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:03:39.856][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:39.856][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:39.857][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:03:39.858][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:03:39.858][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:39.859][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:39.860][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:03:39.861][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:03:39.861][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:39.862][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:39.863][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:03:39.863][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:03:39.864][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:39.865][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:39.866][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:03:39.866][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:03:39.867][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:39.868][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:39.868][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:03:39.869][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:03:39.870][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:39.871][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:39.871][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:03:39.872][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:03:39.873][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:39.873][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:39.874][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-09-07 16:03:39.875][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-09-07 16:03:39.876][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:39.876][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:39.877][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-09-07 16:03:39.878][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-09-07 16:03:39.879][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:39.879][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:39.880][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-09-07 16:03:39.881][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-09-07 16:03:39.881][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:39.882][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:39.883][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:39.884][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:39.884][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:39.885][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:39.886][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:39.887][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:39.887][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:39.888][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:39.889][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:39.889][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:39.890][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:39.891][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:39.892][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:39.892][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:39.893][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:39.894][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:39.894][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:39.896][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:39.896][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:39.897][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:39.898][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:39.899][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:39.899][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:39.900][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:39.901][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:03:39.902][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:03:39.902][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:39.903][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:39.904][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:03:39.905][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:03:39.905][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:39.906][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:39.907][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:03:39.908][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:03:39.908][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:39.909][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:39.910][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:39.911][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:39.911][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:39.912][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:39.913][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:39.914][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:39.914][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:39.915][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:39.916][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:39.916][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:39.917][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:39.918][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:39.918][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:39.919][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:39.920][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:39.921][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:39.921][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:39.922][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:39.923][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:39.924][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:39.924][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:39.925][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:39.926][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:39.926][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:39.927][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:39.928][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:39.929][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:39.929][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:39.930][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:39.931][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:39.932][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:39.932][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:39.933][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:39.934][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:39.934][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:39.935][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:39.941][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [171901106, 3,4-dihydroxy-4-(2-methyl-5-nitro-1H-imidazol-4-yl)butanenitrile, 3,4-dihydroxy-4-(2-methyl-5-nitro-1H-imidazol-4-yl)butanenitrile, 3,4-dihydroxy-4-(2-methyl-5-nitro-1H-imidazol-4-yl)butanenitrile, 4-(2-methyl-5-nitro-1H-imidazol-4-yl)-3,4-bis(oxidanyl)butanenitrile, ...].
biodb.DEBUG[2024-09-07 16:03:39.942][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:03:39.943][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:03:39.944][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:03:39.948][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:03:39.949][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:03:39.949][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:03:39.950][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:03:39.951][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:39.952][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:39.952][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:39.953][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:39.954][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:39.954][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:39.955][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:39.956][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:39.957][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:39.957][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:39.958][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:39.959][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:39.959][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:39.960][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:39.961][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:39.961][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:39.962][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:39.963][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:39.964][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:39.964][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:39.965][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:39.966][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:39.966][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:39.967][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:39.968][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:39.969][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:39.969][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:39.970][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:39.971][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:39.971][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:39.972][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:39.973][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:39.974][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:39.975][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:39.975][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:39.976][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:39.977][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:39.978][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:39.978][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:39.979][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:39.980][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:39.981][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:39.981][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:39.982][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:39.983][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:39.984][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:39.985][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:39.985][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:39.986][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:03:39.987][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:03:39.988][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:39.988][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:39.989][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:03:39.990][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:03:39.990][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:39.991][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:39.992][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:03:39.992][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:03:39.993][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:39.994][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:39.994][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:03:39.995][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:03:39.996][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:39.997][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:39.997][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:03:39.998][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:03:39.999][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:39.999][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:40.000][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:03:40.001][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:03:40.001][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:40.002][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:40.003][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-09-07 16:03:40.004][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-09-07 16:03:40.004][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:40.005][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:40.006][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-09-07 16:03:40.006][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-09-07 16:03:40.007][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:40.008][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:40.008][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:40.009][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:40.010][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:40.011][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:40.011][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:40.012][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:40.013][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:40.013][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:40.014][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:40.015][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:40.015][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:40.016][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:40.017][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:40.018][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:40.018][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:40.019][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:40.020][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:03:40.020][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:03:40.021][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:40.022][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:40.022][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:03:40.023][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:03:40.024][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:40.024][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:40.025][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:40.026][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:40.027][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:40.027][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:40.028][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:40.029][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:40.029][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:40.030][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:40.031][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:40.032][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:40.032][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:40.033][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:40.034][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:40.034][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:40.035][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:40.036][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:40.036][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:40.037][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:40.038][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:40.038][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:40.039][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:40.040][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:40.041][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:40.041][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:40.042][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-09-07 16:03:40.043][private$selectFields]
biodb.TRACE[2024-09-07 16:03:40.043][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-09-07 16:03:40.044][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-09-07 16:03:40.045][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-09-07 16:03:40.046][ef$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:40.046][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:40.047][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:40.048][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:40.049][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:40.049][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:40.050][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:40.051][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:40.052][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:40.052][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:40.053][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:40.054][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:40.055][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:40.056][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:40.056][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:40.057][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:40.058][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:40.059][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:40.059][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:40.060][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:40.061][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:40.062][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:40.062][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:40.063][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:40.064][ef$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:03:40.065][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:03:40.066][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:40.066][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:40.067][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:03:40.068][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:03:40.069][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:40.070][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:40.070][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:03:40.071][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:03:40.072][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:40.073][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:40.073][ef$get] Asked field names are: logp.
biodb.TRACE[2024-09-07 16:03:40.074][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-09-07 16:03:40.075][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:40.076][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:40.077][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:40.077][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:40.078][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:40.079][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:40.080][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:40.080][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:40.081][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:40.082][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:40.083][ef$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:03:40.084][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:03:40.084][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:40.085][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:40.086][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:40.087][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:40.087][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:40.093][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:40.094][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:40.095][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:40.096][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:40.097][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:40.098][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:40.099][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:40.100][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:40.100][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:40.101][ef$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:40.102][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:40.103][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:40.103][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:40.104][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:40.105][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:40.105][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:40.106][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:40.107][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:40.108][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:40.108][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:40.109][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:40.110][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:40.110][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:40.111][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:40.112][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:40.112][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:40.113][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:40.114][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:40.115][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:40.115][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:40.116][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:40.117][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:40.118][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:40.118][ef$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:03:40.119][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:03:40.120][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:40.120][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:40.121][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:03:40.122][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:03:40.123][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:40.123][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:40.124][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:03:40.125][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:03:40.126][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:40.126][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:40.127][ef$get] Asked field names are: logp.
biodb.TRACE[2024-09-07 16:03:40.128][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-09-07 16:03:40.129][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:40.129][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:40.130][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:40.131][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:40.131][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:40.132][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:40.133][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:40.134][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:40.134][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:40.135][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:40.136][ef$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:03:40.136][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:03:40.137][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:40.138][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:40.139][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:40.139][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:40.140][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:40.141][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:40.141][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:40.142][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:40.143][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:40.144][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:40.144][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:40.145][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:40.146][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:40.146][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:40.147][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-09-07 16:03:40.148][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-09-07 16:03:40.149][ef$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:40.149][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:40.150][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:40.151][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:40.151][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:40.152][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:40.153][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:40.153][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:40.154][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:40.155][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:40.156][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:40.156][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:40.157][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:40.158][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:40.158][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:40.159][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:40.160][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:40.160][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:40.161][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:40.162][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:40.163][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:40.163][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:40.164][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:40.165][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:40.165][ef$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:03:40.166][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:03:40.167][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:40.168][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:40.168][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:03:40.169][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:03:40.170][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:40.170][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:40.171][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:03:40.172][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:03:40.172][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:40.173][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:40.174][ef$get] Asked field names are: logp.
biodb.TRACE[2024-09-07 16:03:40.175][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-09-07 16:03:40.175][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:40.176][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:40.177][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:40.177][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:40.178][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:40.179][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:40.180][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:40.180][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:40.181][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:40.182][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:40.182][ef$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:03:40.183][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:03:40.184][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:40.185][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:40.185][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:40.186][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:40.187][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:40.187][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:40.188][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:40.189][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:40.190][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:40.190][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:40.191][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:40.192][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:40.192][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:40.193][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:40.194][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2024-09-07 16:03:40.195][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:40.195][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:40.196][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:40.197][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:40.197][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:40.198][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:40.199][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:40.200][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:40.200][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:40.201][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:40.202][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:40.203][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:40.203][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:40.204][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:40.205][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:40.205][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:40.206][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:40.207][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:40.208][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:40.208][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:40.209][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:40.210][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:40.211][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:40.211][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:40.212][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:40.213][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:40.214][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:40.214][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:40.215][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:40.216][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:40.217][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:40.217][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:40.218][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:40.219][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:40.220][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:40.220][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:40.221][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:40.222][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:40.223][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:40.223][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:40.224][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:40.225][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:40.226][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:40.226][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:40.227][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:40.228][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:40.229][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:40.229][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:40.230][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:40.231][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:40.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:40.233][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:40.233][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:40.234][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:40.235][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:40.235][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:40.236][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:40.237][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:40.238][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:40.238][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:40.239][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:40.240][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:40.241][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:40.241][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:40.242][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:40.243][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:40.243][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:40.244][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:40.245][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:40.246][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:40.246][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:40.247][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:40.248][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:03:40.249][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:03:40.249][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:40.250][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:40.251][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:03:40.251][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:03:40.252][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:40.253][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:40.253][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:03:40.254][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:03:40.255][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:40.256][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:40.256][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:03:40.257][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:03:40.258][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:40.259][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:40.259][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:03:40.260][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:03:40.261][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:40.261][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:40.262][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:03:40.263][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:03:40.264][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:40.265][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:40.266][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:03:40.266][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:03:40.267][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:40.268][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:40.268][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:03:40.269][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:03:40.270][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:40.271][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:40.271][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:03:40.272][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:03:40.273][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:40.273][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:40.274][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-09-07 16:03:40.275][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-09-07 16:03:40.276][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:40.277][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:40.277][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-09-07 16:03:40.278][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-09-07 16:03:40.279][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:40.279][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:40.280][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-09-07 16:03:40.281][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-09-07 16:03:40.282][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:40.282][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:40.283][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:40.284][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:40.285][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:40.285][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:40.286][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:40.287][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:40.287][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:40.288][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:40.289][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:40.290][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:40.290][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:40.291][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:40.292][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:40.293][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:40.293][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:40.294][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:40.295][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:40.295][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:40.296][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:40.297][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:40.297][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:40.298][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:40.299][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:40.300][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:40.300][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:03:40.301][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:03:40.302][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:40.302][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:40.303][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:03:40.304][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:03:40.305][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:40.305][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:40.306][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:03:40.307][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:03:40.308][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:40.308][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:40.309][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:40.310][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:40.311][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:40.312][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:40.312][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:40.313][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:40.314][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:40.315][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:40.316][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:40.316][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:40.317][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:40.318][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:40.318][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:40.319][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:40.320][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:40.321][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:40.321][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:40.322][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:40.323][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:40.323][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:40.324][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:40.325][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:40.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:40.326][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:40.327][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:40.328][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:40.329][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:40.329][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:40.330][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:40.331][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:40.331][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:40.337][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:40.338][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:40.339][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:40.340][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:40.341][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:40.347][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [171901072, 4-(5-fluoro-2-methoxy-3-pyridyl)-3,4-dihydroxy-butanenitrile, 4-(5-fluoro-2-methoxy-3-pyridinyl)-3,4-dihydroxybutanenitrile, 4-(5-fluoro-2-methoxypyridin-3-yl)-3,4-dihydroxybutanenitrile, 4-(5-fluoranyl-2-methoxy-pyridin-3-yl)-3,4-bis(oxidanyl)butanenitrile, ...].
biodb.DEBUG[2024-09-07 16:03:40.348][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:03:40.349][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:03:40.350][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:03:40.354][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:03:40.355][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:03:40.355][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:03:40.356][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:03:40.357][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:40.357][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:40.358][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:40.359][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:40.360][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:40.360][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:40.361][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:40.362][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:40.363][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:40.363][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:40.364][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:40.365][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:40.366][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:40.366][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:40.367][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:40.368][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:40.369][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:40.369][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:40.370][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:40.371][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:40.371][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:40.372][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:40.373][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:40.374][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:40.374][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:40.375][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:40.376][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:40.377][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:40.377][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:40.378][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:40.379][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:40.379][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:40.380][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:40.381][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:40.382][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:40.382][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:40.383][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:40.384][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:40.384][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:40.385][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:40.386][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:40.387][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:40.387][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:40.388][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:40.389][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:40.389][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:40.390][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:40.391][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:40.392][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:03:40.392][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:03:40.393][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:40.394][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:40.394][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:03:40.395][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:03:40.396][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:40.396][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:40.397][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:03:40.398][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:03:40.399][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:40.399][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:40.400][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:03:40.401][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:03:40.401][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:40.402][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:40.403][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:03:40.404][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:03:40.404][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:40.405][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:40.406][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:03:40.406][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:03:40.407][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:40.408][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:40.409][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-09-07 16:03:40.409][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-09-07 16:03:40.410][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:40.411][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:40.411][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-09-07 16:03:40.412][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-09-07 16:03:40.413][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:40.414][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:40.414][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:40.415][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:40.416][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:40.417][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:40.417][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:40.418][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:40.419][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:40.419][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:40.420][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:40.421][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:40.422][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:40.422][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:40.423][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:40.424][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:40.424][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:40.425][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:40.426][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:03:40.427][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:03:40.427][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:40.428][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:40.429][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:03:40.430][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:03:40.430][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:40.431][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:40.432][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:40.433][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:40.433][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:40.434][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:40.435][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:40.436][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:40.436][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:40.437][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:40.438][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:40.438][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:40.439][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:40.440][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:40.440][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:40.441][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:40.442][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:40.443][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:40.443][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:40.444][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:40.445][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:40.445][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:40.446][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:40.447][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:40.448][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:40.448][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:40.449][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-09-07 16:03:40.450][private$selectFields]
biodb.TRACE[2024-09-07 16:03:40.450][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-09-07 16:03:40.451][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-09-07 16:03:40.452][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-09-07 16:03:40.453][ef$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:40.453][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:40.454][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:40.455][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:40.455][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:40.456][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:40.457][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:40.458][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:40.458][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:40.459][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:40.460][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:40.460][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:40.461][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:40.462][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:40.462][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:40.463][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:40.464][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:40.465][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:40.465][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:40.466][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:40.467][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:40.467][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:40.468][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:40.469][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:40.469][ef$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:03:40.470][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:03:40.471][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:40.472][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:40.472][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:03:40.473][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:03:40.474][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:40.474][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:40.475][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:03:40.476][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:03:40.476][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:40.477][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:40.478][ef$get] Asked field names are: logp.
biodb.TRACE[2024-09-07 16:03:40.479][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-09-07 16:03:40.479][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:40.480][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:40.481][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:40.481][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:40.482][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:40.483][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:40.483][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:40.484][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:40.485][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:40.485][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:40.486][ef$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:03:40.487][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:03:40.488][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:40.488][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:40.489][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:40.490][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:40.490][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:40.491][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:40.492][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:40.493][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:40.493][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:40.494][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:40.495][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:40.495][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:40.496][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:40.497][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:40.497][ef$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:40.498][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:40.499][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:40.499][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:40.500][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:40.501][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:40.502][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:40.502][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:40.503][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:40.504][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:40.504][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:40.505][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:40.506][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:40.507][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:40.507][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:40.508][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:40.509][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:40.510][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:40.510][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:40.511][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:40.512][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:40.512][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:40.513][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:40.514][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:40.514][ef$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:03:40.515][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:03:40.516][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:40.517][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:40.517][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:03:40.518][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:03:40.519][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:40.519][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:40.520][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:03:40.521][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:03:40.521][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:40.522][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:40.523][ef$get] Asked field names are: logp.
biodb.TRACE[2024-09-07 16:03:40.524][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-09-07 16:03:40.524][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:40.525][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:40.526][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:40.526][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:40.527][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:40.528][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:40.528][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:40.529][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:40.530][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:40.531][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:40.531][ef$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:03:40.532][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:03:40.533][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:40.533][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:40.534][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:40.535][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:40.535][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:40.536][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:40.537][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:40.538][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:40.538][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:40.539][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:40.540][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:40.540][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:40.541][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:40.542][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:40.543][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-09-07 16:03:40.543][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-09-07 16:03:40.544][ef$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:40.545][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:40.545][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:40.546][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:40.547][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:40.547][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:40.548][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:40.549][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:40.549][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:40.550][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:40.551][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:40.552][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:40.552][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:40.553][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:40.554][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:40.554][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:40.555][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:40.556][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:40.557][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:40.557][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:40.558][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:40.559][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:40.559][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:40.560][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:40.561][ef$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:03:40.561][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:03:40.562][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:40.563][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:40.564][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:03:40.564][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:03:40.565][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:40.566][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:40.566][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:03:40.567][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:03:40.568][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:40.568][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:40.569][ef$get] Asked field names are: logp.
biodb.TRACE[2024-09-07 16:03:40.570][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-09-07 16:03:40.571][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:40.571][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:40.577][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:40.578][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:40.579][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:40.580][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:40.581][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:40.582][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:40.583][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:40.583][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:40.584][ef$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:03:40.585][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:03:40.585][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:40.586][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:40.587][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:40.587][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:40.588][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:40.589][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:40.590][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:40.590][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:40.591][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:40.592][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:40.592][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:40.593][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:40.594][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:40.595][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:40.595][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2024-09-07 16:03:40.596][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:40.597][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:40.598][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:40.598][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:40.599][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:40.600][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:40.601][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:40.601][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:40.602][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:40.603][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:40.604][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:40.604][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:40.605][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:40.606][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:40.607][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:40.607][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:40.608][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:40.609][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:40.610][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:40.610][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:40.611][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:40.612][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:40.612][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:40.613][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:40.614][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:40.615][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:40.615][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:40.616][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:40.617][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:40.618][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:40.618][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:40.619][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:40.620][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:40.621][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:40.621][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:40.622][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:40.623][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:40.624][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:40.624][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:40.625][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:40.626][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:40.626][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:40.627][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:40.628][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:40.629][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:40.629][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:40.630][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:40.631][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:40.632][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:40.632][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:40.633][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:40.634][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:40.634][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:40.635][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:40.636][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:40.636][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:40.637][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:40.638][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:40.639][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:40.639][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:40.640][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:40.641][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:40.642][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:40.642][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:40.643][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:40.644][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:40.644][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:40.645][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:40.646][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:40.647][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:40.647][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:40.648][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:40.649][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:03:40.650][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:03:40.650][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:40.651][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:40.652][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:03:40.653][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:03:40.653][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:40.654][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:40.655][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:03:40.655][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:03:40.656][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:40.657][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:40.658][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:03:40.658][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:03:40.659][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:40.660][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:40.661][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:03:40.661][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:03:40.662][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:40.663][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:40.663][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:03:40.664][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:03:40.665][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:40.666][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:40.666][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:03:40.667][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:03:40.668][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:40.668][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:40.669][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:03:40.670][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:03:40.671][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:40.671][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:40.672][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:03:40.673][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:03:40.674][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:40.674][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:40.675][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-09-07 16:03:40.676][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-09-07 16:03:40.677][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:40.677][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:40.678][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-09-07 16:03:40.679][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-09-07 16:03:40.679][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:40.680][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:40.681][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-09-07 16:03:40.682][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-09-07 16:03:40.682][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:40.683][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:40.684][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:40.685][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:40.685][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:40.686][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:40.687][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:40.687][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:40.688][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:40.689][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:40.690][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:40.690][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:40.691][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:40.692][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:40.693][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:40.693][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:40.694][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:40.695][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:40.696][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:40.696][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:40.697][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:40.698][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:40.698][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:40.699][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:40.700][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:40.700][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:40.701][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:03:40.702][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:03:40.703][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:40.703][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:40.704][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:03:40.705][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:03:40.706][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:40.706][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:40.707][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:03:40.708][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:03:40.708][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:40.709][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:40.710][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:40.711][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:40.711][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:40.712][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:40.713][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:40.714][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:40.714][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:40.715][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:40.716][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:40.716][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:40.717][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:40.718][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:40.719][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:40.719][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:40.720][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:40.721][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:40.721][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:40.722][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:40.723][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:40.724][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:40.724][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:40.725][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:40.726][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:40.726][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:40.727][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:40.728][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:40.729][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:40.729][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:40.730][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:40.731][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:40.732][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:40.732][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:40.733][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:40.734][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:40.734][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:40.735][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:40.741][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [171877309, 4-(3-amino-4-cyano-1H-pyrazol-5-yl)-3,4-dihydroxy-butanoic acid, 4-(3-amino-4-cyano-1H-pyrazol-5-yl)-3,4-dihydroxybutanoic acid, 4-(3-amino-4-cyano-1H-pyrazol-5-yl)-3,4-dihydroxybutanoic acid, 4-(3-azanyl-4-cyano-1H-pyrazol-5-yl)-3,4-bis(oxidanyl)butanoic acid, ...].
biodb.DEBUG[2024-09-07 16:03:40.742][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-09-07 16:03:40.743][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-09-07 16:03:40.749][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:03:40.750][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:03:40.750][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:03:40.754][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:03:40.755][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:03:40.756][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:03:40.756][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:03:40.761][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.23:204.25[MolecularWeight]&retmax=3".
biodb.DEBUG[2024-09-07 16:03:40.764][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-09-07 16:03:40.765][cch$loadFileContent] Trying to load 1 files from cache: [1]: "2616ca37a6f6e1bc281f8c51bc53ce81".
biodb.TRACE[2024-09-07 16:03:40.765][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-09-07 16:03:40.766][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/2616ca37a6f6e1bc281f8c51bc53ce81.content".
biodb.DEBUG[2024-09-07 16:03:40.768][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-09-07 16:03:40.769][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:03:40.770][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:03:40.770][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:03:40.774][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:03:40.775][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:03:40.776][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:03:40.776][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:03:40.777][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:40.778][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:40.778][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:40.779][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:40.780][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:40.781][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:40.781][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:40.782][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:40.783][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:40.783][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:40.784][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:40.785][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:40.786][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:40.786][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:40.787][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:40.788][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:40.788][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:40.789][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:40.790][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:40.790][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:40.791][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:40.792][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:40.793][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:40.793][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:40.794][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:40.795][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:40.795][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:40.796][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:40.797][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:40.798][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:40.798][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:40.799][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:40.800][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:40.800][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:40.801][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:40.802][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:40.802][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:40.803][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:40.804][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:40.805][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:40.805][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:40.806][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:40.807][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:40.807][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:40.808][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:40.809][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:40.809][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:40.810][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:40.811][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:03:40.812][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:03:40.812][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:40.813][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:40.819][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:03:40.820][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:03:40.821][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:40.822][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:40.823][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:03:40.824][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:03:40.824][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:40.825][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:40.826][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:03:40.827][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:03:40.827][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:40.828][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:40.829][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:03:40.830][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:03:40.830][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:40.831][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:40.832][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:03:40.833][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:03:40.833][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:40.834][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:40.835][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-09-07 16:03:40.836][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-09-07 16:03:40.836][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:40.837][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:40.838][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-09-07 16:03:40.839][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-09-07 16:03:40.839][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:40.840][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:40.841][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:40.842][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:40.842][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:40.843][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:40.844][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:40.845][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:40.845][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:40.846][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:40.847][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:40.847][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:40.848][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:40.849][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:40.850][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:40.850][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:40.851][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:40.852][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:40.852][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:03:40.853][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:03:40.854][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:40.855][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:40.855][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:03:40.856][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:03:40.857][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:40.857][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:40.858][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:40.859][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:40.860][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:40.860][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:40.861][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:40.862][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:40.862][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:40.863][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:40.864][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:40.865][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:40.865][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:40.866][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:40.867][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:40.867][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:40.868][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:40.869][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:40.869][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:40.870][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:40.871][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:40.872][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:40.872][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:40.873][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:40.874][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:40.874][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:40.875][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-09-07 16:03:40.876][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-09-07 16:03:40.877][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:40.877][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:40.878][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-09-07 16:03:40.879][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-09-07 16:03:40.879][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:40.880][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:40.881][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-09-07 16:03:40.881][private$selectFields]
biodb.TRACE[2024-09-07 16:03:40.882][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-09-07 16:03:40.883][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-09-07 16:03:40.884][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-09-07 16:03:40.884][ef$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:40.885][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:40.886][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:40.886][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:40.887][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:40.888][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:40.888][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:40.889][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:40.890][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:40.891][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:40.891][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:40.892][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:40.893][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:40.894][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:40.894][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:40.895][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:40.896][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:40.897][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:40.897][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:40.898][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:40.899][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:40.900][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:40.900][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:40.901][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:40.902][ef$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:03:40.902][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:03:40.903][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:40.904][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:40.904][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:03:40.905][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:03:40.906][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:40.907][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:40.907][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:03:40.908][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:03:40.909][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:40.909][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:40.910][ef$get] Asked field names are: logp.
biodb.TRACE[2024-09-07 16:03:40.911][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-09-07 16:03:40.912][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:40.912][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:40.913][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:40.914][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:40.914][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:40.915][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:40.916][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:40.916][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:40.917][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:40.918][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:40.919][ef$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:03:40.919][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:03:40.920][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:40.921][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:40.921][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:40.922][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:40.923][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:40.923][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:40.924][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:40.925][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:40.926][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:40.926][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:40.927][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:40.928][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:40.928][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:40.929][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:40.930][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-09-07 16:03:40.930][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-09-07 16:03:40.931][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:40.932][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:40.933][ef$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:40.933][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:40.934][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:40.935][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:40.935][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:40.936][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:40.937][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:40.937][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:40.938][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:40.939][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:40.940][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:40.940][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:40.941][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:40.942][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:40.942][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:40.943][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:40.944][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:40.944][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:40.945][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:40.946][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:40.946][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:40.947][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:40.948][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:40.949][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:40.949][ef$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:03:40.950][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:03:40.951][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:40.951][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:40.952][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:03:40.953][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:03:40.954][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:40.954][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:40.955][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:03:40.956][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:03:40.956][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:40.957][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:40.958][ef$get] Asked field names are: logp.
biodb.TRACE[2024-09-07 16:03:40.958][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-09-07 16:03:40.959][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:40.960][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:40.961][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:40.961][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:40.962][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:40.963][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:40.963][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:40.964][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:40.965][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:40.966][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:40.966][ef$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:03:40.967][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:03:40.968][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:40.968][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:40.969][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:40.970][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:40.971][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:40.971][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:40.972][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:40.973][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:40.973][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:40.974][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:40.975][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:40.975][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:40.976][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:40.977][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:40.978][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-09-07 16:03:40.978][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-09-07 16:03:40.979][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:40.980][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:40.980][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-09-07 16:03:40.981][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-09-07 16:03:40.982][ef$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:40.983][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:40.983][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:40.984][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:40.985][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:40.985][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:40.986][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:40.987][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:40.988][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:40.988][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:40.989][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:40.990][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:40.990][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:40.991][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:40.992][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:40.993][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:40.993][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:40.994][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:40.995][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:40.995][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:40.996][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:40.997][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:40.997][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:40.998][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:40.999][ef$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:03:41.000][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:03:41.000][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:41.001][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:41.002][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:03:41.002][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:03:41.003][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:41.004][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:41.005][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:03:41.005][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:03:41.006][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:41.007][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:41.007][ef$get] Asked field names are: logp.
biodb.TRACE[2024-09-07 16:03:41.008][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-09-07 16:03:41.009][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:41.009][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:41.010][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:41.011][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:41.012][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:41.012][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:41.013][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:41.014][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:41.014][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:41.015][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:41.016][ef$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:03:41.017][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:03:41.017][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:41.018][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:41.019][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:41.020][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:41.020][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:41.021][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:41.022][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:41.023][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:41.024][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:41.025][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:41.025][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:41.026][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:41.027][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:41.028][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:41.029][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2024-09-07 16:03:41.030][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:41.031][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:41.031][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:41.032][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:41.033][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:41.034][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:41.035][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:41.035][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:41.036][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:41.037][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:41.038][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:41.039][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:41.040][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:41.040][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:41.041][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:41.042][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:41.043][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:41.043][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:41.044][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:41.045][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:41.046][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:41.046][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:41.047][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:41.048][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:41.049][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:41.049][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:41.050][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:41.051][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:41.052][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:41.052][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:41.053][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:41.054][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:41.055][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:41.055][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:41.056][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:41.057][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:41.063][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:41.064][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:41.065][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:41.065][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:41.066][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:41.067][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:41.068][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:41.069][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:41.070][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:41.070][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:41.071][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:41.072][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:41.073][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:41.073][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:41.074][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:41.075][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:41.075][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:41.076][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:41.077][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:41.078][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:41.078][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:41.079][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:41.080][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:41.080][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:41.081][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:41.082][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:41.083][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:41.083][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:41.084][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:41.085][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:41.086][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:41.086][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:41.087][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:41.088][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:41.089][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:41.089][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:41.090][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:03:41.091][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:03:41.092][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:41.092][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:41.093][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:03:41.094][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:03:41.095][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:41.095][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:41.096][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:03:41.097][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:03:41.098][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:41.098][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:41.099][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:03:41.100][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:03:41.101][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:41.101][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:41.102][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:03:41.103][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:03:41.103][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:41.104][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:41.105][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:03:41.106][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:03:41.107][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:41.107][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:41.108][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:03:41.109][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:03:41.110][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:41.111][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:41.112][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:03:41.113][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:03:41.113][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:41.114][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:41.115][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:03:41.116][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:03:41.116][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:41.117][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:41.118][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-09-07 16:03:41.119][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-09-07 16:03:41.119][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:41.120][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:41.121][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-09-07 16:03:41.121][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-09-07 16:03:41.122][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:41.123][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:41.124][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-09-07 16:03:41.124][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-09-07 16:03:41.125][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:41.126][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:41.127][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:41.127][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:41.128][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:41.129][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:41.130][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:41.130][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:41.131][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:41.132][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:41.132][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:41.133][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:41.134][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:41.135][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:41.135][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:41.136][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:41.137][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:41.138][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:41.138][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:41.139][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:41.140][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:41.141][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:41.142][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:41.142][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:41.143][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:41.144][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:41.145][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:03:41.145][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:03:41.146][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:41.147][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:41.147][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:03:41.148][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:03:41.149][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:41.150][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:41.150][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:03:41.151][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:03:41.152][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:41.153][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:41.153][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:41.154][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:41.155][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:41.156][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:41.156][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:41.157][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:41.158][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:41.159][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:41.159][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:41.160][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:41.161][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:41.161][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:41.162][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:41.163][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:41.164][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:41.165][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:41.165][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:41.166][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:41.167][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:41.167][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:41.168][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:41.169][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:41.170][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:41.170][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:41.171][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:41.172][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:41.173][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:41.173][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:41.174][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:41.175][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:41.176][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:41.176][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:41.177][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:41.178][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:41.178][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:41.179][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:41.185][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [171920215, 5-ethynyl-2-[2-(2-pyridyl)ethynyl]pyridine, 5-ethynyl-2-[2-(2-pyridinyl)ethynyl]pyridine, 5-ethynyl-2-(2-pyridin-2-ylethynyl)pyridine, 5-ethynyl-2-(2-pyridin-2-ylethynyl)pyridine, ...].
biodb.DEBUG[2024-09-07 16:03:41.186][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:03:41.187][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:03:41.187][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:03:41.192][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:03:41.192][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:03:41.193][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:03:41.194][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:03:41.194][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:41.195][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:41.196][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:41.196][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:41.197][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:41.198][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:41.199][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:41.199][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:41.200][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:41.201][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:41.202][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:41.202][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:41.203][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:41.204][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:41.204][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:41.205][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:41.206][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:41.207][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:41.207][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:41.208][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:41.209][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:41.209][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:41.210][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:41.211][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:41.211][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:41.212][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:41.213][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:41.214][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:41.214][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:41.215][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:41.216][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:41.216][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:41.217][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:41.218][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:41.218][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:41.219][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:41.220][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:41.221][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:41.222][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:41.222][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:41.223][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:41.224][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:41.224][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:41.225][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:41.226][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:41.227][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:41.227][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:41.228][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:41.229][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:03:41.230][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:03:41.230][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:41.231][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:41.232][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:03:41.232][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:03:41.233][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:41.234][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:41.235][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:03:41.235][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:03:41.236][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:41.237][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:41.238][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:03:41.238][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:03:41.239][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:41.240][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:41.240][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:03:41.241][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:03:41.242][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:41.243][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:41.243][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:03:41.244][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:03:41.245][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:41.245][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:41.246][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-09-07 16:03:41.247][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-09-07 16:03:41.248][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:41.248][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:41.249][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-09-07 16:03:41.250][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-09-07 16:03:41.250][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:41.251][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:41.252][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:41.253][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:41.253][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:41.254][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:41.255][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:41.255][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:41.256][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:41.257][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:41.257][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:41.258][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:41.259][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:41.260][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:41.260][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:41.261][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:41.262][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:41.262][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:41.263][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:03:41.264][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:03:41.265][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:41.265][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:41.266][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:03:41.267][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:03:41.267][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:41.268][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:41.269][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:41.270][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:41.270][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:41.271][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:41.272][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:41.272][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:41.273][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:41.274][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:41.275][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:41.275][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:41.276][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:41.277][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:41.278][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:41.278][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:41.279][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:41.280][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:41.280][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:41.281][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:41.282][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:41.283][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:41.283][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:41.284][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:41.285][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:41.285][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:41.286][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-09-07 16:03:41.287][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-09-07 16:03:41.288][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:41.288][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:41.289][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-09-07 16:03:41.290][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-09-07 16:03:41.290][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:41.291][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:41.292][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-09-07 16:03:41.293][private$selectFields]
biodb.TRACE[2024-09-07 16:03:41.293][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-09-07 16:03:41.294][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-09-07 16:03:41.295][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-09-07 16:03:41.295][ef$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:41.296][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:41.297][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:41.297][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:41.298][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:41.299][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:41.299][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:41.300][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:41.306][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:41.307][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:41.308][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:41.309][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:41.310][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:41.311][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:41.311][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:41.312][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:41.313][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:41.314][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:41.314][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:41.315][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:41.316][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:41.316][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:41.317][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:41.318][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:41.318][ef$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:03:41.319][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:03:41.320][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:41.321][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:41.321][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:03:41.322][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:03:41.323][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:41.324][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:41.324][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:03:41.325][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:03:41.326][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:41.326][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:41.327][ef$get] Asked field names are: logp.
biodb.TRACE[2024-09-07 16:03:41.328][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-09-07 16:03:41.329][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:41.329][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:41.330][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:41.331][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:41.331][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:41.332][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:41.333][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:41.334][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:41.334][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:41.335][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:41.336][ef$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:03:41.336][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:03:41.337][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:41.338][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:41.338][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:41.339][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:41.340][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:41.341][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:41.341][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:41.342][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:41.343][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:41.343][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:41.344][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:41.345][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:41.346][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:41.346][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:41.347][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-09-07 16:03:41.348][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-09-07 16:03:41.348][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:41.349][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:41.350][ef$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:41.351][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:41.352][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:41.352][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:41.353][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:41.354][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:41.354][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:41.355][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:41.356][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:41.356][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:41.357][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:41.358][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:41.359][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:41.359][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:41.360][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:41.361][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:41.361][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:41.362][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:41.363][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:41.363][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:41.364][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:41.365][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:41.366][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:41.366][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:41.367][ef$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:03:41.368][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:03:41.368][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:41.369][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:41.370][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:03:41.370][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:03:41.371][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:41.372][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:41.372][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:03:41.373][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:03:41.374][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:41.375][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:41.375][ef$get] Asked field names are: logp.
biodb.TRACE[2024-09-07 16:03:41.376][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-09-07 16:03:41.377][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:41.377][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:41.378][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:41.379][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:41.380][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:41.380][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:41.381][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:41.382][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:41.382][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:41.383][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:41.384][ef$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:03:41.384][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:03:41.385][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:41.386][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:41.387][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:41.387][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:41.388][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:41.389][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:41.390][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:41.390][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:41.391][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:41.392][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:41.392][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:41.393][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:41.394][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:41.394][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:41.395][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-09-07 16:03:41.396][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-09-07 16:03:41.397][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:41.397][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:41.398][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-09-07 16:03:41.399][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-09-07 16:03:41.400][ef$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:41.400][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:41.401][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:41.402][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:41.402][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:41.403][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:41.404][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:41.404][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:41.405][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:41.406][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:41.407][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:41.407][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:41.408][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:41.409][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:41.409][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:41.410][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:41.411][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:41.412][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:41.412][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:41.413][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:41.414][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:41.415][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:41.415][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:41.416][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:41.417][ef$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:03:41.417][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:03:41.418][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:41.419][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:41.420][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:03:41.420][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:03:41.421][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:41.422][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:41.423][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:03:41.423][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:03:41.424][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:41.425][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:41.426][ef$get] Asked field names are: logp.
biodb.TRACE[2024-09-07 16:03:41.426][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-09-07 16:03:41.427][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:41.428][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:41.428][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:41.429][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:41.430][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:41.430][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:41.431][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:41.432][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:41.433][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:41.433][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:41.434][ef$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:03:41.435][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:03:41.435][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:41.436][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:41.437][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:41.437][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:41.438][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:41.439][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:41.439][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:41.440][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:41.441][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:41.441][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:41.442][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:41.443][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:41.444][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:41.444][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:41.445][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2024-09-07 16:03:41.446][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:41.447][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:41.448][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:41.448][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:41.449][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:41.450][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:41.450][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:41.451][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:41.452][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:41.453][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:41.453][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:41.454][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:41.455][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:41.455][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:41.456][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:41.457][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:41.457][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:41.458][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:41.459][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:41.460][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:41.460][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:41.461][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:41.462][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:41.462][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:41.463][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:41.464][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:41.465][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:41.465][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:41.466][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:41.467][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:41.467][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:41.468][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:41.469][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:41.470][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:41.470][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:41.471][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:41.472][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:41.473][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:41.473][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:41.474][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:41.475][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:41.475][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:41.476][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:41.477][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:41.477][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:41.478][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:41.479][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:41.480][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:41.480][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:41.481][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:41.482][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:41.482][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:41.483][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:41.484][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:41.485][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:41.485][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:41.486][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:41.487][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:41.487][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:41.488][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:41.489][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:41.490][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:41.490][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:41.491][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:41.492][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:41.493][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:41.493][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:41.494][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:41.495][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:41.496][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:41.496][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:41.497][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:41.498][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:03:41.499][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:03:41.499][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:41.500][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:41.501][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:03:41.501][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:03:41.502][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:41.503][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:41.503][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:03:41.504][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:03:41.505][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:41.506][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:41.506][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:03:41.507][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:03:41.508][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:41.509][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:41.509][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:03:41.510][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:03:41.511][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:41.512][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:41.512][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:03:41.513][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:03:41.514][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:41.515][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:41.515][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:03:41.516][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:03:41.517][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:41.518][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:41.518][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:03:41.519][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:03:41.520][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:41.520][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:41.521][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:03:41.522][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:03:41.523][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:41.523][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:41.524][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-09-07 16:03:41.525][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-09-07 16:03:41.525][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:41.526][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:41.527][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-09-07 16:03:41.528][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-09-07 16:03:41.528][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:41.529][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:41.530][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-09-07 16:03:41.530][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-09-07 16:03:41.531][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:41.532][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:41.533][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:41.533][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:41.534][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:41.535][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:41.535][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:41.536][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:41.537][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:41.538][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:41.538][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:41.539][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:41.540][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:41.541][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:41.547][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:41.548][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:41.549][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:41.550][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:41.551][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:41.551][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:41.552][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:41.553][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:41.554][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:41.554][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:41.555][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:41.556][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:41.556][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:03:41.557][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:03:41.558][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:41.559][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:41.559][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:03:41.560][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:03:41.561][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:41.561][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:41.562][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:03:41.563][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:03:41.564][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:41.564][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:41.565][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:41.566][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:41.567][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:41.567][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:41.568][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:41.569][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:41.570][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:41.570][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:41.571][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:41.572][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:41.572][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:41.573][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:41.574][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:41.575][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:41.576][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:41.576][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:41.577][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:41.578][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:41.578][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:41.579][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:41.580][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:41.581][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:41.581][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:41.582][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:41.583][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:41.584][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:41.584][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:41.585][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:41.586][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:41.586][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:41.587][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:41.588][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:41.589][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:41.589][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:41.590][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:41.591][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:41.597][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [171904710, [hydroxymethyl-[2-(2-thienyl)ethyl]phosphanyl]methanol, [hydroxymethyl(2-thiophen-2-ylethyl)phosphino]methanol, [hydroxymethyl(2-thiophen-2-ylethyl)phosphanyl]methanol, [hydroxymethyl(2-thiophen-2-ylethyl)phosphanyl]methanol, ...].
biodb.DEBUG[2024-09-07 16:03:41.598][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:03:41.599][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:03:41.599][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:03:41.604][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:03:41.604][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:03:41.605][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:03:41.606][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:03:41.606][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:41.607][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:41.608][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:41.609][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:41.609][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:41.610][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:41.611][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:41.612][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:41.612][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:41.613][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:41.614][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:41.615][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:41.615][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:41.616][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:41.617][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:41.618][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:41.618][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:41.619][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:41.620][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:41.620][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:41.621][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:41.622][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:41.623][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:41.623][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:41.624][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:41.625][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:41.625][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:41.626][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:41.627][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:41.628][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:41.628][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:41.629][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:41.630][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:41.630][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:41.631][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:41.632][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:41.632][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:41.633][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:41.634][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:41.635][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:41.635][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:41.636][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:41.637][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:41.638][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:41.638][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:41.639][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:41.640][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:41.640][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:41.641][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:03:41.642][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:03:41.642][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:41.643][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:41.644][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:03:41.645][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:03:41.645][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:41.646][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:41.647][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:03:41.648][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:03:41.648][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:41.649][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:41.650][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:03:41.651][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:03:41.651][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:41.652][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:41.653][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:03:41.654][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:03:41.655][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:41.655][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:41.656][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:03:41.657][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:03:41.658][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:41.658][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:41.659][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-09-07 16:03:41.660][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-09-07 16:03:41.661][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:41.661][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:41.662][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-09-07 16:03:41.663][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-09-07 16:03:41.664][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:41.665][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:41.665][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:41.666][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:41.667][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:41.667][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:41.668][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:41.669][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:41.670][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:41.670][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:41.671][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:41.672][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:41.672][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:41.673][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:41.674][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:41.675][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:41.675][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:41.676][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:41.677][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:03:41.677][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:03:41.678][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:41.679][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:41.679][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:03:41.680][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:03:41.681][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:41.682][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:41.682][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:41.683][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:41.684][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:41.684][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:41.685][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:41.686][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:41.687][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:41.687][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:41.688][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:41.689][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:41.689][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:41.690][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:41.691][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:41.692][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:41.692][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:41.693][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:41.694][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:41.694][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:41.695][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:41.696][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:41.696][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:41.697][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:41.698][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:41.698][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:41.699][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-09-07 16:03:41.700][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-09-07 16:03:41.701][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:41.701][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:41.702][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-09-07 16:03:41.703][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-09-07 16:03:41.703][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:41.704][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:41.705][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-09-07 16:03:41.706][private$selectFields]
biodb.TRACE[2024-09-07 16:03:41.706][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-09-07 16:03:41.707][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-09-07 16:03:41.708][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-09-07 16:03:41.708][ef$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:41.709][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:41.710][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:41.710][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:41.711][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:41.712][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:41.713][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:41.714][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:41.714][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:41.715][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:41.716][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:41.716][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:41.717][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:41.718][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:41.719][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:41.719][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:41.720][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:41.721][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:41.722][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:41.722][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:41.723][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:41.724][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:41.725][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:41.725][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:41.726][ef$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:03:41.727][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:03:41.727][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:41.728][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:41.729][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:03:41.729][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:03:41.730][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:41.731][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:41.732][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:03:41.732][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:03:41.733][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:41.734][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:41.734][ef$get] Asked field names are: logp.
biodb.TRACE[2024-09-07 16:03:41.735][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-09-07 16:03:41.736][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:41.736][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:41.737][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:41.738][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:41.739][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:41.739][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:41.740][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:41.741][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:41.741][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:41.742][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:41.743][ef$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:03:41.744][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:03:41.744][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:41.745][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:41.746][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:41.746][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:41.747][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:41.748][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:41.748][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:41.749][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:41.750][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:41.750][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:41.751][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:41.752][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:41.753][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:41.754][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:41.754][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-09-07 16:03:41.755][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-09-07 16:03:41.756][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:41.756][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:41.757][ef$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:41.758][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:41.758][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:41.759][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:41.760][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:41.761][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:41.761][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:41.762][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:41.763][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:41.763][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:41.764][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:41.765][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:41.766][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:41.766][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:41.767][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:41.768][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:41.769][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:41.769][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:41.770][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:41.771][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:41.771][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:41.772][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:41.773][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:41.773][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:41.774][ef$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:03:41.775][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:03:41.776][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:41.776][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:41.777][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:03:41.778][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:03:41.779][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:41.779][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:41.780][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:03:41.781][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:03:41.781][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:41.782][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:41.783][ef$get] Asked field names are: logp.
biodb.TRACE[2024-09-07 16:03:41.789][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-09-07 16:03:41.790][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:41.791][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:41.791][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:41.792][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:41.793][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:41.794][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:41.795][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:41.795][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:41.796][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:41.797][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:41.797][ef$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:03:41.798][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:03:41.799][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:41.800][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:41.800][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:41.801][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:41.802][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:41.802][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:41.803][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:41.804][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:41.805][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:41.805][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:41.806][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:41.807][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:41.807][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:41.808][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:41.809][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-09-07 16:03:41.810][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-09-07 16:03:41.810][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:41.811][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:41.812][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-09-07 16:03:41.812][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-09-07 16:03:41.813][ef$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:41.814][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:41.815][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:41.815][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:41.816][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:41.817][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:41.817][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:41.818][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:41.819][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:41.820][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:41.820][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:41.821][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:41.822][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:41.823][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:41.823][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:41.824][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:41.825][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:41.826][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:41.826][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:41.827][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:41.828][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:41.828][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:41.829][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:41.830][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:41.831][ef$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:03:41.832][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:03:41.832][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:41.833][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:41.834][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:03:41.834][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:03:41.835][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:41.836][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:41.836][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:03:41.837][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:03:41.838][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:41.839][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:41.839][ef$get] Asked field names are: logp.
biodb.TRACE[2024-09-07 16:03:41.840][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-09-07 16:03:41.841][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:41.841][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:41.842][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:41.843][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:41.844][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:41.844][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:41.845][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:41.846][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:41.846][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:41.847][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:41.848][ef$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:03:41.848][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:03:41.849][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:41.850][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:41.850][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:41.851][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:41.852][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:41.853][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:41.853][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:41.854][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:41.855][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:41.856][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:41.856][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:41.857][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:41.858][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:41.858][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:41.859][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2024-09-07 16:03:41.860][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:41.861][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:41.861][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:41.862][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:41.863][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:41.864][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:41.864][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:41.865][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:41.866][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:41.866][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:41.867][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:41.868][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:41.869][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:41.869][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:41.870][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:41.871][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:41.872][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:41.872][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:41.873][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:41.874][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:41.874][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:41.875][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:41.876][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:41.877][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:41.877][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:41.878][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:41.879][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:41.880][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:41.880][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:41.881][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:41.882][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:41.882][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:41.883][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:41.884][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:41.885][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:41.886][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:41.886][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:41.887][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:41.888][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:41.889][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:41.889][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:41.890][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:41.891][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:41.892][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:41.892][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:41.893][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:41.894][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:41.894][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:41.895][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:41.896][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:41.897][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:41.897][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:41.898][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:41.899][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:41.900][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:41.900][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:41.901][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:41.902][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:41.902][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:41.903][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:41.904][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:41.905][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:41.906][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:41.906][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:41.907][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:41.908][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:41.908][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:41.909][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:41.910][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:41.911][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:41.911][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:41.912][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:41.913][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:03:41.914][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:03:41.914][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:41.915][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:41.916][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:03:41.917][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:03:41.917][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:41.918][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:41.919][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:03:41.919][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:03:41.920][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:41.921][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:41.922][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:03:41.922][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:03:41.923][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:41.924][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:41.925][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:03:41.926][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:03:41.926][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:41.927][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:41.928][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:03:41.929][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:03:41.929][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:41.930][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:41.931][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:03:41.932][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:03:41.932][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:41.933][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:41.934][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:03:41.935][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:03:41.935][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:41.936][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:41.937][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:03:41.937][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:03:41.938][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:41.939][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:41.940][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-09-07 16:03:41.940][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-09-07 16:03:41.941][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:41.942][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:41.943][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-09-07 16:03:41.943][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-09-07 16:03:41.944][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:41.945][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:41.945][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-09-07 16:03:41.946][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-09-07 16:03:41.947][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:41.948][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:41.948][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:41.949][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:41.950][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:41.951][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:41.951][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:41.952][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:41.953][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:41.953][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:41.954][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:41.955][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:41.956][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:41.956][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:41.957][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:41.958][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:41.958][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:41.959][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:41.960][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:41.961][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:41.961][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:41.962][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:41.963][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:41.964][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:41.965][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:41.965][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:41.966][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:03:41.967][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:03:41.967][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:41.968][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:41.969][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:03:41.970][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:03:41.970][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:41.971][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:41.972][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:03:41.973][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:03:41.973][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:41.974][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:41.975][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:41.976][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:41.976][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:41.977][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:41.978][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:41.979][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:41.979][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:41.980][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:41.981][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:41.982][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:41.982][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:41.983][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:41.984][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:41.985][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:41.985][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:41.986][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:41.987][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:41.987][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:41.988][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:41.989][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:41.989][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:41.990][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:41.991][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:41.992][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:41.992][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:41.993][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:41.994][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:41.994][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:41.995][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:41.996][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:41.997][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:41.997][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:41.998][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:41.999][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:41.999][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:42.000][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:42.006][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [171871699, 1-(2-aminothiazol-5-yl)butane-1,2,4-triol, 1-(2-amino-5-thiazolyl)butane-1,2,4-triol, 1-(2-amino-1,3-thiazol-5-yl)butane-1,2,4-triol, 1-(2-azanyl-1,3-thiazol-5-yl)butane-1,2,4-triol, ...].
biodb.DEBUG[2024-09-07 16:03:42.007][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-09-07 16:03:42.008][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-09-07 16:03:42.010][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:03:42.011][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:03:42.011][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:03:42.015][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:03:42.016][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:03:42.017][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:03:42.017][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:03:42.022][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18:226.2[MolecularWeight]&retmax=3".
biodb.DEBUG[2024-09-07 16:03:42.025][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-09-07 16:03:42.031][cch$loadFileContent] Trying to load 1 files from cache: [1]: "69c19f6998e271aebdcd09a030d9b450".
biodb.TRACE[2024-09-07 16:03:42.032][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-09-07 16:03:42.033][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/69c19f6998e271aebdcd09a030d9b450.content".
biodb.DEBUG[2024-09-07 16:03:42.035][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-09-07 16:03:42.036][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:03:42.037][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:03:42.037][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:03:42.042][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:03:42.042][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:03:42.043][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:03:42.044][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:03:42.045][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:42.045][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:42.046][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:42.047][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:42.047][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:42.048][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:42.049][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:42.050][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:42.050][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:42.051][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:42.052][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:42.053][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:42.054][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:42.054][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:42.055][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:42.056][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:42.057][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:42.057][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:42.058][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:42.059][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:42.060][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:42.060][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:42.061][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:42.062][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:42.062][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:42.063][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:42.064][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:42.065][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:42.065][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:42.066][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:42.067][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:42.068][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:42.068][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:42.069][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:42.070][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:42.070][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:42.071][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:42.072][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:42.073][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:42.073][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:42.074][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:42.075][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:42.076][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:42.076][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:42.077][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:42.078][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:42.078][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:42.079][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:42.080][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:03:42.081][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:03:42.081][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:42.082][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:42.083][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:03:42.084][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:03:42.084][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:42.085][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:42.086][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:03:42.086][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:03:42.087][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:42.088][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:42.089][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:03:42.089][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:03:42.090][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:42.091][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:42.091][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:03:42.092][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:03:42.093][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:42.093][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:42.094][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:03:42.095][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:03:42.096][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:42.096][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:42.097][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-09-07 16:03:42.098][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-09-07 16:03:42.098][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:42.099][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:42.100][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-09-07 16:03:42.101][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-09-07 16:03:42.101][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:42.102][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:42.103][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:42.103][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:42.104][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:42.105][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:42.106][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:42.106][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:42.107][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:42.108][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:42.108][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:42.109][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:42.110][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:42.111][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:42.111][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:42.112][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:42.113][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:42.113][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:42.114][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:03:42.115][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:03:42.116][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:42.116][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:42.117][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:03:42.118][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:03:42.118][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:42.119][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:42.120][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:42.121][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:42.121][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:42.122][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:42.123][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:42.123][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:42.124][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:42.125][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:42.126][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:42.126][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:42.127][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:42.128][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:42.128][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:42.129][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:42.130][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:42.131][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:42.131][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:42.132][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:42.133][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:42.133][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:42.134][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:42.135][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:42.136][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:42.136][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:42.137][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-09-07 16:03:42.138][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-09-07 16:03:42.138][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:42.139][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:42.140][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-09-07 16:03:42.141][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-09-07 16:03:42.141][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:42.142][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:42.143][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-09-07 16:03:42.143][private$selectFields]
biodb.TRACE[2024-09-07 16:03:42.144][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-09-07 16:03:42.145][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-09-07 16:03:42.145][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-09-07 16:03:42.146][ef$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:42.147][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:42.148][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:42.148][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:42.149][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:42.150][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:42.150][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:42.151][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:42.152][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:42.152][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:42.153][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:42.154][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:42.155][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:42.156][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:42.156][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:42.157][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:42.158][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:42.158][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:42.159][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:42.160][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:42.160][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:42.161][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:42.162][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:42.163][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:42.163][ef$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:03:42.164][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:03:42.165][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:42.165][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:42.166][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:03:42.167][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:03:42.167][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:42.168][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:42.169][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:03:42.170][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:03:42.170][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:42.171][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:42.172][ef$get] Asked field names are: logp.
biodb.TRACE[2024-09-07 16:03:42.172][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-09-07 16:03:42.173][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:42.174][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:42.174][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:42.175][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:42.176][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:42.176][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:42.177][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:42.178][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:42.179][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:42.179][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:42.180][ef$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:03:42.181][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:03:42.181][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:42.182][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:42.183][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:42.183][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:42.184][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:42.185][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:42.185][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:42.186][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:42.187][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:42.188][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:42.188][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:42.189][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:42.190][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:42.190][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:42.191][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-09-07 16:03:42.192][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-09-07 16:03:42.193][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:42.193][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:42.194][ef$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:42.195][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:42.195][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:42.196][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:42.197][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:42.198][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:42.198][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:42.199][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:42.200][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:42.200][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:42.201][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:42.202][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:42.202][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:42.203][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:42.204][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:42.204][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:42.205][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:42.206][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:42.206][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:42.207][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:42.208][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:42.209][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:42.209][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:42.210][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:42.211][ef$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:03:42.211][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:03:42.212][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:42.213][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:42.213][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:03:42.214][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:03:42.215][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:42.215][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:42.216][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:03:42.217][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:03:42.218][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:42.218][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:42.219][ef$get] Asked field names are: logp.
biodb.TRACE[2024-09-07 16:03:42.220][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-09-07 16:03:42.220][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:42.221][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:42.222][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:42.222][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:42.223][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:42.224][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:42.224][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:42.225][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:42.226][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:42.227][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:42.227][ef$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:03:42.228][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:03:42.229][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:42.229][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:42.230][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:42.231][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:42.231][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:42.232][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:42.233][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:42.234][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:42.234][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:42.235][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:42.236][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:42.237][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:42.237][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:42.238][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:42.239][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-09-07 16:03:42.239][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-09-07 16:03:42.240][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:42.241][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:42.242][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-09-07 16:03:42.242][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-09-07 16:03:42.243][ef$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:42.244][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:42.244][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:42.245][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:42.246][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:42.247][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:42.247][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:42.248][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:42.249][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:42.249][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:42.250][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:42.251][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:42.252][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:42.252][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:42.253][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:42.254][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:42.254][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:42.255][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:42.256][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:42.256][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:42.257][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:42.258][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:42.259][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:42.259][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:42.260][ef$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:03:42.261][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:03:42.261][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:42.262][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:42.263][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:03:42.263][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:03:42.264][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:42.265][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:42.265][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:03:42.272][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:03:42.273][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:42.274][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:42.274][ef$get] Asked field names are: logp.
biodb.TRACE[2024-09-07 16:03:42.276][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-09-07 16:03:42.276][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:42.277][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:42.278][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:42.278][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:42.279][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:42.280][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:42.280][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:42.281][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:42.282][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:42.282][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:42.283][ef$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:03:42.284][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:03:42.285][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:42.285][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:42.286][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:42.287][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:42.287][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:42.288][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:42.289][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:42.289][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:42.290][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:42.291][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:42.291][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:42.292][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:42.293][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:42.294][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:42.294][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2024-09-07 16:03:42.295][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:42.296][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:42.297][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:42.297][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:42.298][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:42.299][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:42.300][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:42.300][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:42.301][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:42.302][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:42.302][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:42.303][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:42.304][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:42.305][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:42.305][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:42.306][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:42.307][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:42.308][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:42.308][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:42.309][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:42.310][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:42.310][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:42.311][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:42.312][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:42.313][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:42.313][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:42.314][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:42.315][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:42.315][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:42.316][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:42.317][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:42.318][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:42.318][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:42.319][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:42.320][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:42.320][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:42.321][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:42.322][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:42.323][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:42.323][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:42.324][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:42.325][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:42.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:42.326][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:42.327][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:42.328][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:42.328][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:42.329][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:42.330][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:42.331][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:42.331][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:42.332][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:42.333][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:42.334][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:42.334][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:42.335][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:42.336][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:42.336][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:42.337][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:42.338][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:42.339][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:42.339][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:42.340][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:42.341][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:42.341][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:42.342][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:42.343][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:42.344][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:42.344][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:42.345][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:42.346][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:42.346][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:42.347][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:03:42.348][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:03:42.349][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:42.349][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:42.350][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:03:42.351][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:03:42.352][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:42.352][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:42.353][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:03:42.354][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:03:42.354][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:42.355][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:42.356][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:03:42.357][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:03:42.357][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:42.358][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:42.359][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:03:42.359][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:03:42.360][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:42.361][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:42.362][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:03:42.362][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:03:42.363][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:42.364][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:42.365][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:03:42.365][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:03:42.366][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:42.367][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:42.367][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:03:42.368][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:03:42.369][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:42.369][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:42.370][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:03:42.371][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:03:42.372][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:42.372][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:42.373][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-09-07 16:03:42.374][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-09-07 16:03:42.375][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:42.375][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:42.376][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-09-07 16:03:42.377][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-09-07 16:03:42.377][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:42.378][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:42.379][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-09-07 16:03:42.380][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-09-07 16:03:42.380][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:42.381][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:42.382][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:42.383][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:42.383][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:42.384][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:42.385][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:42.385][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:42.386][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:42.387][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:42.387][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:42.388][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:42.389][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:42.390][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:42.390][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:42.391][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:42.392][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:42.393][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:42.393][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:42.394][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:42.395][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:42.395][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:42.396][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:42.397][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:42.398][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:42.398][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:42.399][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:03:42.400][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:03:42.401][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:42.401][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:42.402][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:03:42.403][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:03:42.404][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:42.404][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:42.405][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:03:42.406][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:03:42.406][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:42.407][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:42.408][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:42.409][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:42.410][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:42.410][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:42.411][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:42.412][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:42.412][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:42.413][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:42.414][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:42.415][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:42.415][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:42.416][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:42.417][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:42.418][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:42.418][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:42.419][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:42.420][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:42.420][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:42.421][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:42.422][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:42.423][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:42.423][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:42.424][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:42.425][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:42.425][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:42.426][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:42.427][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:42.428][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:42.428][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:42.429][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:42.430][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:42.430][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:42.431][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:42.432][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:42.433][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:42.434][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:42.440][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [171901106, 3,4-dihydroxy-4-(2-methyl-5-nitro-1H-imidazol-4-yl)butanenitrile, 3,4-dihydroxy-4-(2-methyl-5-nitro-1H-imidazol-4-yl)butanenitrile, 3,4-dihydroxy-4-(2-methyl-5-nitro-1H-imidazol-4-yl)butanenitrile, 4-(2-methyl-5-nitro-1H-imidazol-4-yl)-3,4-bis(oxidanyl)butanenitrile, ...].
biodb.DEBUG[2024-09-07 16:03:42.440][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:03:42.441][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:03:42.442][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:03:42.446][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:03:42.447][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:03:42.447][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:03:42.448][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:03:42.449][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:42.449][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:42.450][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:42.451][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:42.452][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:42.452][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:42.453][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:42.454][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:42.454][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:42.455][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:42.456][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:42.456][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:42.457][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:42.458][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:42.459][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:42.459][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:42.460][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:42.461][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:42.461][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:42.462][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:42.463][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:42.464][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:42.464][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:42.465][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:42.466][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:42.466][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:42.467][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:42.468][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:42.468][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:42.469][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:42.470][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:42.470][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:42.471][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:42.472][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:42.473][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:42.473][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:42.474][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:42.475][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:42.475][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:42.476][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:42.477][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:42.478][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:42.478][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:42.479][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:42.480][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:42.480][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:42.481][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:42.482][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:42.482][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:03:42.483][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:03:42.484][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:42.485][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:42.485][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:03:42.486][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:03:42.487][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:42.487][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:42.488][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:03:42.489][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:03:42.489][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:42.490][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:42.491][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:03:42.492][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:03:42.493][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:42.493][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:42.494][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:03:42.495][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:03:42.495][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:42.496][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:42.497][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:03:42.497][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:03:42.498][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:42.499][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:42.499][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-09-07 16:03:42.500][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-09-07 16:03:42.501][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:42.502][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:42.502][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-09-07 16:03:42.503][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-09-07 16:03:42.504][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:42.510][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:42.511][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:42.512][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:42.513][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:42.514][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:42.514][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:42.515][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:42.516][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:42.517][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:42.517][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:42.518][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:42.519][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:42.519][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:42.520][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:42.521][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:42.521][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:42.522][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:42.523][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:03:42.524][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:03:42.524][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:42.525][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:42.526][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:03:42.526][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:03:42.527][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:42.528][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:42.529][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:42.529][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:42.530][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:42.531][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:42.531][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:42.532][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:42.533][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:42.534][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:42.534][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:42.535][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:42.536][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:42.536][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:42.537][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:42.538][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:42.539][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:42.539][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:42.540][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:42.541][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:42.542][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:42.542][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:42.543][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:42.544][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:42.544][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:42.545][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:42.546][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-09-07 16:03:42.547][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-09-07 16:03:42.547][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:42.548][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:42.549][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-09-07 16:03:42.549][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-09-07 16:03:42.550][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:42.551][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:42.551][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-09-07 16:03:42.552][private$selectFields]
biodb.TRACE[2024-09-07 16:03:42.553][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-09-07 16:03:42.553][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-09-07 16:03:42.554][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-09-07 16:03:42.555][ef$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:42.556][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:42.557][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:42.557][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:42.558][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:42.559][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:42.559][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:42.560][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:42.561][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:42.562][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:42.562][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:42.563][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:42.564][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:42.564][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:42.565][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:42.566][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:42.566][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:42.567][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:42.568][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:42.568][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:42.569][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:42.570][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:42.571][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:42.571][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:42.572][ef$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:03:42.573][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:03:42.573][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:42.574][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:42.575][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:03:42.575][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:03:42.576][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:42.577][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:42.578][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:03:42.578][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:03:42.579][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:42.580][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:42.580][ef$get] Asked field names are: logp.
biodb.TRACE[2024-09-07 16:03:42.581][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-09-07 16:03:42.582][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:42.582][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:42.583][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:42.584][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:42.585][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:42.585][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:42.586][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:42.587][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:42.587][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:42.588][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:42.589][ef$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:03:42.589][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:03:42.590][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:42.591][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:42.592][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:42.592][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:42.593][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:42.594][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:42.594][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:42.595][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:42.596][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:42.596][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:42.597][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:42.598][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:42.599][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:42.599][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:42.600][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-09-07 16:03:42.601][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-09-07 16:03:42.601][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:42.602][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:42.603][ef$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:42.604][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:42.604][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:42.605][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:42.606][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:42.606][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:42.607][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:42.608][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:42.608][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:42.609][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:42.610][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:42.611][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:42.611][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:42.612][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:42.613][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:42.613][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:42.614][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:42.615][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:42.615][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:42.616][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:42.617][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:42.618][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:42.618][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:42.619][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:42.620][ef$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:03:42.620][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:03:42.621][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:42.622][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:42.622][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:03:42.623][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:03:42.624][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:42.625][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:42.625][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:03:42.626][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:03:42.627][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:42.627][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:42.628][ef$get] Asked field names are: logp.
biodb.TRACE[2024-09-07 16:03:42.629][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-09-07 16:03:42.629][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:42.630][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:42.631][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:42.631][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:42.632][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:42.633][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:42.634][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:42.634][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:42.635][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:42.636][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:42.636][ef$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:03:42.637][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:03:42.638][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:42.638][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:42.639][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:42.640][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:42.640][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:42.641][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:42.642][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:42.643][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:42.643][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:42.644][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:42.645][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:42.645][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:42.646][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:42.647][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:42.647][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-09-07 16:03:42.648][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-09-07 16:03:42.649][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:42.649][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:42.650][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-09-07 16:03:42.651][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-09-07 16:03:42.652][ef$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:42.652][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:42.653][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:42.654][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:42.654][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:42.655][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:42.656][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:42.656][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:42.657][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:42.658][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:42.659][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:42.659][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:42.660][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:42.661][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:42.661][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:42.662][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:42.663][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:42.663][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:42.664][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:42.665][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:42.665][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:42.666][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:42.667][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:42.667][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:42.668][ef$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:03:42.669][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:03:42.670][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:42.670][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:42.671][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:03:42.672][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:03:42.673][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:42.673][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:42.674][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:03:42.675][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:03:42.675][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:42.676][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:42.677][ef$get] Asked field names are: logp.
biodb.TRACE[2024-09-07 16:03:42.677][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-09-07 16:03:42.678][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:42.679][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:42.679][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:42.680][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:42.681][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:42.682][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:42.682][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:42.683][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:42.684][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:42.684][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:42.685][ef$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:03:42.686][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:03:42.686][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:42.687][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:42.688][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:42.689][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:42.689][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:42.690][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:42.691][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:42.691][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:42.692][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:42.693][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:42.693][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:42.694][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:42.695][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:42.695][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:42.696][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2024-09-07 16:03:42.697][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:42.698][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:42.698][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:42.699][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:42.700][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:42.701][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:42.701][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:42.702][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:42.703][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:42.703][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:42.704][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:42.705][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:42.706][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:42.706][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:42.707][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:42.708][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:42.708][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:42.709][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:42.710][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:42.711][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:42.711][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:42.712][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:42.713][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:42.713][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:42.714][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:42.715][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:42.716][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:42.716][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:42.717][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:42.718][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:42.719][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:42.719][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:42.720][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:42.721][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:42.721][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:42.722][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:42.723][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:42.724][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:42.724][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:42.725][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:42.726][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:42.727][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:42.727][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:42.728][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:42.729][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:42.729][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:42.730][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:42.731][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:42.732][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:42.732][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:42.733][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:42.734][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:42.734][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:42.735][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:42.736][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:42.737][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:42.737][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:42.738][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:42.739][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:42.739][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:42.740][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:42.741][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:42.747][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:42.748][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:42.749][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:42.750][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:42.751][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:42.752][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:42.752][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:42.753][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:42.754][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:42.755][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:42.755][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:03:42.756][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:03:42.757][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:42.758][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:42.758][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:03:42.759][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:03:42.760][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:42.760][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:42.761][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:03:42.762][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:03:42.763][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:42.763][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:42.764][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:03:42.765][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:03:42.766][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:42.766][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:42.767][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:03:42.768][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:03:42.768][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:42.769][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:42.770][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:03:42.771][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:03:42.771][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:42.772][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:42.773][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:03:42.774][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:03:42.774][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:42.775][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:42.776][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:03:42.777][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:03:42.777][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:42.778][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:42.779][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:03:42.779][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:03:42.780][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:42.781][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:42.782][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-09-07 16:03:42.782][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-09-07 16:03:42.783][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:42.784][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:42.784][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-09-07 16:03:42.785][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-09-07 16:03:42.786][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:42.787][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:42.787][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-09-07 16:03:42.788][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-09-07 16:03:42.789][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:42.789][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:42.790][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:42.791][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:42.792][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:42.792][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:42.793][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:42.794][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:42.794][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:42.795][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:42.796][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:42.797][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:42.797][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:42.798][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:42.799][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:42.800][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:42.800][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:42.801][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:42.802][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:42.802][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:42.803][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:42.804][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:42.805][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:42.805][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:42.806][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:42.807][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:42.807][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:03:42.808][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:03:42.809][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:42.810][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:42.810][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:03:42.811][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:03:42.812][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:42.812][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:42.813][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:03:42.814][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:03:42.815][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:42.815][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:42.816][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:42.817][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:42.818][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:42.818][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:42.819][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:42.820][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:42.820][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:42.821][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:42.822][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:42.823][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:42.823][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:42.824][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:42.825][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:42.826][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:42.826][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:42.827][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:42.828][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:42.828][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:42.829][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:42.830][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:42.830][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:42.831][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:42.832][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:42.833][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:42.833][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:42.834][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:42.835][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:42.835][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:42.836][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:42.837][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:42.838][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:42.838][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:42.839][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:42.840][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:42.840][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:42.841][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:42.847][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [171901072, 4-(5-fluoro-2-methoxy-3-pyridyl)-3,4-dihydroxy-butanenitrile, 4-(5-fluoro-2-methoxy-3-pyridinyl)-3,4-dihydroxybutanenitrile, 4-(5-fluoro-2-methoxypyridin-3-yl)-3,4-dihydroxybutanenitrile, 4-(5-fluoranyl-2-methoxy-pyridin-3-yl)-3,4-bis(oxidanyl)butanenitrile, ...].
biodb.DEBUG[2024-09-07 16:03:42.848][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:03:42.849][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:03:42.849][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:03:42.854][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:03:42.854][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:03:42.855][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:03:42.856][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:03:42.856][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:42.857][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:42.858][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:42.859][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:42.859][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:42.860][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:42.861][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:42.862][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:42.862][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:42.863][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:42.864][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:42.865][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:42.865][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:42.866][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:42.867][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:42.867][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:42.868][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:42.869][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:42.870][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:42.870][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:42.871][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:42.872][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:42.873][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:42.873][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:42.874][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:42.875][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:42.876][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:42.876][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:42.877][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:42.878][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:42.878][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:42.879][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:42.880][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:42.881][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:42.882][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:42.882][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:42.883][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:42.884][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:42.884][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:42.885][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:42.886][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:42.887][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:42.887][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:42.888][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:42.889][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:42.890][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:42.890][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:42.891][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:42.892][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:03:42.892][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:03:42.893][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:42.894][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:42.895][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:03:42.895][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:03:42.896][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:42.897][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:42.897][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:03:42.898][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:03:42.899][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:42.899][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:42.900][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:03:42.901][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:03:42.902][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:42.902][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:42.903][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:03:42.904][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:03:42.904][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:42.905][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:42.906][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:03:42.907][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:03:42.907][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:42.908][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:42.909][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-09-07 16:03:42.909][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-09-07 16:03:42.910][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:42.911][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:42.912][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-09-07 16:03:42.912][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-09-07 16:03:42.913][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:42.914][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:42.915][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:42.915][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:42.916][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:42.917][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:42.917][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:42.918][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:42.919][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:42.920][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:42.920][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:42.921][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:42.922][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:42.922][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:42.923][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:42.924][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:42.924][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:42.925][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:42.926][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:03:42.927][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:03:42.927][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:42.928][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:42.929][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:03:42.929][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:03:42.930][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:42.931][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:42.932][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:42.932][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:42.933][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:42.934][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:42.934][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:42.935][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:42.936][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:42.937][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:42.938][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:42.938][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:42.939][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:42.940][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:42.940][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:42.941][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:42.942][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:42.943][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:42.943][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:42.944][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:42.945][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:42.945][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:42.946][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:42.947][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:42.948][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:42.948][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:42.949][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-09-07 16:03:42.950][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-09-07 16:03:42.950][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:42.951][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:42.952][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-09-07 16:03:42.952][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-09-07 16:03:42.953][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:42.954][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:42.955][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-09-07 16:03:42.955][private$selectFields]
biodb.TRACE[2024-09-07 16:03:42.956][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-09-07 16:03:42.957][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-09-07 16:03:42.957][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-09-07 16:03:42.958][ef$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:42.959][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:42.959][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:42.960][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:42.961][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:42.962][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:42.962][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:42.963][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:42.964][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:42.964][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:42.965][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:42.966][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:42.966][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:42.967][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:42.968][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:42.969][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:42.969][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:42.970][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:42.971][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:42.971][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:42.972][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:42.973][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:42.974][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:42.974][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:42.975][ef$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:03:42.976][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:03:42.976][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:42.977][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:42.978][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:03:42.979][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:03:42.979][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:42.980][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:42.981][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:03:42.987][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:03:42.988][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:42.989][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:42.990][ef$get] Asked field names are: logp.
biodb.TRACE[2024-09-07 16:03:42.991][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-09-07 16:03:42.992][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:42.993][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:42.994][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:42.994][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:42.995][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:42.996][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:42.996][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:42.997][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:42.998][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:42.999][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:43.000][ef$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:03:43.000][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:03:43.001][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:43.002][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:43.002][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:43.003][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:43.004][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:43.005][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:43.005][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:43.006][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:43.007][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:43.008][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:43.008][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:43.009][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:43.010][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:43.010][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:43.011][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-09-07 16:03:43.012][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-09-07 16:03:43.013][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:43.013][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:43.014][ef$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:43.015][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:43.016][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:43.016][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:43.017][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:43.018][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:43.019][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:43.019][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:43.020][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:43.021][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:43.022][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:43.022][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:43.023][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:43.024][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:43.024][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:43.025][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:43.026][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:43.027][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:43.027][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:43.028][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:43.029][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:43.029][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:43.030][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:43.031][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:43.031][ef$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:03:43.032][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:03:43.033][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:43.034][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:43.034][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:03:43.035][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:03:43.036][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:43.036][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:43.037][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:03:43.038][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:03:43.039][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:43.039][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:43.040][ef$get] Asked field names are: logp.
biodb.TRACE[2024-09-07 16:03:43.041][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-09-07 16:03:43.042][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:43.042][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:43.043][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:43.044][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:43.045][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:43.046][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:43.046][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:43.047][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:43.048][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:43.048][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:43.049][ef$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:03:43.050][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:03:43.051][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:43.051][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:43.052][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:43.053][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:43.053][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:43.054][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:43.055][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:43.056][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:43.056][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:43.057][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:43.058][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:43.059][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:43.059][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:43.060][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:43.061][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-09-07 16:03:43.062][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-09-07 16:03:43.062][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:43.063][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:43.064][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-09-07 16:03:43.065][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-09-07 16:03:43.065][ef$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:43.066][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:43.067][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:43.068][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:43.068][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:43.069][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:43.070][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:43.071][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:43.071][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:43.072][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:43.073][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:43.074][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:43.074][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:43.075][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:43.076][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:43.077][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:43.077][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:43.078][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:43.079][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:43.080][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:43.080][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:43.081][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:43.082][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:43.083][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:43.083][ef$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:03:43.084][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:03:43.085][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:43.085][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:43.086][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:03:43.087][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:03:43.088][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:43.088][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:43.089][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:03:43.090][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:03:43.091][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:43.091][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:43.092][ef$get] Asked field names are: logp.
biodb.TRACE[2024-09-07 16:03:43.093][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-09-07 16:03:43.093][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:43.094][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:43.095][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:43.096][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:43.096][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:43.097][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:43.098][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:43.099][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:43.100][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:43.100][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:43.101][ef$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:03:43.102][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:03:43.102][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:43.103][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:43.104][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:43.105][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:43.105][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:43.106][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:43.107][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:43.107][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:43.108][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:43.109][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:43.110][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:43.111][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:43.111][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:43.112][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:43.113][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2024-09-07 16:03:43.114][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:43.114][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:43.115][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:43.116][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:43.117][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:43.118][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:43.119][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:43.119][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:43.120][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:43.121][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:43.121][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:43.122][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:43.123][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:43.124][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:43.125][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:43.125][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:43.126][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:43.127][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:43.127][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:43.128][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:43.129][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:43.130][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:43.130][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:43.131][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:43.132][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:43.133][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:43.133][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:43.134][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:43.135][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:43.136][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:43.136][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:43.137][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:43.138][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:43.139][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:43.139][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:43.140][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:43.141][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:43.142][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:43.142][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:43.143][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:43.144][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:43.144][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:43.145][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:43.146][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:43.146][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:43.147][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:43.148][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:43.149][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:43.149][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:43.150][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:43.151][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:43.151][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:43.152][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:43.153][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:43.154][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:43.154][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:43.155][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:43.156][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:43.157][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:43.158][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:43.158][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:43.159][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:43.160][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:43.161][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:43.161][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:43.162][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:43.163][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:43.163][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:43.164][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:43.165][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:43.166][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:43.166][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:43.167][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:03:43.168][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:03:43.168][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:43.169][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:43.170][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:03:43.171][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:03:43.171][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:43.172][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:43.173][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:03:43.173][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:03:43.174][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:43.175][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:43.176][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:03:43.176][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:03:43.177][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:43.178][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:43.179][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:03:43.179][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:03:43.180][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:43.181][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:43.181][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:03:43.182][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:03:43.183][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:43.184][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:43.184][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:03:43.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:03:43.186][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:43.187][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:43.188][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:03:43.188][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:03:43.189][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:43.190][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:43.190][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:03:43.191][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:03:43.192][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:43.193][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:43.194][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-09-07 16:03:43.194][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-09-07 16:03:43.195][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:43.196][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:43.197][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-09-07 16:03:43.197][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-09-07 16:03:43.198][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:43.199][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:43.199][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-09-07 16:03:43.200][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-09-07 16:03:43.201][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:43.202][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:43.202][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:43.203][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:43.204][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:43.205][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:43.205][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:43.206][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:43.207][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:43.207][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:43.208][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:43.209][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:43.209][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:43.210][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:43.211][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:43.212][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:43.212][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:43.213][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:43.214][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:43.215][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:43.215][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:43.216][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:43.217][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:43.217][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:43.218][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:43.219][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:43.220][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:03:43.220][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:03:43.221][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:43.222][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:43.223][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:03:43.223][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:03:43.224][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:43.225][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:43.225][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:03:43.226][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:03:43.227][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:43.233][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:43.235][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:43.236][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:43.237][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:43.238][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:43.238][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:43.239][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:43.240][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:43.241][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:43.241][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:43.242][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:43.243][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:43.244][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:43.245][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:43.245][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:43.246][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:43.247][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:43.248][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:43.249][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:43.249][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:43.250][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:43.251][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:43.251][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:43.252][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:43.253][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:43.254][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:43.255][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:43.255][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:43.256][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:43.257][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:43.258][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:43.258][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:43.259][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:43.260][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:43.261][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:43.261][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:43.262][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:43.269][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [171877309, 4-(3-amino-4-cyano-1H-pyrazol-5-yl)-3,4-dihydroxy-butanoic acid, 4-(3-amino-4-cyano-1H-pyrazol-5-yl)-3,4-dihydroxybutanoic acid, 4-(3-amino-4-cyano-1H-pyrazol-5-yl)-3,4-dihydroxybutanoic acid, 4-(3-azanyl-4-cyano-1H-pyrazol-5-yl)-3,4-bis(oxidanyl)butanoic acid, ...].
biodb.DEBUG[2024-09-07 16:03:43.269][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-09-07 16:03:43.270][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2024-09-07 16:03:43.275][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:43.276][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:43.276][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:43.277][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:43.278][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:43.279][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:43.279][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:43.280][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:43.281][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:43.282][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:43.282][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:43.283][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:43.284][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:43.284][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:43.285][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:43.286][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:43.287][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:43.287][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:43.288][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:43.289][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:43.289][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:43.290][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:43.291][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:43.291][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:43.292][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:43.293][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:43.294][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:43.294][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:43.295][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:43.296][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:43.297][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:43.297][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:03:43.300][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:03:43.301][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:03:43.302][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:03:43.306][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:03:43.306][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:03:43.307][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:03:43.308][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:03:43.313][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.11358306:204.13358306[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2024-09-07 16:03:43.315][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-09-07 16:03:43.316][cch$loadFileContent] Trying to load 1 files from cache: [1]: "1279ae7853bbae0b1c59971aee79ce72".
biodb.TRACE[2024-09-07 16:03:43.318][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-09-07 16:03:43.319][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/1279ae7853bbae0b1c59971aee79ce72.content".
biodb.DEBUG[2024-09-07 16:03:43.320][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-09-07 16:03:43.321][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:03:43.322][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:03:43.322][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:03:43.326][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:03:43.327][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:03:43.328][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:03:43.329][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:03:43.329][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:43.330][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:43.331][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:43.332][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:43.332][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:43.333][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:43.334][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:43.334][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:43.335][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:43.336][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:43.337][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:43.337][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:43.338][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:43.339][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:43.339][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:43.340][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:43.341][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:43.342][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:43.342][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:43.343][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:43.344][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:43.345][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:43.345][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:43.346][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:43.347][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:43.348][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:43.349][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:43.349][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:43.350][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:43.351][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:43.352][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:43.352][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:43.353][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:43.354][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:43.354][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:43.355][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:43.356][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:43.357][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:43.358][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:43.358][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:43.359][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:43.360][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:43.361][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:43.361][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:43.362][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:43.363][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:43.363][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:43.364][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:43.365][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:03:43.366][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:03:43.366][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:43.367][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:43.368][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:03:43.369][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:03:43.369][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:43.370][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:43.371][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:03:43.372][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:03:43.372][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:43.373][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:43.374][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:03:43.374][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:03:43.375][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:43.376][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:43.377][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:03:43.377][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:03:43.378][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:43.379][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:43.380][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:03:43.380][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:03:43.381][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:43.382][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:43.382][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-09-07 16:03:43.383][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-09-07 16:03:43.384][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:43.385][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:43.385][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-09-07 16:03:43.386][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-09-07 16:03:43.387][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:43.387][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:43.388][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:43.389][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:43.390][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:43.390][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:43.391][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:43.392][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:43.392][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:43.393][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:43.394][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:43.395][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:43.395][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:43.396][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:43.397][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:43.397][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:43.398][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:43.399][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:43.400][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:03:43.400][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:03:43.401][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:43.402][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:43.402][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:03:43.403][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:03:43.404][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:43.405][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:43.405][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:43.406][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:43.407][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:43.408][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:43.408][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:43.409][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:43.410][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:43.411][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:43.411][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:43.412][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:43.413][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:43.414][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:43.414][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:43.415][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:43.416][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:43.416][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:43.417][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:43.418][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:43.419][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:43.419][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:43.420][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:43.421][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:43.421][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:43.422][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:43.423][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-09-07 16:03:43.423][private$selectFields]
biodb.TRACE[2024-09-07 16:03:43.424][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-09-07 16:03:43.425][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-09-07 16:03:43.426][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-09-07 16:03:43.426][ef$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:43.427][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:43.428][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:43.429][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:43.430][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:43.430][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:43.431][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:43.432][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:43.433][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:43.433][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:43.434][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:43.435][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:43.435][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:43.436][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:43.437][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:43.437][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:43.438][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:43.439][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:43.440][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:43.441][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:43.441][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:43.442][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:43.443][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:43.443][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:43.444][ef$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:03:43.445][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:03:43.446][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:43.446][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:43.447][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:03:43.448][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:03:43.448][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:43.449][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:43.450][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:03:43.451][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:03:43.451][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:43.452][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:43.453][ef$get] Asked field names are: logp.
biodb.TRACE[2024-09-07 16:03:43.454][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-09-07 16:03:43.454][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:43.455][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:43.456][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:43.456][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:43.457][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:43.458][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:43.459][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:43.459][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:43.460][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:43.461][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:43.461][ef$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:03:43.462][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:03:43.463][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:43.463][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:43.464][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:43.465][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:43.466][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:43.466][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:43.467][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:43.468][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:43.468][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:43.469][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:43.470][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:43.471][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:43.471][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:43.472][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:43.473][ef$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:43.474][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:43.474][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:43.481][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:43.482][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:43.483][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:43.484][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:43.484][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:43.485][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:43.486][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:43.487][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:43.487][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:43.488][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:43.489][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:43.489][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:43.490][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:43.491][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:43.492][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:43.492][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:43.493][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:43.494][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:43.494][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:43.495][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:43.496][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:43.496][ef$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:03:43.497][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:03:43.498][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:43.499][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:43.499][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:03:43.500][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:03:43.501][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:43.501][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:43.502][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:03:43.503][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:03:43.504][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:43.504][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:43.505][ef$get] Asked field names are: logp.
biodb.TRACE[2024-09-07 16:03:43.506][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-09-07 16:03:43.506][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:43.507][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:43.508][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:43.509][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:43.509][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:43.510][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:43.511][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:43.512][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:43.512][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:43.513][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:43.514][ef$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:03:43.514][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:03:43.515][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:43.516][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:43.517][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:43.517][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:43.518][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:43.519][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:43.519][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:43.520][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:43.521][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:43.522][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:43.522][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:43.523][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:43.524][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:43.525][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:43.525][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-09-07 16:03:43.526][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-09-07 16:03:43.527][ef$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:43.528][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:43.528][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:43.529][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:43.530][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:43.531][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:43.531][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:43.532][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:43.533][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:43.533][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:43.534][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:43.535][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:43.536][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:43.536][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:43.537][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:43.538][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:43.538][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:43.539][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:43.540][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:43.540][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:43.541][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:43.542][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:43.542][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:43.543][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:43.544][ef$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:03:43.545][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:03:43.545][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:43.546][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:43.547][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:03:43.547][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:03:43.548][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:43.549][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:43.549][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:03:43.550][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:03:43.551][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:43.551][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:43.552][ef$get] Asked field names are: logp.
biodb.TRACE[2024-09-07 16:03:43.553][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-09-07 16:03:43.554][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:43.554][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:43.555][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:43.556][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:43.556][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:43.557][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:43.558][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:43.558][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:43.559][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:43.560][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:43.561][ef$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:03:43.561][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:03:43.562][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:43.563][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:43.564][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:43.564][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:43.565][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:43.566][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:43.566][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:43.567][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:43.568][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:43.569][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:43.569][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:43.570][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:43.571][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:43.572][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:43.572][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2024-09-07 16:03:43.573][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:43.574][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:43.575][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:43.575][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:43.576][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:43.577][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:43.577][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:43.578][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:43.579][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:43.580][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:43.580][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:43.581][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:43.582][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:43.582][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:43.583][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:43.584][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:43.585][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:43.585][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:43.586][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:43.587][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:43.587][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:43.588][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:43.589][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:43.589][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:43.590][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:43.591][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:43.592][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:43.592][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:43.593][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:43.594][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:43.595][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:43.595][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:43.596][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:43.597][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:43.598][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:43.598][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:43.599][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:43.600][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:43.601][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:43.601][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:43.602][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:43.603][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:43.603][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:43.604][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:43.605][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:43.606][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:43.606][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:43.607][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:43.608][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:43.609][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:43.609][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:43.610][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:43.611][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:43.612][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:43.612][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:43.613][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:43.614][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:43.615][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:43.615][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:43.616][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:43.617][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:43.618][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:43.618][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:43.619][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:43.620][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:43.620][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:43.621][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:43.622][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:43.623][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:43.623][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:43.624][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:43.625][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:43.626][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:03:43.626][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:03:43.627][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:43.628][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:43.628][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:03:43.629][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:03:43.630][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:43.631][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:43.631][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:03:43.632][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:03:43.633][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:43.633][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:43.634][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:03:43.635][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:03:43.636][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:43.636][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:43.637][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:03:43.638][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:03:43.639][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:43.639][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:43.640][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:03:43.641][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:03:43.642][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:43.642][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:43.643][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:03:43.644][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:03:43.644][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:43.645][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:43.646][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:03:43.647][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:03:43.647][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:43.648][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:43.649][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:03:43.650][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:03:43.650][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:43.651][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:43.652][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-09-07 16:03:43.653][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-09-07 16:03:43.653][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:43.654][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:43.655][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-09-07 16:03:43.655][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-09-07 16:03:43.656][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:43.657][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:43.657][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-09-07 16:03:43.658][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-09-07 16:03:43.659][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:43.660][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:43.660][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:43.661][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:43.662][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:43.663][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:43.663][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:43.664][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:43.665][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:43.665][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:43.666][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:43.667][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:43.668][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:43.668][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:43.669][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:43.670][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:43.671][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:43.671][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:43.672][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:43.673][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:43.673][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:43.674][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:43.675][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:43.676][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:43.676][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:43.677][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:43.678][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:03:43.679][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:03:43.679][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:43.680][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:43.681][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:03:43.682][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:03:43.682][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:43.683][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:43.684][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:03:43.684][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:03:43.685][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:43.686][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:43.687][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:43.688][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:43.688][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:43.689][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:43.690][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:43.690][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:43.691][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:43.692][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:43.693][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:43.693][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:43.694][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:43.695][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:43.696][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:43.697][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:43.697][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:43.698][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:43.699][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:43.699][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:43.700][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:43.701][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:43.702][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:43.702][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:43.703][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:43.704][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:43.705][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:43.705][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:43.706][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:43.707][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:43.708][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:43.708][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:43.709][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:43.710][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:43.710][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:43.711][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:43.712][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:43.713][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:43.726][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [171853852, 3,3-dimethyl-6-phenyl-tetrahydropyran-2-one, 3,3-dimethyl-6-phenyl-2-oxanone, 3,3-dimethyl-6-phenyloxan-2-one, 3,3-dimethyl-6-phenyl-oxan-2-one, ...].
biodb.DEBUG[2024-09-07 16:03:43.727][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:03:43.727][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:03:43.728][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:03:43.732][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:03:43.733][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:03:43.733][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:03:43.734][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:03:43.735][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:43.736][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:43.736][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:43.737][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:43.738][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:43.738][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:43.739][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:43.740][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:43.740][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:43.741][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:43.742][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:43.743][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:43.744][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:43.744][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:43.745][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:43.746][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:43.746][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:43.747][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:43.748][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:43.749][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:43.749][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:43.750][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:43.751][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:43.752][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:43.752][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:43.753][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:43.754][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:43.755][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:43.755][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:43.756][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:43.757][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:43.758][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:43.758][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:43.759][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:43.760][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:43.761][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:43.761][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:43.762][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:43.763][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:43.764][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:43.764][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:43.765][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:43.766][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:43.766][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:43.767][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:43.768][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:43.769][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:43.769][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:43.770][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:03:43.771][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:03:43.771][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:43.772][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:43.773][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:03:43.774][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:03:43.774][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:43.775][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:43.776][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:03:43.776][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:03:43.777][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:43.778][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:43.778][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:03:43.779][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:03:43.780][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:43.780][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:43.781][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:03:43.782][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:03:43.783][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:43.783][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:43.784][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:03:43.785][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:03:43.785][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:43.786][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:43.787][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-09-07 16:03:43.788][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-09-07 16:03:43.789][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:43.789][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:43.790][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-09-07 16:03:43.791][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-09-07 16:03:43.792][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:43.792][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:43.793][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:43.794][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:43.795][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:43.795][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:43.796][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:43.797][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:43.798][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:43.798][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:43.799][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:43.800][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:43.801][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:43.801][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:43.802][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:43.803][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:43.804][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:43.805][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:43.805][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:03:43.806][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:03:43.807][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:43.808][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:43.808][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:03:43.809][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:03:43.810][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:43.811][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:43.811][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:43.812][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:43.813][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:43.814][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:43.814][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:43.815][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:43.816][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:43.817][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:43.817][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:43.818][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:43.819][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:43.820][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:43.820][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:43.821][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:43.822][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:43.823][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:43.823][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:43.824][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:43.825][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:43.826][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:43.826][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:43.827][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:43.828][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:43.828][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:43.829][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-09-07 16:03:43.830][private$selectFields]
biodb.TRACE[2024-09-07 16:03:43.831][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-09-07 16:03:43.831][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-09-07 16:03:43.832][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-09-07 16:03:43.833][ef$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:43.834][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:43.834][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:43.835][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:43.836][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:43.837][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:43.837][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:43.838][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:43.839][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:43.840][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:43.841][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:43.841][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:43.842][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:43.843][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:43.844][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:43.844][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:43.845][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:43.846][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:43.847][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:43.847][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:43.848][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:43.849][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:43.849][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:43.850][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:43.851][ef$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:03:43.852][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:03:43.852][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:43.853][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:43.854][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:03:43.855][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:03:43.855][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:43.856][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:43.857][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:03:43.858][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:03:43.858][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:43.859][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:43.860][ef$get] Asked field names are: logp.
biodb.TRACE[2024-09-07 16:03:43.861][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-09-07 16:03:43.861][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:43.862][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:43.863][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:43.864][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:43.864][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:43.865][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:43.866][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:43.867][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:43.867][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:43.868][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:43.869][ef$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:03:43.870][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:03:43.870][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:43.871][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:43.872][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:43.873][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:43.873][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:43.874][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:43.875][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:43.876][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:43.876][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:43.877][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:43.878][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:43.879][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:43.879][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:43.880][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:43.881][ef$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:43.882][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:43.882][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:43.883][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:43.884][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:43.885][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:43.885][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:43.886][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:43.887][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:43.887][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:43.888][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:43.889][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:43.889][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:43.890][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:43.891][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:43.892][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:43.892][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:43.893][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:43.894][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:43.894][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:43.895][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:43.896][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:43.897][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:43.897][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:43.898][ef$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:03:43.899][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:03:43.899][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:43.900][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:43.901][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:03:43.902][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:03:43.903][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:43.903][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:43.904][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:03:43.905][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:03:43.906][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:43.906][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:43.907][ef$get] Asked field names are: logp.
biodb.TRACE[2024-09-07 16:03:43.908][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-09-07 16:03:43.908][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:43.909][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:43.910][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:43.911][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:43.911][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:43.912][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:43.913][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:43.913][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:43.914][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:43.915][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:43.916][ef$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:03:43.917][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:03:43.917][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:43.918][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:43.919][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:43.919][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:43.920][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:43.921][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:43.921][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:43.922][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:43.923][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:43.924][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:43.924][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:43.925][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:43.926][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:43.927][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:43.928][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-09-07 16:03:43.928][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-09-07 16:03:43.929][ef$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:43.930][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:43.931][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:43.931][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:43.932][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:43.933][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:43.933][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:43.934][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:43.935][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:43.936][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:43.936][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:43.937][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:43.938][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:43.939][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:43.939][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:43.940][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:43.941][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:43.942][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:43.942][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:43.943][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:43.944][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:43.945][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:43.946][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:43.946][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:43.947][ef$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:03:43.948][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:03:43.949][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:43.949][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:43.950][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:03:43.951][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:03:43.951][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:43.952][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:43.953][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:03:43.954][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:03:43.954][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:43.955][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:43.956][ef$get] Asked field names are: logp.
biodb.TRACE[2024-09-07 16:03:43.957][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-09-07 16:03:43.957][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:43.958][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:43.959][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:43.960][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:43.960][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:43.961][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:43.962][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:43.963][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:43.969][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:43.970][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:43.971][ef$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:03:43.972][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:03:43.973][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:43.974][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:43.975][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:43.976][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:43.976][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:43.977][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:43.978][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:43.979][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:43.979][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:43.980][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:43.981][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:43.982][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:43.982][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:43.983][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:43.984][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2024-09-07 16:03:43.984][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:43.985][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:43.986][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:43.987][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:43.987][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:43.988][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:43.989][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:43.990][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:43.990][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:43.991][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:43.992][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:43.993][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:43.993][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:43.994][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:43.995][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:43.996][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:43.996][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:43.997][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:43.998][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:43.999][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:44.000][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:44.000][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:44.001][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:44.002][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:44.003][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:44.003][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:44.004][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:44.005][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:44.006][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:44.006][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:44.007][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:44.008][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:44.009][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:44.009][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:44.010][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:44.011][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:44.011][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:44.012][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:44.013][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:44.014][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:44.014][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:44.015][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:44.016][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:44.016][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:44.017][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:44.018][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:44.019][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:44.020][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:44.020][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:44.021][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:44.022][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:44.023][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:44.023][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:44.024][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:44.025][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:44.026][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:44.027][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:44.027][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:44.028][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:44.029][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:44.030][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:44.031][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:44.031][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:44.032][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:44.033][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:44.034][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:44.034][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:44.035][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:44.036][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:44.037][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:44.037][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:44.038][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:44.039][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:03:44.039][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:03:44.040][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:44.041][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:44.042][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:03:44.043][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:03:44.043][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:44.044][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:44.045][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:03:44.046][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:03:44.046][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:44.047][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:44.048][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:03:44.049][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:03:44.049][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:44.050][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:44.051][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:03:44.052][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:03:44.052][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:44.053][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:44.054][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:03:44.055][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:03:44.055][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:44.056][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:44.057][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:03:44.058][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:03:44.059][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:44.059][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:44.060][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:03:44.061][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:03:44.061][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:44.062][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:44.063][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:03:44.064][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:03:44.064][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:44.065][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:44.066][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-09-07 16:03:44.067][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-09-07 16:03:44.068][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:44.068][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:44.069][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-09-07 16:03:44.070][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-09-07 16:03:44.070][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:44.071][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:44.072][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-09-07 16:03:44.073][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-09-07 16:03:44.073][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:44.074][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:44.075][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:44.076][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:44.076][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:44.077][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:44.078][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:44.079][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:44.079][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:44.080][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:44.081][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:44.082][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:44.082][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:44.083][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:44.084][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:44.085][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:44.085][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:44.086][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:44.087][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:44.087][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:44.088][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:44.089][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:44.090][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:44.090][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:44.091][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:44.092][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:44.092][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:03:44.093][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:03:44.094][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:44.095][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:44.096][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:03:44.096][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:03:44.097][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:44.098][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:44.098][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:03:44.099][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:03:44.100][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:44.101][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:44.102][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:44.103][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:44.103][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:44.104][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:44.105][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:44.105][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:44.106][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:44.107][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:44.108][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:44.108][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:44.109][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:44.110][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:44.111][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:44.112][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:44.112][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:44.113][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:44.114][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:44.115][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:44.116][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:44.116][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:44.117][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:44.118][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:44.118][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:44.119][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:44.120][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:44.121][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:44.122][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:44.122][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:44.123][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:44.124][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:44.124][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:44.125][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:44.126][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:44.127][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:44.127][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:44.128][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:44.134][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [171846466, 1-methyl-3-(p-tolyl)hexahydropyrimidin-2-one, 1-methyl-3-(4-methylphenyl)-1,3-diazinan-2-one, 1-methyl-3-(4-methylphenyl)-1,3-diazinan-2-one, 1-methyl-3-(4-methylphenyl)-1,3-diazinan-2-one, ...].
biodb.DEBUG[2024-09-07 16:03:44.135][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:03:44.136][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:03:44.137][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:03:44.141][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:03:44.141][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:03:44.142][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:03:44.143][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:03:44.144][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:44.144][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:44.145][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:44.146][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:44.147][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:44.147][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:44.148][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:44.149][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:44.150][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:44.150][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:44.151][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:44.152][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:44.152][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:44.153][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:44.154][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:44.155][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:44.155][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:44.156][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:44.157][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:44.158][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:44.158][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:44.159][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:44.160][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:44.161][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:44.162][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:44.162][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:44.163][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:44.164][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:44.165][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:44.165][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:44.166][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:44.167][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:44.168][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:44.168][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:44.169][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:44.170][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:44.171][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:44.171][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:44.172][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:44.173][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:44.173][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:44.174][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:44.175][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:44.176][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:44.177][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:44.177][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:44.178][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:44.179][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:44.180][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:03:44.180][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:03:44.181][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:44.182][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:44.183][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:03:44.184][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:03:44.184][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:44.185][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:44.186][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:03:44.186][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:03:44.187][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:44.188][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:44.189][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:03:44.189][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:03:44.190][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:44.191][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:44.191][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:03:44.192][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:03:44.193][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:44.194][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:44.194][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:03:44.195][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:03:44.196][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:44.197][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:44.198][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-09-07 16:03:44.198][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-09-07 16:03:44.199][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:44.200][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:44.201][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-09-07 16:03:44.201][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-09-07 16:03:44.202][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:44.203][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:44.204][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:44.205][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:44.206][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:44.207][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:44.208][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:44.208][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:44.209][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:44.210][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:44.211][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:44.211][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:44.212][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:44.219][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:44.220][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:44.221][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:44.222][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:44.223][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:44.223][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:03:44.224][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:03:44.225][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:44.226][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:44.227][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:03:44.227][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:03:44.228][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:44.229][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:44.229][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:44.230][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:44.231][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:44.232][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:44.233][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:44.233][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:44.234][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:44.235][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:44.235][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:44.236][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:44.237][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:44.237][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:44.238][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:44.239][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:44.240][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:44.240][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:44.241][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:44.242][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:44.243][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:44.243][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:44.244][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:44.245][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:44.246][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:44.246][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:44.247][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-09-07 16:03:44.248][private$selectFields]
biodb.TRACE[2024-09-07 16:03:44.248][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-09-07 16:03:44.249][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-09-07 16:03:44.250][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-09-07 16:03:44.251][ef$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:44.251][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:44.252][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:44.253][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:44.253][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:44.254][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:44.255][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:44.256][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:44.256][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:44.257][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:44.258][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:44.258][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:44.259][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:44.260][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:44.261][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:44.261][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:44.262][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:44.263][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:44.264][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:44.264][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:44.265][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:44.266][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:44.266][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:44.267][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:44.268][ef$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:03:44.269][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:03:44.269][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:44.270][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:44.271][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:03:44.272][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:03:44.272][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:44.273][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:44.274][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:03:44.274][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:03:44.275][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:44.276][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:44.276][ef$get] Asked field names are: logp.
biodb.TRACE[2024-09-07 16:03:44.277][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-09-07 16:03:44.278][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:44.279][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:44.279][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:44.280][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:44.281][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:44.281][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:44.282][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:44.283][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:44.284][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:44.284][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:44.285][ef$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:03:44.286][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:03:44.286][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:44.287][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:44.288][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:44.289][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:44.289][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:44.290][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:44.291][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:44.292][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:44.292][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:44.293][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:44.294][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:44.294][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:44.295][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:44.296][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:44.296][ef$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:44.297][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:44.298][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:44.299][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:44.299][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:44.300][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:44.301][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:44.301][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:44.302][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:44.303][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:44.303][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:44.304][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:44.305][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:44.306][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:44.306][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:44.307][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:44.308][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:44.308][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:44.309][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:44.310][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:44.310][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:44.311][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:44.312][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:44.313][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:44.313][ef$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:03:44.314][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:03:44.315][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:44.315][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:44.316][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:03:44.317][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:03:44.317][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:44.318][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:44.319][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:03:44.320][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:03:44.320][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:44.321][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:44.322][ef$get] Asked field names are: logp.
biodb.TRACE[2024-09-07 16:03:44.322][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-09-07 16:03:44.323][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:44.324][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:44.325][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:44.325][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:44.326][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:44.327][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:44.328][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:44.328][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:44.329][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:44.330][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:44.330][ef$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:03:44.331][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:03:44.332][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:44.332][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:44.333][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:44.334][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:44.335][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:44.335][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:44.336][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:44.337][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:44.338][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:44.338][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:44.339][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:44.340][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:44.340][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:44.341][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:44.342][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-09-07 16:03:44.342][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-09-07 16:03:44.343][ef$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:44.344][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:44.345][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:44.345][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:44.346][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:44.347][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:44.348][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:44.348][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:44.349][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:44.350][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:44.350][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:44.351][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:44.352][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:44.353][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:44.353][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:44.354][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:44.355][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:44.355][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:44.356][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:44.357][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:44.358][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:44.358][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:44.359][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:44.360][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:44.360][ef$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:03:44.361][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:03:44.362][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:44.362][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:44.363][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:03:44.364][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:03:44.365][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:44.365][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:44.366][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:03:44.367][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:03:44.368][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:44.368][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:44.369][ef$get] Asked field names are: logp.
biodb.TRACE[2024-09-07 16:03:44.370][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-09-07 16:03:44.370][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:44.371][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:44.372][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:44.373][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:44.373][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:44.374][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:44.375][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:44.375][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:44.376][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:44.377][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:44.377][ef$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:03:44.378][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:03:44.379][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:44.379][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:44.380][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:44.381][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:44.382][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:44.382][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:44.383][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:44.384][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:44.385][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:44.385][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:44.386][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:44.387][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:44.387][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:44.388][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:44.389][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2024-09-07 16:03:44.390][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:44.390][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:44.391][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:44.392][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:44.392][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:44.393][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:44.394][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:44.395][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:44.396][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:44.396][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:44.397][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:44.398][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:44.399][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:44.399][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:44.400][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:44.401][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:44.401][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:44.402][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:44.403][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:44.403][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:44.404][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:44.405][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:44.406][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:44.407][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:44.408][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:44.408][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:44.409][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:44.410][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:44.411][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:44.411][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:44.412][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:44.413][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:44.413][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:44.414][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:44.415][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:44.416][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:44.417][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:44.417][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:44.418][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:44.419][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:44.420][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:44.420][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:44.421][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:44.422][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:44.422][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:44.423][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:44.424][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:44.424][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:44.425][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:44.426][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:44.427][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:44.427][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:44.428][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:44.429][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:44.430][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:44.430][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:44.431][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:44.432][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:44.432][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:44.433][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:44.434][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:44.435][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:44.435][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:44.436][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:44.437][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:44.438][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:44.438][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:44.439][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:44.440][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:44.440][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:44.441][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:44.442][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:44.443][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:03:44.443][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:03:44.444][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:44.445][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:44.445][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:03:44.446][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:03:44.447][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:44.448][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:44.448][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:03:44.449][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:03:44.450][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:44.450][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:44.451][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:03:44.452][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:03:44.453][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:44.453][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:44.460][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:03:44.461][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:03:44.462][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:44.463][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:44.464][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:03:44.464][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:03:44.465][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:44.466][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:44.467][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:03:44.468][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:03:44.468][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:44.469][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:44.470][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:03:44.470][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:03:44.471][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:44.472][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:44.473][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:03:44.473][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:03:44.474][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:44.475][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:44.476][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-09-07 16:03:44.476][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-09-07 16:03:44.477][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:44.478][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:44.479][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-09-07 16:03:44.479][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-09-07 16:03:44.480][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:44.481][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:44.481][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-09-07 16:03:44.482][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-09-07 16:03:44.483][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:44.484][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:44.484][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:44.485][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:44.486][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:44.487][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:44.487][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:44.488][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:44.489][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:44.490][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:44.490][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:44.491][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:44.492][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:44.492][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:44.493][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:44.494][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:44.495][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:44.495][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:44.496][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:44.497][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:44.498][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:44.498][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:44.499][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:44.500][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:44.501][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:44.501][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:44.502][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:03:44.503][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:03:44.504][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:44.505][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:44.505][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:03:44.506][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:03:44.507][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:44.508][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:44.508][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:03:44.509][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:03:44.510][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:44.511][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:44.511][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:44.512][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:44.513][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:44.514][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:44.514][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:44.515][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:44.516][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:44.517][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:44.517][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:44.518][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:44.519][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:44.519][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:44.520][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:44.521][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:44.522][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:44.522][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:44.523][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:44.524][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:44.525][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:44.525][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:44.526][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:44.527][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:44.527][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:44.528][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:44.529][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:44.530][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:44.530][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:44.531][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:44.532][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:44.533][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:44.533][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:44.534][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:44.535][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:44.535][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:44.536][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:44.537][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:44.544][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [171834268, N-[2-(6-methyl-5,6-dihydro-1H-indol-3-yl)ethyl]formamide, N-[2-(6-methyl-5,6-dihydro-1H-indol-3-yl)ethyl]formamide, N-[2-(6-methyl-5,6-dihydro-1H-indol-3-yl)ethyl]formamide, N-[2-(6-methyl-5,6-dihydro-1H-indol-3-yl)ethyl]methanamide, ...].
biodb.DEBUG[2024-09-07 16:03:44.544][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-09-07 16:03:44.545][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-09-07 16:03:44.547][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:03:44.548][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:03:44.549][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:03:44.553][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:03:44.554][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:03:44.554][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:03:44.555][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:03:44.560][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.04897142:226.06897142[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2024-09-07 16:03:44.563][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-09-07 16:03:44.564][cch$loadFileContent] Trying to load 1 files from cache: [1]: "6eb047352a5797ace7dc0cd8f5af7cbf".
biodb.TRACE[2024-09-07 16:03:44.565][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-09-07 16:03:44.566][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/6eb047352a5797ace7dc0cd8f5af7cbf.content".
biodb.DEBUG[2024-09-07 16:03:44.567][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-09-07 16:03:44.568][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:03:44.569][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:03:44.570][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:03:44.574][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:03:44.575][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:03:44.576][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:03:44.577][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:03:44.578][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:44.579][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:44.579][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:44.580][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:44.581][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:44.582][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:44.582][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:44.583][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:44.584][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:44.585][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:44.585][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:44.586][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:44.587][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:44.588][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:44.588][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:44.589][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:44.590][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:44.590][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:44.591][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:44.592][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:44.592][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:44.593][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:44.594][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:44.594][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:44.595][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:44.596][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:44.597][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:44.597][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:44.598][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:44.599][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:44.599][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:44.600][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:44.601][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:44.602][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:44.602][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:44.603][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:44.604][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:44.604][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:44.605][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:44.606][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:44.606][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:44.607][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:44.608][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:44.609][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:44.609][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:44.610][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:44.611][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:44.611][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:44.612][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:03:44.613][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:03:44.614][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:44.614][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:44.615][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:03:44.616][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:03:44.616][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:44.617][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:44.618][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:03:44.619][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:03:44.619][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:44.620][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:44.621][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:03:44.622][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:03:44.622][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:44.623][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:44.624][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:03:44.625][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:03:44.625][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:44.626][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:44.627][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:03:44.627][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:03:44.628][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:44.629][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:44.630][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-09-07 16:03:44.631][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-09-07 16:03:44.631][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:44.632][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:44.633][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-09-07 16:03:44.633][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-09-07 16:03:44.634][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:44.635][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:44.635][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:44.636][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:44.637][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:44.638][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:44.638][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:44.639][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:44.640][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:44.641][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:44.642][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:44.642][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:44.643][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:44.644][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:44.644][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:44.645][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:44.646][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:44.647][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:44.647][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:03:44.648][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:03:44.649][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:44.650][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:44.650][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:03:44.651][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:03:44.652][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:44.653][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:44.653][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:44.654][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:44.655][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:44.656][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:44.656][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:44.657][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:44.658][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:44.659][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:44.659][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:44.660][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:44.661][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:44.662][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:44.662][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:44.663][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:44.664][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:44.664][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:44.665][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:44.666][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:44.667][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:44.667][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:44.668][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:44.669][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:44.669][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:44.670][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:44.671][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-09-07 16:03:44.671][private$selectFields]
biodb.TRACE[2024-09-07 16:03:44.672][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-09-07 16:03:44.673][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-09-07 16:03:44.674][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-09-07 16:03:44.674][ef$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:44.675][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:44.676][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:44.676][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:44.677][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:44.678][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:44.678][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:44.679][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:44.680][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:44.681][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:44.681][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:44.682][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:44.683][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:44.684][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:44.684][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:44.685][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:44.686][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:44.687][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:44.687][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:44.688][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:44.689][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:44.689][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:44.690][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:44.691][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:44.692][ef$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:03:44.692][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:03:44.693][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:44.694][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:44.695][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:03:44.695][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:03:44.696][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:44.697][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:44.697][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:03:44.698][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:03:44.699][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:44.705][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:44.706][ef$get] Asked field names are: logp.
biodb.TRACE[2024-09-07 16:03:44.707][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-09-07 16:03:44.708][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:44.709][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:44.710][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:44.711][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:44.711][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:44.712][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:44.713][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:44.713][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:44.714][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:44.715][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:44.716][ef$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:03:44.716][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:03:44.717][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:44.718][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:44.718][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:44.719][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:44.720][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:44.720][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:44.721][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:44.722][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:44.723][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:44.723][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:44.724][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:44.725][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:44.725][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:44.726][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:44.727][ef$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:44.728][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:44.728][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:44.729][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:44.730][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:44.730][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:44.731][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:44.732][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:44.733][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:44.733][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:44.734][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:44.735][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:44.735][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:44.736][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:44.737][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:44.737][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:44.738][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:44.739][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:44.740][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:44.741][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:44.741][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:44.742][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:44.743][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:44.743][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:44.744][ef$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:03:44.745][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:03:44.745][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:44.746][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:44.747][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:03:44.748][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:03:44.748][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:44.749][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:44.750][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:03:44.750][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:03:44.751][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:44.752][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:44.752][ef$get] Asked field names are: logp.
biodb.TRACE[2024-09-07 16:03:44.753][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-09-07 16:03:44.754][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:44.755][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:44.755][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:44.756][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:44.757][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:44.758][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:44.758][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:44.759][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:44.760][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:44.760][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:44.761][ef$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:03:44.762][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:03:44.762][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:44.763][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:44.764][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:44.765][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:44.765][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:44.766][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:44.767][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:44.768][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:44.768][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:44.769][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:44.770][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:44.771][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:44.771][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:44.772][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:44.773][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-09-07 16:03:44.773][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-09-07 16:03:44.774][ef$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:44.775][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:44.775][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:44.776][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:44.777][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:44.778][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:44.778][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:44.779][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:44.780][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:44.780][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:44.781][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:44.782][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:44.782][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:44.783][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:44.784][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:44.785][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:44.785][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:44.786][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:44.787][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:44.787][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:44.788][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:44.789][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:44.789][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:44.790][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:44.791][ef$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:03:44.792][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:03:44.792][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:44.793][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:44.794][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:03:44.794][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:03:44.795][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:44.796][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:44.797][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:03:44.797][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:03:44.798][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:44.799][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:44.800][ef$get] Asked field names are: logp.
biodb.TRACE[2024-09-07 16:03:44.800][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-09-07 16:03:44.801][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:44.802][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:44.802][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:44.803][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:44.804][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:44.805][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:44.805][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:44.806][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:44.807][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:44.808][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:44.808][ef$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:03:44.809][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:03:44.810][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:44.810][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:44.811][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:44.812][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:44.813][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:44.813][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:44.814][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:44.815][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:44.815][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:44.816][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:44.817][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:44.817][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:44.818][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:44.819][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:44.820][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2024-09-07 16:03:44.820][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:44.821][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:44.822][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:44.822][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:44.823][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:44.824][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:44.825][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:44.825][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:44.826][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:44.827][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:44.827][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:44.828][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:44.829][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:44.830][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:44.830][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:44.831][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:44.832][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:44.832][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:44.833][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:44.834][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:44.834][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:44.835][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:44.836][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:44.837][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:44.837][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:44.838][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:44.839][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:44.840][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:44.840][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:44.841][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:44.842][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:44.842][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:44.843][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:44.844][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:44.844][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:44.845][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:44.846][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:44.847][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:44.847][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:44.848][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:44.849][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:44.850][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:44.850][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:44.851][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:44.852][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:44.852][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:44.853][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:44.854][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:44.855][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:44.855][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:44.856][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:44.857][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:44.857][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:44.858][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:44.859][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:44.859][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:44.860][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:44.861][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:44.862][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:44.862][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:44.863][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:44.864][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:44.864][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:44.865][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:44.866][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:44.867][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:44.867][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:44.868][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:44.869][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:44.869][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:44.870][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:44.871][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:44.872][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:03:44.872][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:03:44.873][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:44.874][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:44.874][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:03:44.875][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:03:44.876][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:44.876][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:44.877][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:03:44.878][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:03:44.879][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:44.879][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:44.880][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:03:44.881][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:03:44.882][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:44.882][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:44.883][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:03:44.884][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:03:44.884][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:44.885][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:44.886][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:03:44.886][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:03:44.887][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:44.888][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:44.889][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:03:44.889][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:03:44.890][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:44.891][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:44.891][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:03:44.892][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:03:44.893][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:44.894][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:44.894][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:03:44.895][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:03:44.896][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:44.896][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:44.897][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-09-07 16:03:44.898][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-09-07 16:03:44.899][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:44.899][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:44.900][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-09-07 16:03:44.901][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-09-07 16:03:44.901][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:44.902][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:44.903][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-09-07 16:03:44.904][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-09-07 16:03:44.904][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:44.905][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:44.906][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:44.907][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:44.907][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:44.908][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:44.909][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:44.909][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:44.910][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:44.911][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:44.911][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:44.912][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:44.913][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:44.914][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:44.914][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:44.915][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:44.916][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:44.916][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:44.917][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:44.918][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:44.919][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:44.919][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:44.920][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:44.921][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:44.921][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:44.922][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:44.923][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:03:44.924][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:03:44.924][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:44.925][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:44.926][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:03:44.927][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:03:44.927][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:44.928][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:44.929][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:03:44.929][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:03:44.930][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:44.931][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:44.932][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:44.932][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:44.933][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:44.934][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:44.934][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:44.935][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:44.936][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:44.937][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:44.946][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:44.947][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:44.948][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:44.949][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:44.950][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:44.951][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:44.951][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:44.952][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:44.953][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:44.954][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:44.954][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:44.955][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:44.956][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:44.957][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:44.957][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:44.958][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:44.959][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:44.960][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:44.960][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:44.961][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:44.962][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:44.962][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:44.963][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:44.964][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:44.964][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:44.965][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:44.966][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:44.967][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:44.973][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [171920436, 5-[2-(3-hydroxyphenyl)ethynyl]benzene-1,3-diol, 5-[2-(3-hydroxyphenyl)ethynyl]benzene-1,3-diol, 5-[2-(3-hydroxyphenyl)ethynyl]benzene-1,3-diol, 5-[2-(3-hydroxyphenyl)ethynyl]benzene-1,3-diol, ...].
biodb.DEBUG[2024-09-07 16:03:44.974][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:03:44.975][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:03:44.975][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:03:44.980][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:03:44.981][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:03:44.981][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:03:44.982][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:03:44.983][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:44.983][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:44.984][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:44.985][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:44.986][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:44.986][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:44.987][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:44.988][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:44.989][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:44.989][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:44.990][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:44.991][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:44.991][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:44.992][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:44.993][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:44.993][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:44.994][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:44.995][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:44.996][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:44.996][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:44.997][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:44.998][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:44.999][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:44.999][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:45.000][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:45.001][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:45.001][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:45.002][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:45.003][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:45.003][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:45.004][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:45.005][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:45.005][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:45.006][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:45.007][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:45.008][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:45.008][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:45.009][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:45.010][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:45.010][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:45.011][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:45.012][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:45.012][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:45.013][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:45.014][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:45.015][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:45.015][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:45.016][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:45.017][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:03:45.017][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:03:45.018][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:45.019][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:45.019][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:03:45.020][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:03:45.021][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:45.022][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:45.022][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:03:45.023][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:03:45.024][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:45.024][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:45.025][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:03:45.026][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:03:45.027][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:45.027][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:45.028][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:03:45.029][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:03:45.029][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:45.030][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:45.031][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:03:45.032][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:03:45.032][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:45.033][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:45.034][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-09-07 16:03:45.034][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-09-07 16:03:45.035][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:45.036][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:45.036][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-09-07 16:03:45.037][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-09-07 16:03:45.038][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:45.039][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:45.040][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:45.041][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:45.041][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:45.042][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:45.043][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:45.043][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:45.044][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:45.045][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:45.045][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:45.046][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:45.047][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:45.048][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:45.048][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:45.049][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:45.050][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:45.050][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:45.051][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:03:45.052][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:03:45.053][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:45.053][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:45.054][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:03:45.055][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:03:45.055][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:45.056][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:45.057][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:45.058][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:45.058][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:45.059][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:45.060][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:45.060][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:45.061][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:45.062][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:45.063][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:45.063][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:45.064][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:45.065][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:45.065][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:45.066][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:45.067][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:45.067][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:45.068][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:45.069][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:45.070][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:45.070][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:45.071][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:45.072][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:45.072][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:45.073][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:45.074][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-09-07 16:03:45.074][private$selectFields]
biodb.TRACE[2024-09-07 16:03:45.075][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-09-07 16:03:45.076][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-09-07 16:03:45.076][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-09-07 16:03:45.077][ef$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:45.078][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:45.079][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:45.079][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:45.080][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:45.081][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:45.081][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:45.082][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:45.083][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:45.083][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:45.084][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:45.085][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:45.086][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:45.086][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:45.087][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:45.088][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:45.089][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:45.089][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:45.090][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:45.091][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:45.091][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:45.092][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:45.093][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:45.093][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:45.094][ef$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:03:45.095][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:03:45.096][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:45.096][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:45.097][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:03:45.098][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:03:45.098][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:45.099][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:45.100][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:03:45.101][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:03:45.101][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:45.102][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:45.103][ef$get] Asked field names are: logp.
biodb.TRACE[2024-09-07 16:03:45.103][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-09-07 16:03:45.104][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:45.105][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:45.105][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:45.106][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:45.107][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:45.107][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:45.108][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:45.109][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:45.109][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:45.110][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:45.111][ef$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:03:45.112][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:03:45.112][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:45.113][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:45.114][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:45.114][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:45.115][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:45.116][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:45.116][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:45.117][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:45.118][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:45.118][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:45.119][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:45.120][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:45.121][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:45.121][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:45.122][ef$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:45.123][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:45.123][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:45.124][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:45.125][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:45.125][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:45.126][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:45.127][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:45.127][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:45.128][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:45.129][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:45.130][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:45.130][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:45.131][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:45.132][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:45.132][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:45.133][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:45.134][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:45.135][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:45.136][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:45.136][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:45.137][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:45.138][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:45.138][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:45.139][ef$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:03:45.140][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:03:45.140][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:45.141][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:45.142][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:03:45.143][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:03:45.144][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:45.144][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:45.145][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:03:45.146][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:03:45.147][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:45.147][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:45.148][ef$get] Asked field names are: logp.
biodb.TRACE[2024-09-07 16:03:45.149][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-09-07 16:03:45.150][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:45.150][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:45.151][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:45.152][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:45.152][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:45.153][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:45.154][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:45.155][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:45.155][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:45.156][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:45.157][ef$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:03:45.157][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:03:45.158][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:45.159][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:45.159][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:45.160][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:45.161][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:45.161][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:45.162][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:45.163][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:45.164][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:45.164][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:45.165][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:45.166][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:45.166][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:45.167][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:45.168][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-09-07 16:03:45.168][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-09-07 16:03:45.169][ef$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:45.170][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:45.171][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:45.171][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:45.172][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:45.173][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:45.173][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:45.174][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:45.175][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:45.176][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:45.176][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:45.177][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:45.178][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:45.178][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:45.184][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:45.185][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:45.186][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:45.187][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:45.188][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:45.189][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:45.190][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:45.191][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:45.192][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:45.192][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:45.193][ef$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:03:45.194][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:03:45.195][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:45.195][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:45.196][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:03:45.197][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:03:45.197][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:45.198][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:45.199][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:03:45.200][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:03:45.200][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:45.201][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:45.202][ef$get] Asked field names are: logp.
biodb.TRACE[2024-09-07 16:03:45.202][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-09-07 16:03:45.203][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:45.204][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:45.204][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:45.205][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:45.206][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:45.207][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:45.207][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:45.208][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:45.209][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:45.209][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:45.210][ef$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:03:45.211][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:03:45.212][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:45.212][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:45.213][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:45.214][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:45.214][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:45.215][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:45.216][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:45.217][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:45.217][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:45.218][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:45.219][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:45.219][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:45.220][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:45.221][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:45.221][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2024-09-07 16:03:45.222][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:45.223][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:45.224][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:45.224][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:45.225][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:45.226][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:45.227][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:45.227][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:45.228][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:45.229][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:45.229][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:45.230][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:45.231][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:45.232][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:45.233][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:45.233][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:45.234][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:45.235][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:45.236][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:45.236][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:45.237][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:45.238][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:45.238][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:45.239][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:45.240][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:45.241][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:45.241][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:45.242][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:45.243][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:45.244][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:45.244][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:45.245][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:45.246][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:45.246][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:45.247][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:45.248][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:45.249][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:45.249][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:45.250][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:45.251][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:45.251][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:45.252][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:45.253][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:45.254][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:45.254][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:45.255][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:45.256][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:45.256][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:45.257][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:45.258][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:45.259][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:45.259][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:45.260][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:45.261][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:45.262][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:45.262][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:45.263][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:45.264][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:45.264][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:45.265][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:45.266][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:45.267][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:45.267][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:45.268][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:45.269][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:45.269][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:45.270][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:45.271][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:45.272][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:45.273][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:45.273][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:45.274][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:45.275][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:03:45.276][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:03:45.276][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:45.277][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:45.278][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:03:45.279][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:03:45.279][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:45.280][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:45.281][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:03:45.282][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:03:45.282][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:45.283][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:45.284][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:03:45.285][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:03:45.285][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:45.286][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:45.287][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:03:45.287][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:03:45.288][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:45.289][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:45.290][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:03:45.290][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:03:45.291][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:45.292][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:45.293][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:03:45.293][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:03:45.294][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:45.295][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:45.295][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:03:45.296][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:03:45.297][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:45.298][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:45.298][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:03:45.299][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:03:45.300][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:45.300][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:45.301][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-09-07 16:03:45.302][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-09-07 16:03:45.303][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:45.303][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:45.304][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-09-07 16:03:45.305][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-09-07 16:03:45.306][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:45.306][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:45.307][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-09-07 16:03:45.308][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-09-07 16:03:45.309][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:45.309][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:45.310][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:45.311][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:45.311][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:45.312][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:45.313][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:45.314][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:45.314][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:45.315][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:45.316][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:45.316][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:45.317][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:45.318][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:45.319][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:45.319][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:45.320][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:45.321][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:45.321][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:45.322][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:45.323][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:45.324][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:45.324][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:45.325][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:45.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:45.326][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:45.327][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:03:45.328][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:03:45.329][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:45.329][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:45.330][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:03:45.331][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:03:45.332][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:45.332][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:45.333][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:03:45.334][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:03:45.334][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:45.335][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:45.336][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:45.337][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:45.337][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:45.338][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:45.339][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:45.340][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:45.340][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:45.341][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:45.342][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:45.342][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:45.343][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:45.344][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:45.345][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:45.345][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:45.346][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:45.347][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:45.347][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:45.348][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:45.349][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:45.350][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:45.350][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:45.351][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:45.352][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:45.352][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:45.353][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:45.354][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:45.355][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:45.355][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:45.356][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:45.357][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:45.358][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:45.358][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:45.359][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:45.360][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:45.360][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:45.361][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:45.367][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [171900686, 4-(2-chloro-6-methyl-3-pyridyl)-3,4-dihydroxy-butanenitrile, 4-(2-chloro-6-methyl-3-pyridinyl)-3,4-dihydroxybutanenitrile, 4-(2-chloro-6-methylpyridin-3-yl)-3,4-dihydroxybutanenitrile, 4-(2-chloranyl-6-methyl-pyridin-3-yl)-3,4-bis(oxidanyl)butanenitrile, ...].
biodb.DEBUG[2024-09-07 16:03:45.368][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:03:45.369][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:03:45.369][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:03:45.374][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:03:45.374][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:03:45.375][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:03:45.376][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:03:45.377][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:45.378][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:45.378][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:45.379][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:45.380][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:45.380][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:45.381][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:45.382][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:45.383][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:45.383][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:45.384][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:45.385][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:45.385][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:45.386][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:45.387][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:45.388][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:45.389][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:45.389][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:45.390][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:45.391][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:45.391][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:45.392][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:45.393][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:45.393][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:45.394][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:45.395][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:45.396][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:45.397][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:45.397][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:45.398][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:45.399][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:45.400][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:45.400][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:45.401][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:45.402][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:45.402][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:45.403][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:45.404][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:45.405][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:45.405][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:45.406][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:45.407][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:45.407][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:45.408][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:45.409][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:45.410][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:45.410][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:45.411][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:45.412][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:03:45.413][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:03:45.413][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:45.414][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:45.415][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:03:45.416][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:03:45.416][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:45.417][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:45.418][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:03:45.418][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:03:45.419][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:45.420][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:45.426][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:03:45.427][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:03:45.428][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:45.429][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:45.430][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:03:45.431][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:03:45.432][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:45.432][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:45.433][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:03:45.434][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:03:45.434][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:45.435][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:45.436][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-09-07 16:03:45.437][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-09-07 16:03:45.437][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:45.438][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:45.439][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-09-07 16:03:45.439][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-09-07 16:03:45.440][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:45.441][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:45.442][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:45.442][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:45.443][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:45.444][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:45.444][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:45.445][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:45.446][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:45.447][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:45.447][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:45.448][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:45.449][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:45.449][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:45.450][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:45.451][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:45.452][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:45.452][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:45.453][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:03:45.454][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:03:45.455][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:45.455][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:45.456][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:03:45.457][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:03:45.457][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:45.458][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:45.459][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:45.460][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:45.460][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:45.461][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:45.462][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:45.463][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:45.463][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:45.464][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:45.465][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:45.465][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:45.466][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:45.467][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:45.467][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:45.468][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:45.469][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:45.470][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:45.470][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:45.471][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:45.472][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:45.472][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:45.473][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:45.474][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:45.475][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:45.475][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:45.476][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-09-07 16:03:45.477][private$selectFields]
biodb.TRACE[2024-09-07 16:03:45.477][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-09-07 16:03:45.478][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-09-07 16:03:45.479][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-09-07 16:03:45.479][ef$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:45.480][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:45.481][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:45.482][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:45.482][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:45.483][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:45.484][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:45.484][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:45.485][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:45.486][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:45.487][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:45.487][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:45.488][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:45.489][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:45.490][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:45.490][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:45.491][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:45.492][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:45.493][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:45.494][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:45.494][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:45.495][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:45.496][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:45.496][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:45.497][ef$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:03:45.498][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:03:45.498][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:45.499][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:45.500][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:03:45.501][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:03:45.501][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:45.502][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:45.503][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:03:45.503][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:03:45.504][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:45.505][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:45.506][ef$get] Asked field names are: logp.
biodb.TRACE[2024-09-07 16:03:45.506][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-09-07 16:03:45.507][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:45.508][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:45.508][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:45.509][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:45.510][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:45.511][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:45.511][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:45.512][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:45.513][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:45.514][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:45.514][ef$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:03:45.515][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:03:45.516][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:45.516][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:45.517][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:45.518][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:45.519][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:45.519][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:45.520][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:45.521][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:45.521][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:45.522][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:45.523][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:45.524][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:45.525][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:45.525][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:45.526][ef$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:45.527][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:45.527][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:45.528][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:45.529][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:45.530][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:45.530][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:45.531][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:45.532][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:45.532][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:45.533][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:45.534][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:45.535][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:45.535][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:45.536][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:45.537][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:45.537][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:45.538][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:45.539][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:45.540][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:45.540][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:45.541][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:45.542][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:45.543][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:45.543][ef$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:03:45.544][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:03:45.545][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:45.546][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:45.546][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:03:45.547][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:03:45.548][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:45.548][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:45.549][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:03:45.550][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:03:45.551][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:45.552][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:45.552][ef$get] Asked field names are: logp.
biodb.TRACE[2024-09-07 16:03:45.553][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-09-07 16:03:45.554][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:45.555][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:45.555][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:45.556][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:45.557][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:45.557][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:45.558][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:45.559][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:45.560][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:45.560][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:45.561][ef$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:03:45.562][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:03:45.563][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:45.563][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:45.564][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:45.565][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:45.566][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:45.566][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:45.567][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:45.568][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:45.568][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:45.569][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:45.570][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:45.571][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:45.571][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:45.572][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:45.573][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-09-07 16:03:45.573][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-09-07 16:03:45.574][ef$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:45.575][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:45.576][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:45.576][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:45.577][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:45.578][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:45.579][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:45.579][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:45.580][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:45.581][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:45.582][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:45.582][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:45.583][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:45.584][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:45.584][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:45.585][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:45.586][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:45.586][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:45.587][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:45.588][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:45.588][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:45.589][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:45.590][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:45.591][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:45.591][ef$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:03:45.592][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:03:45.593][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:45.594][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:45.594][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:03:45.595][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:03:45.596][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:45.596][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:45.597][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:03:45.598][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:03:45.599][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:45.599][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:45.600][ef$get] Asked field names are: logp.
biodb.TRACE[2024-09-07 16:03:45.601][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-09-07 16:03:45.601][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:45.602][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:45.603][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:45.604][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:45.604][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:45.605][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:45.606][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:45.606][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:45.607][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:45.608][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:45.608][ef$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:03:45.609][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:03:45.610][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:45.610][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:45.611][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:45.612][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:45.613][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:45.613][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:45.614][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:45.615][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:45.615][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:45.616][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:45.617][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:45.618][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:45.618][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:45.619][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:45.620][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2024-09-07 16:03:45.620][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:45.621][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:45.622][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:45.623][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:45.623][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:45.624][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:45.625][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:45.626][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:45.626][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:45.627][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:45.628][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:45.629][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:45.629][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:45.630][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:45.631][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:45.631][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:45.632][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:45.633][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:45.634][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:45.634][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:45.635][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:45.636][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:45.637][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:45.637][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:45.638][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:45.639][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:45.640][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:45.640][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:45.641][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:45.642][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:45.643][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:45.643][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:45.644][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:45.645][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:45.645][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:45.646][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:45.647][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:45.648][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:45.648][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:45.649][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:45.650][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:45.651][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:45.651][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:45.652][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:45.653][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:45.653][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:45.654][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:45.655][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:45.656][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:45.656][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:45.657][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:45.658][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:45.658][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:45.659][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:45.660][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:45.661][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:45.661][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:45.662][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:45.663][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:45.669][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:45.670][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:45.671][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:45.672][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:45.673][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:45.674][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:45.675][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:45.676][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:45.676][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:45.677][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:45.678][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:45.679][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:45.679][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:45.680][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:03:45.681][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:03:45.682][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:45.682][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:45.683][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:03:45.684][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:03:45.684][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:45.685][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:45.686][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:03:45.687][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:03:45.687][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:45.688][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:45.689][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:03:45.690][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:03:45.690][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:45.691][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:45.692][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:03:45.693][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:03:45.693][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:45.694][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:45.695][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:03:45.696][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:03:45.697][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:45.697][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:45.698][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:03:45.699][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:03:45.700][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:45.700][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:45.701][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:03:45.702][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:03:45.703][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:45.703][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:45.704][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:03:45.705][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:03:45.706][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:45.706][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:45.707][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-09-07 16:03:45.708][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-09-07 16:03:45.708][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:45.709][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:45.710][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-09-07 16:03:45.711][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-09-07 16:03:45.711][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:45.712][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:45.713][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-09-07 16:03:45.713][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-09-07 16:03:45.714][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:45.715][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:45.716][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:45.716][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:45.717][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:45.718][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:45.718][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:45.719][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:45.720][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:45.721][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:45.721][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:45.722][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:45.723][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:45.723][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:45.724][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:45.725][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:45.726][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:45.726][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:45.727][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:45.728][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:45.729][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:45.729][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:45.730][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:45.731][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:45.731][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:45.732][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:45.733][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:03:45.734][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:03:45.734][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:45.735][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:45.736][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:03:45.736][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:03:45.737][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:45.738][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:45.739][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:03:45.739][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:03:45.740][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:45.741][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:45.741][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:45.742][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:45.743][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:45.744][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:45.744][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:45.745][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:45.746][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:45.747][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:45.747][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:45.748][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:45.749][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:45.749][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:45.750][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:45.751][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:45.752][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:45.752][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:45.753][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:45.754][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:45.755][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:45.755][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:45.756][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:45.757][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:45.758][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:45.758][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:45.759][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:45.760][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:45.761][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:45.761][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:45.762][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:45.763][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:45.764][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:45.764][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:45.765][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:45.766][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:45.767][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:45.767][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:45.774][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [171900685, 4-(2-chloro-5-methyl-3-pyridyl)-3,4-dihydroxy-butanenitrile, 4-(2-chloro-5-methyl-3-pyridinyl)-3,4-dihydroxybutanenitrile, 4-(2-chloro-5-methylpyridin-3-yl)-3,4-dihydroxybutanenitrile, 4-(2-chloranyl-5-methyl-pyridin-3-yl)-3,4-bis(oxidanyl)butanenitrile, ...].
biodb.DEBUG[2024-09-07 16:03:45.774][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-09-07 16:03:45.775][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-09-07 16:03:45.782][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:03:45.782][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:03:45.783][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:03:45.787][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:03:45.787][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:03:45.788][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:03:45.789][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:03:45.794][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.11358306:204.13358306[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2024-09-07 16:03:45.796][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-09-07 16:03:45.797][cch$loadFileContent] Trying to load 1 files from cache: [1]: "1279ae7853bbae0b1c59971aee79ce72".
biodb.TRACE[2024-09-07 16:03:45.798][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-09-07 16:03:45.799][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/1279ae7853bbae0b1c59971aee79ce72.content".
biodb.DEBUG[2024-09-07 16:03:45.800][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-09-07 16:03:45.801][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:03:45.802][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:03:45.802][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:03:45.807][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:03:45.807][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:03:45.808][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:03:45.808][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:03:45.809][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:45.810][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:45.811][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:45.812][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:45.812][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:45.813][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:45.814][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:45.815][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:45.815][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:45.816][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:45.817][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:45.817][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:45.818][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:45.819][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:45.820][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:45.820][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:45.821][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:45.822][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:45.822][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:45.823][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:45.824][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:45.824][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:45.825][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:45.826][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:45.827][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:45.827][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:45.828][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:45.829][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:45.829][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:45.830][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:45.831][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:45.831][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:45.832][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:45.833][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:45.834][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:45.834][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:45.835][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:45.836][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:45.836][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:45.837][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:45.838][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:45.839][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:45.839][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:45.840][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:45.841][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:45.841][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:45.842][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:45.843][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:45.843][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:03:45.844][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:03:45.845][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:45.846][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:45.846][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:03:45.847][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:03:45.848][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:45.848][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:45.849][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:03:45.850][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:03:45.851][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:45.851][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:45.852][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:03:45.853][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:03:45.854][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:45.854][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:45.855][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:03:45.856][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:03:45.857][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:45.857][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:45.858][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:03:45.859][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:03:45.859][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:45.860][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:45.861][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-09-07 16:03:45.862][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-09-07 16:03:45.862][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:45.863][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:45.864][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-09-07 16:03:45.865][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-09-07 16:03:45.865][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:45.866][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:45.867][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:45.868][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:45.868][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:45.869][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:45.870][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:45.871][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:45.871][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:45.872][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:45.873][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:45.874][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:45.874][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:45.875][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:45.876][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:45.877][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:45.877][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:45.878][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:45.879][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:03:45.879][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:03:45.880][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:45.881][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:45.881][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:03:45.882][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:03:45.883][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:45.884][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:45.885][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:45.885][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:45.886][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:45.887][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:45.887][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:45.888][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:45.889][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:45.890][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:45.890][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:45.891][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:45.892][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:45.893][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:45.893][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:45.894][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:45.895][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:45.895][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:45.896][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:45.897][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:45.898][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:45.898][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:45.899][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:45.900][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:45.901][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:45.901][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:45.902][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-09-07 16:03:45.903][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-09-07 16:03:45.904][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:45.904][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:45.905][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-09-07 16:03:45.906][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-09-07 16:03:45.912][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:45.913][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:45.914][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-09-07 16:03:45.915][private$selectFields]
biodb.TRACE[2024-09-07 16:03:45.916][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-09-07 16:03:45.916][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-09-07 16:03:45.917][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-09-07 16:03:45.918][ef$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:45.919][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:45.920][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:45.920][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:45.921][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:45.922][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:45.922][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:45.923][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:45.924][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:45.925][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:45.925][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:45.926][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:45.927][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:45.927][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:45.928][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:45.929][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:45.929][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:45.930][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:45.931][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:45.932][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:45.932][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:45.933][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:45.934][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:45.934][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:45.935][ef$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:03:45.936][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:03:45.937][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:45.937][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:45.938][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:03:45.939][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:03:45.939][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:45.940][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:45.941][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:03:45.942][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:03:45.942][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:45.943][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:45.944][ef$get] Asked field names are: logp.
biodb.TRACE[2024-09-07 16:03:45.944][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-09-07 16:03:45.945][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:45.946][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:45.947][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:45.947][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:45.948][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:45.949][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:45.950][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:45.950][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:45.951][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:45.952][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:45.952][ef$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:03:45.953][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:03:45.954][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:45.954][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:45.955][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:45.956][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:45.956][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:45.957][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:45.958][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:45.959][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:45.959][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:45.960][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:45.961][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:45.961][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:45.962][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:45.963][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:45.963][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-09-07 16:03:45.964][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-09-07 16:03:45.965][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:45.966][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:45.966][ef$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:45.967][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:45.968][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:45.968][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:45.969][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:45.970][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:45.970][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:45.971][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:45.972][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:45.973][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:45.973][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:45.974][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:45.975][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:45.975][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:45.976][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:45.977][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:45.977][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:45.978][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:45.979][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:45.980][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:45.980][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:45.981][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:45.982][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:45.982][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:45.983][ef$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:03:45.984][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:03:45.984][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:45.985][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:45.986][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:03:45.987][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:03:45.987][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:45.988][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:45.989][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:03:45.989][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:03:45.990][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:45.991][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:45.991][ef$get] Asked field names are: logp.
biodb.TRACE[2024-09-07 16:03:45.992][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-09-07 16:03:45.993][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:45.994][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:45.994][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:45.995][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:45.996][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:45.996][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:45.997][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:45.998][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:45.999][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:45.999][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:46.000][ef$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:03:46.001][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:03:46.001][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:46.002][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:46.003][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:46.003][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:46.004][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:46.005][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:46.006][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:46.006][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:46.007][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:46.008][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:46.008][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:46.009][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:46.010][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:46.010][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:46.011][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-09-07 16:03:46.012][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-09-07 16:03:46.013][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:46.013][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:46.014][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-09-07 16:03:46.015][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-09-07 16:03:46.015][ef$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:46.016][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:46.017][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:46.018][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:46.018][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:46.019][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:46.020][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:46.020][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:46.021][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:46.022][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:46.022][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:46.023][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:46.024][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:46.025][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:46.025][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:46.026][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:46.027][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:46.027][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:46.028][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:46.029][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:46.029][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:46.030][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:46.031][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:46.032][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:46.032][ef$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:03:46.033][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:03:46.034][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:46.034][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:46.035][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:03:46.036][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:03:46.036][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:46.037][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:46.038][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:03:46.038][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:03:46.039][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:46.040][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:46.041][ef$get] Asked field names are: logp.
biodb.TRACE[2024-09-07 16:03:46.041][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-09-07 16:03:46.042][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:46.043][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:46.043][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:46.044][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:46.045][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:46.046][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:46.047][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:46.047][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:46.048][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:46.049][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:46.049][ef$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:03:46.050][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:03:46.051][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:46.051][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:46.052][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:46.053][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:46.053][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:46.054][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:46.055][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:46.056][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:46.056][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:46.057][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:46.058][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:46.058][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:46.059][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:46.060][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:46.060][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2024-09-07 16:03:46.061][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:46.062][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:46.063][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:46.063][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:46.064][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:46.065][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:46.065][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:46.066][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:46.067][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:46.068][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:46.068][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:46.069][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:46.070][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:46.070][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:46.071][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:46.072][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:46.073][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:46.073][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:46.074][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:46.075][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:46.075][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:46.076][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:46.077][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:46.077][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:46.078][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:46.079][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:46.080][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:46.080][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:46.081][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:46.082][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:46.083][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:46.083][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:46.084][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:46.085][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:46.085][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:46.086][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:46.087][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:46.088][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:46.088][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:46.089][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:46.090][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:46.090][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:46.091][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:46.092][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:46.093][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:46.093][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:46.094][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:46.095][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:46.095][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:46.096][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:46.097][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:46.098][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:46.098][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:46.099][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:46.100][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:46.100][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:46.101][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:46.102][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:46.103][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:46.103][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:46.104][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:46.105][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:46.106][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:46.106][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:46.107][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:46.108][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:46.109][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:46.109][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:46.110][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:46.111][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:46.111][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:46.112][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:46.113][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:03:46.114][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:03:46.114][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:46.115][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:46.116][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:03:46.117][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:03:46.117][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:46.118][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:46.119][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:03:46.119][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:03:46.120][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:46.121][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:46.122][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:03:46.122][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:03:46.123][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:46.124][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:46.124][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:03:46.125][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:03:46.126][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:46.127][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:46.127][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:03:46.128][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:03:46.129][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:46.129][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:46.130][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:03:46.131][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:03:46.132][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:46.132][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:46.133][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:03:46.134][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:03:46.135][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:46.135][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:46.136][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:03:46.137][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:03:46.138][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:46.138][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:46.139][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-09-07 16:03:46.140][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-09-07 16:03:46.140][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:46.141][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:46.142][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-09-07 16:03:46.143][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-09-07 16:03:46.144][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:46.144][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:46.150][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-09-07 16:03:46.151][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-09-07 16:03:46.152][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:46.153][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:46.155][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:46.156][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:46.156][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:46.157][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:46.158][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:46.159][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:46.159][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:46.160][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:46.161][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:46.162][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:46.162][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:46.163][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:46.164][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:46.165][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:46.165][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:46.166][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:46.167][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:46.167][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:46.168][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:46.169][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:46.170][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:46.170][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:46.171][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:46.172][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:46.173][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:03:46.173][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:03:46.174][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:46.175][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:46.175][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:03:46.176][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:03:46.177][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:46.178][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:46.178][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:03:46.179][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:03:46.180][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:46.180][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:46.181][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:46.182][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:46.183][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:46.184][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:46.184][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:46.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:46.186][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:46.186][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:46.187][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:46.188][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:46.189][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:46.189][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:46.190][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:46.191][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:46.192][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:46.192][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:46.193][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:46.194][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:46.194][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:46.195][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:46.196][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:46.197][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:46.197][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:46.198][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:46.199][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:46.200][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:46.200][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:46.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:46.202][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:46.202][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:46.203][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:46.204][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:46.205][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:46.205][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:46.206][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:46.207][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:46.213][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [171853852, 3,3-dimethyl-6-phenyl-tetrahydropyran-2-one, 3,3-dimethyl-6-phenyl-2-oxanone, 3,3-dimethyl-6-phenyloxan-2-one, 3,3-dimethyl-6-phenyl-oxan-2-one, ...].
biodb.DEBUG[2024-09-07 16:03:46.214][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:03:46.214][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:03:46.215][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:03:46.219][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:03:46.220][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:03:46.221][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:03:46.221][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:03:46.222][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:46.223][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:46.224][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:46.224][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:46.225][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:46.226][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:46.227][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:46.227][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:46.228][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:46.229][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:46.230][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:46.230][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:46.231][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:46.232][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:46.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:46.233][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:46.234][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:46.235][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:46.235][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:46.236][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:46.237][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:46.238][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:46.238][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:46.239][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:46.240][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:46.240][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:46.241][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:46.242][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:46.243][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:46.243][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:46.244][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:46.245][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:46.245][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:46.246][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:46.247][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:46.248][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:46.248][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:46.249][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:46.250][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:46.250][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:46.251][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:46.252][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:46.253][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:46.253][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:46.254][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:46.255][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:46.255][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:46.256][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:46.257][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:03:46.258][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:03:46.258][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:46.259][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:46.260][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:03:46.260][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:03:46.261][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:46.262][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:46.263][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:03:46.263][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:03:46.264][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:46.265][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:46.265][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:03:46.266][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:03:46.267][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:46.268][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:46.269][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:03:46.269][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:03:46.270][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:46.271][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:46.272][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:03:46.272][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:03:46.273][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:46.274][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:46.274][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-09-07 16:03:46.275][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-09-07 16:03:46.276][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:46.276][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:46.277][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-09-07 16:03:46.278][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-09-07 16:03:46.279][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:46.279][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:46.280][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:46.281][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:46.281][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:46.282][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:46.283][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:46.284][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:46.284][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:46.285][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:46.286][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:46.286][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:46.287][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:46.288][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:46.288][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:46.289][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:46.290][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:46.291][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:46.291][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:03:46.292][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:03:46.293][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:46.293][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:46.294][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:03:46.295][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:03:46.296][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:46.296][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:46.297][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:46.298][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:46.298][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:46.299][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:46.300][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:46.301][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:46.301][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:46.302][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:46.303][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:46.303][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:46.304][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:46.305][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:46.305][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:46.306][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:46.307][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:46.308][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:46.308][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:46.309][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:46.310][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:46.310][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:46.311][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:46.312][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:46.313][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:46.313][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:46.314][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-09-07 16:03:46.315][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-09-07 16:03:46.315][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:46.316][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:46.317][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-09-07 16:03:46.317][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-09-07 16:03:46.318][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:46.319][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:46.320][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-09-07 16:03:46.320][private$selectFields]
biodb.TRACE[2024-09-07 16:03:46.321][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-09-07 16:03:46.322][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-09-07 16:03:46.322][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-09-07 16:03:46.323][ef$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:46.324][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:46.324][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:46.325][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:46.326][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:46.326][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:46.327][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:46.328][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:46.329][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:46.329][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:46.330][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:46.331][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:46.331][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:46.332][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:46.333][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:46.333][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:46.334][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:46.335][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:46.336][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:46.336][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:46.337][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:46.338][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:46.338][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:46.339][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:46.340][ef$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:03:46.340][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:03:46.341][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:46.342][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:46.342][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:03:46.343][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:03:46.344][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:46.345][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:46.345][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:03:46.346][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:03:46.347][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:46.348][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:46.349][ef$get] Asked field names are: logp.
biodb.TRACE[2024-09-07 16:03:46.349][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-09-07 16:03:46.350][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:46.351][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:46.351][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:46.352][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:46.353][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:46.354][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:46.354][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:46.355][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:46.356][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:46.356][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:46.357][ef$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:03:46.358][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:03:46.358][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:46.359][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:46.360][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:46.361][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:46.361][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:46.362][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:46.363][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:46.363][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:46.364][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:46.365][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:46.366][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:46.366][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:46.367][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:46.368][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:46.368][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-09-07 16:03:46.369][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-09-07 16:03:46.370][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:46.370][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:46.371][ef$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:46.372][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:46.373][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:46.373][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:46.374][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:46.375][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:46.375][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:46.376][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:46.377][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:46.378][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:46.378][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:46.379][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:46.380][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:46.380][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:46.381][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:46.382][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:46.382][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:46.383][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:46.389][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:46.390][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:46.391][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:46.392][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:46.393][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:46.394][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:46.395][ef$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:03:46.396][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:03:46.397][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:46.397][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:46.398][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:03:46.399][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:03:46.399][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:46.400][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:46.401][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:03:46.402][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:03:46.403][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:46.403][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:46.404][ef$get] Asked field names are: logp.
biodb.TRACE[2024-09-07 16:03:46.405][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-09-07 16:03:46.406][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:46.406][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:46.407][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:46.408][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:46.408][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:46.409][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:46.410][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:46.411][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:46.411][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:46.412][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:46.413][ef$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:03:46.413][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:03:46.414][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:46.415][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:46.416][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:46.416][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:46.417][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:46.418][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:46.418][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:46.419][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:46.420][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:46.421][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:46.421][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:46.422][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:46.423][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:46.424][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:46.424][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-09-07 16:03:46.425][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-09-07 16:03:46.426][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:46.426][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:46.427][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-09-07 16:03:46.428][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-09-07 16:03:46.429][ef$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:46.429][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:46.430][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:46.431][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:46.431][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:46.432][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:46.433][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:46.434][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:46.434][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:46.435][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:46.436][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:46.437][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:46.437][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:46.438][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:46.439][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:46.439][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:46.440][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:46.441][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:46.442][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:46.442][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:46.443][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:46.444][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:46.444][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:46.445][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:46.446][ef$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:03:46.447][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:03:46.447][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:46.448][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:46.449][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:03:46.450][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:03:46.450][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:46.451][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:46.452][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:03:46.452][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:03:46.455][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:46.456][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:46.456][ef$get] Asked field names are: logp.
biodb.TRACE[2024-09-07 16:03:46.457][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-09-07 16:03:46.458][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:46.459][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:46.459][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:46.460][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:46.461][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:46.461][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:46.462][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:46.463][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:46.464][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:46.464][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:46.465][ef$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:03:46.466][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:03:46.466][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:46.467][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:46.468][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:46.469][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:46.469][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:46.470][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:46.471][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:46.472][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:46.472][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:46.473][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:46.474][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:46.474][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:46.475][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:46.476][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:46.477][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2024-09-07 16:03:46.477][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:46.478][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:46.479][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:46.480][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:46.480][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:46.481][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:46.482][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:46.482][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:46.483][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:46.484][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:46.485][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:46.485][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:46.486][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:46.487][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:46.488][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:46.488][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:46.489][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:46.490][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:46.491][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:46.491][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:46.492][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:46.493][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:46.494][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:46.494][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:46.495][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:46.496][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:46.497][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:46.497][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:46.498][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:46.499][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:46.500][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:46.500][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:46.501][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:46.502][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:46.503][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:46.503][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:46.504][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:46.505][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:46.506][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:46.506][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:46.507][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:46.508][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:46.508][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:46.509][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:46.510][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:46.511][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:46.511][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:46.512][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:46.513][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:46.514][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:46.514][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:46.515][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:46.516][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:46.516][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:46.517][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:46.518][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:46.518][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:46.519][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:46.520][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:46.521][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:46.521][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:46.522][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:46.523][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:46.524][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:46.524][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:46.525][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:46.526][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:46.526][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:46.527][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:46.528][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:46.529][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:46.529][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:46.530][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:03:46.531][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:03:46.531][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:46.532][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:46.533][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:03:46.534][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:03:46.535][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:46.535][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:46.536][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:03:46.537][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:03:46.537][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:46.538][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:46.539][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:03:46.540][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:03:46.540][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:46.541][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:46.542][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:03:46.543][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:03:46.543][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:46.544][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:46.545][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:03:46.545][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:03:46.546][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:46.547][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:46.548][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:03:46.548][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:03:46.549][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:46.550][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:46.550][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:03:46.551][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:03:46.552][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:46.552][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:46.553][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:03:46.554][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:03:46.555][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:46.555][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:46.556][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-09-07 16:03:46.557][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-09-07 16:03:46.558][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:46.558][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:46.559][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-09-07 16:03:46.560][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-09-07 16:03:46.560][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:46.561][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:46.562][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-09-07 16:03:46.563][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-09-07 16:03:46.563][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:46.564][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:46.565][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:46.566][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:46.566][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:46.567][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:46.568][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:46.569][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:46.569][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:46.570][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:46.571][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:46.571][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:46.572][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:46.573][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:46.574][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:46.574][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:46.575][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:46.576][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:46.576][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:46.577][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:46.578][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:46.579][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:46.579][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:46.580][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:46.581][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:46.581][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:46.582][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:03:46.583][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:03:46.584][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:46.584][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:46.585][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:03:46.586][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:03:46.586][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:46.587][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:46.588][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:03:46.589][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:03:46.589][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:46.590][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:46.591][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:46.592][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:46.593][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:46.593][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:46.594][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:46.595][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:46.595][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:46.596][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:46.597][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:46.598][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:46.598][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:46.599][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:46.600][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:46.601][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:46.601][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:46.602][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:46.603][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:46.603][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:46.604][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:46.605][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:46.605][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:46.606][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:46.607][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:46.608][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:46.608][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:46.609][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:46.610][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:46.610][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:46.611][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:46.612][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:46.613][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:46.613][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:46.614][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:46.615][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:46.616][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:46.616][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:46.622][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [171846466, 1-methyl-3-(p-tolyl)hexahydropyrimidin-2-one, 1-methyl-3-(4-methylphenyl)-1,3-diazinan-2-one, 1-methyl-3-(4-methylphenyl)-1,3-diazinan-2-one, 1-methyl-3-(4-methylphenyl)-1,3-diazinan-2-one, ...].
biodb.DEBUG[2024-09-07 16:03:46.623][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:03:46.624][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:03:46.624][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:03:46.634][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:03:46.635][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:03:46.636][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:03:46.637][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:03:46.638][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:46.639][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:46.640][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:46.640][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:46.641][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:46.642][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:46.642][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:46.643][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:46.644][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:46.645][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:46.645][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:46.646][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:46.647][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:46.648][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:46.648][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:46.649][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:46.650][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:46.650][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:46.651][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:46.652][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:46.652][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:46.653][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:46.654][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:46.655][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:46.655][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:46.656][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:46.657][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:46.658][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:46.658][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:46.659][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:46.660][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:46.660][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:46.661][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:46.662][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:46.663][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:46.663][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:46.664][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:46.665][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:46.666][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:46.666][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:46.667][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:46.668][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:46.668][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:46.669][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:46.670][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:46.671][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:46.671][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:46.672][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:46.673][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:03:46.673][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:03:46.674][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:46.675][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:46.675][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:03:46.676][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:03:46.677][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:46.678][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:46.678][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:03:46.679][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:03:46.680][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:46.680][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:46.681][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:03:46.682][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:03:46.683][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:46.683][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:46.684][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:03:46.685][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:03:46.685][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:46.686][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:46.687][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:03:46.688][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:03:46.688][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:46.689][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:46.690][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-09-07 16:03:46.690][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-09-07 16:03:46.691][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:46.692][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:46.692][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-09-07 16:03:46.693][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-09-07 16:03:46.694][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:46.694][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:46.695][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:46.696][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:46.697][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:46.697][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:46.698][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:46.699][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:46.699][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:46.700][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:46.701][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:46.702][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:46.702][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:46.703][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:46.704][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:46.704][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:46.705][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:46.706][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:46.707][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:03:46.707][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:03:46.708][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:46.709][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:46.710][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:03:46.710][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:03:46.711][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:46.712][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:46.713][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:46.713][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:46.714][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:46.715][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:46.716][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:46.716][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:46.717][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:46.718][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:46.719][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:46.719][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:46.720][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:46.721][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:46.721][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:46.722][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:46.723][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:46.724][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:46.724][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:46.725][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:46.726][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:46.726][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:46.727][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:46.728][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:46.729][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:46.729][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:46.730][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-09-07 16:03:46.731][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-09-07 16:03:46.731][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:46.732][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:46.733][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-09-07 16:03:46.734][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-09-07 16:03:46.734][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:46.735][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:46.736][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-09-07 16:03:46.736][private$selectFields]
biodb.TRACE[2024-09-07 16:03:46.737][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-09-07 16:03:46.738][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-09-07 16:03:46.738][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-09-07 16:03:46.739][ef$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:46.740][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:46.741][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:46.741][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:46.742][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:46.743][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:46.743][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:46.744][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:46.745][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:46.746][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:46.746][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:46.747][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:46.748][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:46.748][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:46.749][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:46.750][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:46.751][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:46.752][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:46.752][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:46.753][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:46.754][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:46.754][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:46.755][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:46.756][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:46.756][ef$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:03:46.757][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:03:46.758][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:46.758][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:46.759][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:03:46.760][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:03:46.761][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:46.761][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:46.762][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:03:46.763][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:03:46.763][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:46.764][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:46.765][ef$get] Asked field names are: logp.
biodb.TRACE[2024-09-07 16:03:46.765][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-09-07 16:03:46.766][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:46.767][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:46.767][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:46.768][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:46.769][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:46.769][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:46.770][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:46.771][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:46.772][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:46.772][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:46.773][ef$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:03:46.774][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:03:46.774][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:46.775][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:46.776][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:46.777][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:46.777][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:46.778][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:46.779][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:46.780][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:46.780][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:46.781][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:46.782][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:46.782][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:46.783][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:46.784][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:46.785][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-09-07 16:03:46.785][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-09-07 16:03:46.786][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:46.787][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:46.787][ef$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:46.788][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:46.789][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:46.789][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:46.790][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:46.791][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:46.792][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:46.792][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:46.793][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:46.794][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:46.794][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:46.795][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:46.796][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:46.796][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:46.797][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:46.798][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:46.798][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:46.799][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:46.800][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:46.801][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:46.801][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:46.802][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:46.803][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:46.804][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:46.804][ef$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:03:46.805][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:03:46.806][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:46.806][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:46.807][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:03:46.808][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:03:46.809][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:46.809][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:46.810][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:03:46.811][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:03:46.811][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:46.812][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:46.813][ef$get] Asked field names are: logp.
biodb.TRACE[2024-09-07 16:03:46.813][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-09-07 16:03:46.814][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:46.815][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:46.815][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:46.816][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:46.817][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:46.818][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:46.818][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:46.819][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:46.820][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:46.820][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:46.821][ef$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:03:46.822][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:03:46.823][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:46.823][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:46.824][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:46.825][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:46.826][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:46.826][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:46.827][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:46.828][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:46.829][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:46.829][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:46.830][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:46.831][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:46.832][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:46.832][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:46.833][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-09-07 16:03:46.834][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-09-07 16:03:46.835][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:46.835][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:46.836][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-09-07 16:03:46.837][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-09-07 16:03:46.838][ef$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:46.838][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:46.839][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:46.840][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:46.840][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:46.841][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:46.842][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:46.842][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:46.843][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:46.844][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:46.845][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:46.845][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:46.846][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:46.847][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:46.847][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:46.848][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:46.849][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:46.849][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:46.850][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:46.851][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:46.851][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:46.852][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:46.853][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:46.853][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:46.854][ef$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:03:46.855][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:03:46.856][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:46.856][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:46.857][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:03:46.858][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:03:46.859][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:46.859][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:46.860][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:03:46.861][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:03:46.861][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:46.862][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:46.863][ef$get] Asked field names are: logp.
biodb.TRACE[2024-09-07 16:03:46.863][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-09-07 16:03:46.864][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:46.865][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:46.871][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:46.872][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:46.873][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:46.874][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:46.875][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:46.876][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:46.877][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:46.878][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:46.878][ef$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:03:46.879][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:03:46.880][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:46.880][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:46.881][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:46.882][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:46.882][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:46.883][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:46.884][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:46.884][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:46.885][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:46.886][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:46.886][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:46.887][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:46.888][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:46.889][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:46.889][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2024-09-07 16:03:46.890][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:46.891][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:46.892][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:46.892][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:46.893][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:46.894][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:46.894][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:46.895][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:46.896][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:46.897][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:46.897][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:46.898][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:46.899][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:46.900][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:46.901][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:46.901][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:46.902][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:46.903][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:46.903][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:46.904][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:46.905][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:46.906][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:46.906][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:46.907][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:46.908][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:46.909][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:46.909][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:46.910][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:46.911][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:46.911][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:46.912][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:46.913][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:46.914][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:46.914][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:46.915][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:46.916][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:46.917][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:46.917][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:46.918][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:46.919][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:46.920][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:46.920][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:46.921][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:46.922][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:46.922][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:46.923][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:46.924][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:46.924][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:46.925][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:46.926][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:46.927][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:46.927][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:46.928][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:46.929][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:46.930][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:46.930][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:46.931][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:46.932][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:46.932][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:46.933][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:46.934][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:46.935][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:46.935][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:46.936][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:46.937][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:46.937][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:46.938][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:46.939][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:46.939][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:46.940][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:46.941][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:46.942][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:46.942][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:03:46.943][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:03:46.944][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:46.944][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:46.945][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:03:46.946][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:03:46.947][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:46.947][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:46.948][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:03:46.949][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:03:46.949][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:46.950][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:46.951][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:03:46.952][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:03:46.952][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:46.953][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:46.954][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:03:46.955][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:03:46.955][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:46.956][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:46.957][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:03:46.957][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:03:46.958][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:46.959][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:46.960][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:03:46.960][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:03:46.961][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:46.962][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:46.962][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:03:46.963][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:03:46.964][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:46.964][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:46.965][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:03:46.966][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:03:46.967][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:46.967][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:46.968][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-09-07 16:03:46.969][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-09-07 16:03:46.970][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:46.970][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:46.971][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-09-07 16:03:46.972][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-09-07 16:03:46.972][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:46.973][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:46.974][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-09-07 16:03:46.974][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-09-07 16:03:46.975][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:46.976][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:46.977][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:46.977][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:46.978][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:46.979][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:46.979][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:46.980][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:46.981][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:46.982][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:46.982][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:46.983][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:46.984][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:46.984][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:46.985][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:46.986][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:46.987][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:46.988][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:46.988][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:46.989][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:46.990][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:46.990][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:46.991][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:46.992][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:46.992][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:46.993][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:46.994][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:03:46.995][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:03:46.995][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:46.996][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:46.997][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:03:46.997][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:03:46.998][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:46.999][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:47.000][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:03:47.000][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:03:47.001][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:47.002][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:47.002][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:47.003][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:47.004][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:47.005][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:47.005][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:47.006][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:47.007][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:47.007][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:47.008][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:47.009][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:47.009][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:47.010][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:47.011][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:47.012][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:47.012][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:47.013][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:47.014][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:47.014][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:47.015][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:47.016][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:47.016][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:47.017][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:47.018][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:47.019][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:47.019][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:47.020][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:47.021][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:47.021][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:47.022][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:47.023][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:47.024][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:47.024][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:47.025][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:47.026][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:47.026][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:47.027][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:47.033][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [171834268, N-[2-(6-methyl-5,6-dihydro-1H-indol-3-yl)ethyl]formamide, N-[2-(6-methyl-5,6-dihydro-1H-indol-3-yl)ethyl]formamide, N-[2-(6-methyl-5,6-dihydro-1H-indol-3-yl)ethyl]formamide, N-[2-(6-methyl-5,6-dihydro-1H-indol-3-yl)ethyl]methanamide, ...].
biodb.DEBUG[2024-09-07 16:03:47.034][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-09-07 16:03:47.035][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-09-07 16:03:47.037][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:03:47.038][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:03:47.038][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:03:47.043][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:03:47.043][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:03:47.044][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:03:47.045][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:03:47.050][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.04897142:226.06897142[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2024-09-07 16:03:47.052][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-09-07 16:03:47.053][cch$loadFileContent] Trying to load 1 files from cache: [1]: "6eb047352a5797ace7dc0cd8f5af7cbf".
biodb.TRACE[2024-09-07 16:03:47.054][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-09-07 16:03:47.055][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/6eb047352a5797ace7dc0cd8f5af7cbf.content".
biodb.DEBUG[2024-09-07 16:03:47.056][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-09-07 16:03:47.057][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:03:47.058][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:03:47.059][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:03:47.062][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:03:47.063][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:03:47.064][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:03:47.064][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:03:47.065][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:47.066][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:47.067][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:47.067][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:47.068][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:47.069][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:47.069][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:47.070][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:47.071][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:47.072][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:47.072][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:47.073][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:47.074][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:47.075][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:47.075][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:47.076][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:47.077][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:47.077][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:47.078][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:47.079][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:47.079][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:47.080][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:47.081][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:47.082][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:47.082][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:47.083][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:47.084][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:47.084][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:47.085][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:47.086][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:47.087][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:47.087][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:47.088][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:47.089][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:47.089][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:47.090][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:47.091][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:47.091][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:47.092][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:47.093][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:47.094][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:47.094][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:47.095][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:47.096][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:47.096][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:47.097][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:47.098][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:47.098][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:47.099][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:03:47.100][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:03:47.101][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:47.101][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:47.102][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:03:47.103][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:03:47.103][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:47.110][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:47.111][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:03:47.112][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:03:47.113][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:47.114][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:47.115][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:03:47.116][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:03:47.116][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:47.117][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:47.118][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:03:47.119][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:03:47.119][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:47.120][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:47.121][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:03:47.121][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:03:47.122][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:47.123][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:47.124][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-09-07 16:03:47.124][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-09-07 16:03:47.125][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:47.126][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:47.126][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-09-07 16:03:47.127][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-09-07 16:03:47.128][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:47.129][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:47.129][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:47.130][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:47.131][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:47.131][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:47.132][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:47.133][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:47.134][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:47.134][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:47.135][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:47.136][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:47.137][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:47.137][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:47.138][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:47.139][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:47.139][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:47.140][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:47.141][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:03:47.142][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:03:47.142][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:47.143][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:47.144][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:03:47.145][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:03:47.145][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:47.146][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:47.147][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:47.147][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:47.148][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:47.149][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:47.150][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:47.150][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:47.151][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:47.152][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:47.152][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:47.153][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:47.154][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:47.154][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:47.155][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:47.156][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:47.157][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:47.157][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:47.158][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:47.159][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:47.160][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:47.160][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:47.161][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:47.162][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:47.162][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:47.163][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:47.164][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-09-07 16:03:47.165][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-09-07 16:03:47.165][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:47.166][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:47.167][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-09-07 16:03:47.167][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-09-07 16:03:47.168][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:47.169][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:47.169][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-09-07 16:03:47.170][private$selectFields]
biodb.TRACE[2024-09-07 16:03:47.171][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-09-07 16:03:47.171][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-09-07 16:03:47.172][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-09-07 16:03:47.173][ef$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:47.174][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:47.174][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:47.175][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:47.176][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:47.176][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:47.177][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:47.178][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:47.178][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:47.179][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:47.180][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:47.180][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:47.181][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:47.182][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:47.183][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:47.183][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:47.184][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:47.185][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:47.185][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:47.186][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:47.187][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:47.188][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:47.188][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:47.189][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:47.190][ef$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:03:47.190][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:03:47.191][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:47.192][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:47.192][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:03:47.193][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:03:47.194][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:47.195][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:47.195][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:03:47.196][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:03:47.197][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:47.198][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:47.199][ef$get] Asked field names are: logp.
biodb.TRACE[2024-09-07 16:03:47.199][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-09-07 16:03:47.200][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:47.201][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:47.201][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:47.202][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:47.203][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:47.204][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:47.204][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:47.205][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:47.206][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:47.206][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:47.207][ef$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:03:47.208][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:03:47.208][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:47.209][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:47.210][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:47.211][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:47.211][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:47.212][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:47.213][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:47.213][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:47.214][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:47.215][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:47.216][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:47.216][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:47.217][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:47.218][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:47.218][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-09-07 16:03:47.219][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-09-07 16:03:47.220][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:47.220][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:47.221][ef$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:47.222][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:47.223][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:47.223][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:47.224][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:47.225][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:47.225][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:47.226][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:47.227][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:47.227][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:47.228][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:47.229][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:47.230][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:47.231][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:47.231][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:47.232][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:47.233][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:47.233][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:47.234][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:47.235][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:47.235][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:47.236][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:47.237][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:47.238][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:47.238][ef$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:03:47.239][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:03:47.240][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:47.240][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:47.241][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:03:47.242][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:03:47.242][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:47.243][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:47.244][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:03:47.245][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:03:47.245][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:47.246][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:47.247][ef$get] Asked field names are: logp.
biodb.TRACE[2024-09-07 16:03:47.248][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-09-07 16:03:47.248][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:47.249][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:47.250][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:47.251][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:47.251][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:47.252][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:47.253][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:47.253][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:47.254][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:47.255][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:47.255][ef$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:03:47.256][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:03:47.257][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:47.257][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:47.258][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:47.259][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:47.260][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:47.260][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:47.261][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:47.262][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:47.262][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:47.263][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:47.264][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:47.264][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:47.265][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:47.266][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:47.266][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-09-07 16:03:47.267][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-09-07 16:03:47.268][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:47.269][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:47.269][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-09-07 16:03:47.270][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-09-07 16:03:47.271][ef$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:47.272][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:47.272][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:47.273][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:47.274][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:47.274][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:47.275][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:47.276][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:47.276][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:47.277][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:47.278][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:47.279][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:47.280][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:47.280][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:47.281][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:47.282][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:47.282][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:47.283][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:47.284][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:47.285][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:47.285][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:47.286][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:47.287][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:47.288][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:47.288][ef$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:03:47.289][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:03:47.290][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:47.291][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:47.291][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:03:47.292][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:03:47.293][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:47.293][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:47.294][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:03:47.295][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:03:47.296][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:47.296][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:47.297][ef$get] Asked field names are: logp.
biodb.TRACE[2024-09-07 16:03:47.298][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-09-07 16:03:47.299][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:47.299][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:47.300][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:47.301][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:47.301][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:47.302][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:47.303][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:47.304][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:47.305][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:47.305][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:47.306][ef$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:03:47.307][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:03:47.307][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:47.308][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:47.309][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:47.309][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:47.310][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:47.311][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:47.311][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:47.312][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:47.313][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:47.314][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:47.314][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:47.315][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:47.316][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:47.316][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:47.317][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2024-09-07 16:03:47.318][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:47.319][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:47.319][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:47.320][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:47.321][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:47.321][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:47.322][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:47.323][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:47.323][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:47.324][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:47.325][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:47.326][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:47.326][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:47.327][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:47.328][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:47.329][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:47.329][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:47.330][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:47.331][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:47.332][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:47.332][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:47.333][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:47.334][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:47.335][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:47.335][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:47.336][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:47.337][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:47.337][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:47.338][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:47.339][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:47.340][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:47.340][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:47.341][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:47.342][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:47.342][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:47.343][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:47.349][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:47.350][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:47.351][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:47.352][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:47.353][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:47.354][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:47.355][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:47.356][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:47.357][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:47.357][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:47.358][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:47.359][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:47.360][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:47.360][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:47.361][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:47.362][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:47.362][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:47.363][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:47.364][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:47.365][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:47.365][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:47.366][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:47.367][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:47.367][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:47.368][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:47.369][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:47.370][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:47.370][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:47.371][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:47.372][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:47.373][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:47.373][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:47.374][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:47.375][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:47.376][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:47.376][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:47.377][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:03:47.378][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:03:47.379][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:47.379][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:47.380][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:03:47.381][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:03:47.382][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:47.382][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:47.383][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:03:47.384][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:03:47.385][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:47.385][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:47.386][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:03:47.387][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:03:47.388][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:47.388][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:47.389][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:03:47.390][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:03:47.391][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:47.391][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:47.392][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:03:47.393][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:03:47.393][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:47.394][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:47.395][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:03:47.396][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:03:47.396][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:47.397][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:47.398][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:03:47.399][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:03:47.400][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:47.400][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:47.401][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:03:47.402][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:03:47.402][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:47.403][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:47.404][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-09-07 16:03:47.405][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-09-07 16:03:47.405][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:47.406][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:47.407][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-09-07 16:03:47.408][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-09-07 16:03:47.408][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:47.409][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:47.410][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-09-07 16:03:47.410][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-09-07 16:03:47.411][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:47.412][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:47.413][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:47.413][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:47.414][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:47.415][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:47.415][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:47.416][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:47.417][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:47.418][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:47.418][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:47.419][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:47.420][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:47.420][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:47.421][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:47.422][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:47.423][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:47.423][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:47.424][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:47.425][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:47.426][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:47.426][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:47.427][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:47.428][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:47.429][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:47.429][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:47.430][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:03:47.431][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:03:47.432][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:47.432][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:47.433][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:03:47.434][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:03:47.435][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:47.435][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:47.436][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:03:47.437][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:03:47.437][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:47.438][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:47.439][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:47.440][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:47.441][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:47.441][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:47.442][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:47.443][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:47.443][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:47.444][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:47.445][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:47.446][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:47.446][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:47.447][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:47.448][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:47.449][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:47.449][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:47.450][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:47.451][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:47.451][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:47.452][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:47.453][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:47.454][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:47.454][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:47.455][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:47.456][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:47.456][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:47.457][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:47.458][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:47.459][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:47.459][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:47.460][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:47.461][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:47.461][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:47.462][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:47.463][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:47.464][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:47.464][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:47.471][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [171920436, 5-[2-(3-hydroxyphenyl)ethynyl]benzene-1,3-diol, 5-[2-(3-hydroxyphenyl)ethynyl]benzene-1,3-diol, 5-[2-(3-hydroxyphenyl)ethynyl]benzene-1,3-diol, 5-[2-(3-hydroxyphenyl)ethynyl]benzene-1,3-diol, ...].
biodb.DEBUG[2024-09-07 16:03:47.472][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:03:47.472][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:03:47.473][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:03:47.478][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:03:47.478][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:03:47.479][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:03:47.480][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:03:47.480][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:47.481][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:47.482][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:47.483][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:47.483][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:47.484][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:47.485][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:47.485][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:47.486][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:47.487][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:47.488][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:47.488][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:47.489][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:47.490][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:47.490][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:47.491][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:47.492][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:47.493][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:47.493][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:47.494][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:47.495][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:47.495][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:47.496][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:47.497][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:47.498][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:47.498][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:47.499][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:47.500][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:47.500][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:47.501][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:47.502][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:47.502][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:47.503][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:47.504][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:47.505][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:47.506][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:47.506][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:47.507][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:47.508][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:47.508][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:47.509][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:47.510][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:47.511][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:47.511][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:47.512][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:47.513][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:47.513][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:47.514][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:47.515][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:03:47.516][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:03:47.517][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:47.517][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:47.518][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:03:47.519][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:03:47.519][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:47.520][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:47.521][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:03:47.522][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:03:47.522][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:47.523][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:47.524][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:03:47.524][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:03:47.525][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:47.526][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:47.527][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:03:47.527][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:03:47.528][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:47.529][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:47.529][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:03:47.530][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:03:47.531][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:47.532][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:47.532][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-09-07 16:03:47.533][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-09-07 16:03:47.534][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:47.534][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:47.535][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-09-07 16:03:47.536][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-09-07 16:03:47.536][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:47.537][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:47.538][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:47.539][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:47.540][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:47.540][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:47.541][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:47.542][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:47.543][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:47.543][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:47.544][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:47.545][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:47.545][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:47.546][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:47.547][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:47.548][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:47.548][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:47.549][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:47.550][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:03:47.550][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:03:47.551][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:47.552][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:47.552][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:03:47.553][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:03:47.554][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:47.555][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:47.555][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:47.556][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:47.557][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:47.557][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:47.558][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:47.559][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:47.560][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:47.560][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:47.561][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:47.562][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:47.562][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:47.563][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:47.564][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:47.565][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:47.565][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:47.566][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:47.567][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:47.567][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:47.568][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:47.569][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:47.570][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:47.571][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:47.571][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:47.572][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:47.573][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-09-07 16:03:47.574][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-09-07 16:03:47.574][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:47.575][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:47.576][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-09-07 16:03:47.577][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-09-07 16:03:47.577][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:47.578][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:47.579][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-09-07 16:03:47.580][private$selectFields]
biodb.TRACE[2024-09-07 16:03:47.581][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-09-07 16:03:47.581][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-09-07 16:03:47.582][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-09-07 16:03:47.583][ef$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:47.583][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:47.584][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:47.585][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:47.591][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:47.592][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:47.593][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:47.594][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:47.595][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:47.596][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:47.597][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:47.598][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:47.598][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:47.599][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:47.600][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:47.600][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:47.601][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:47.602][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:47.603][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:47.603][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:47.604][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:47.605][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:47.605][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:47.606][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:47.607][ef$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:03:47.608][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:03:47.608][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:47.609][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:47.610][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:03:47.610][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:03:47.611][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:47.612][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:47.612][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:03:47.613][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:03:47.614][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:47.615][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:47.615][ef$get] Asked field names are: logp.
biodb.TRACE[2024-09-07 16:03:47.616][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-09-07 16:03:47.617][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:47.617][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:47.618][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:47.619][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:47.620][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:47.620][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:47.621][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:47.622][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:47.622][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:47.623][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:47.624][ef$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:03:47.625][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:03:47.625][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:47.626][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:47.627][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:47.627][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:47.628][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:47.629][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:47.629][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:47.630][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:47.631][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:47.632][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:47.633][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:47.633][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:47.634][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:47.635][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:47.635][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-09-07 16:03:47.636][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-09-07 16:03:47.637][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:47.637][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:47.638][ef$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:47.639][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:47.640][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:47.640][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:47.641][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:47.642][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:47.642][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:47.643][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:47.644][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:47.645][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:47.645][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:47.646][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:47.647][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:47.647][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:47.648][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:47.649][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:47.649][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:47.650][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:47.651][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:47.651][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:47.652][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:47.653][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:47.654][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:47.654][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:47.655][ef$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:03:47.656][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:03:47.656][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:47.657][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:47.658][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:03:47.659][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:03:47.659][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:47.660][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:47.661][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:03:47.661][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:03:47.662][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:47.663][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:47.663][ef$get] Asked field names are: logp.
biodb.TRACE[2024-09-07 16:03:47.664][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-09-07 16:03:47.665][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:47.665][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:47.666][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:47.667][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:47.668][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:47.668][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:47.669][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:47.670][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:47.670][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:47.671][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:47.672][ef$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:03:47.673][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:03:47.673][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:47.674][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:47.675][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:47.675][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:47.676][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:47.677][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:47.677][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:47.678][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:47.679][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:47.680][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:47.680][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:47.681][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:47.682][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:47.683][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:47.683][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-09-07 16:03:47.684][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-09-07 16:03:47.685][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:47.686][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:47.686][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-09-07 16:03:47.687][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-09-07 16:03:47.688][ef$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:47.689][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:47.689][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:47.690][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:47.691][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:47.692][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:47.692][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:47.693][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:47.694][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:47.694][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:47.695][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:47.696][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:47.697][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:47.697][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:47.698][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:47.699][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:47.700][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:47.700][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:47.701][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:47.702][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:47.702][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:47.703][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:47.704][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:47.704][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:47.705][ef$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:03:47.706][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:03:47.707][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:47.707][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:47.708][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:03:47.709][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:03:47.709][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:47.710][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:47.711][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:03:47.712][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:03:47.712][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:47.713][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:47.714][ef$get] Asked field names are: logp.
biodb.TRACE[2024-09-07 16:03:47.714][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-09-07 16:03:47.715][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:47.716][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:47.716][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:47.717][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:47.718][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:47.719][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:47.719][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:47.720][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:47.721][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:47.721][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:47.722][ef$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:03:47.723][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:03:47.723][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:47.724][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:47.725][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:47.726][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:47.726][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:47.727][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:47.728][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:47.728][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:47.729][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:47.730][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:47.731][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:47.731][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:47.732][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:47.733][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:47.734][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2024-09-07 16:03:47.734][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:47.735][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:47.736][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:47.737][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:47.737][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:47.738][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:47.739][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:47.739][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:47.740][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:47.741][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:47.742][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:47.743][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:47.743][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:47.744][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:47.745][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:47.746][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:47.746][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:47.747][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:47.748][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:47.749][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:47.749][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:47.750][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:47.751][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:47.752][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:47.752][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:47.753][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:47.754][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:47.754][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:47.755][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:47.756][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:47.757][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:47.758][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:47.758][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:47.759][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:47.760][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:47.760][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:47.761][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:47.762][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:47.763][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:47.763][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:47.764][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:47.765][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:47.766][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:47.766][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:47.767][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:47.768][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:47.768][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:47.769][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:47.770][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:47.771][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:47.771][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:47.772][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:47.773][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:47.773][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:47.774][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:47.775][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:47.776][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:47.776][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:47.777][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:47.778][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:47.778][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:47.779][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:47.780][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:47.781][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:47.781][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:47.782][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:47.783][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:47.784][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:47.784][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:47.785][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:47.786][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:47.786][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:47.787][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:03:47.788][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:03:47.789][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:47.789][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:47.790][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:03:47.791][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:03:47.792][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:47.792][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:47.793][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:03:47.794][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:03:47.794][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:47.795][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:47.796][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:03:47.797][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:03:47.797][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:47.798][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:47.799][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:03:47.800][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:03:47.800][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:47.801][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:47.802][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:03:47.802][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:03:47.803][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:47.804][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:47.805][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:03:47.806][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:03:47.806][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:47.807][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:47.808][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:03:47.808][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:03:47.809][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:47.810][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:47.811][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:03:47.811][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:03:47.812][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:47.813][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:47.813][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-09-07 16:03:47.814][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-09-07 16:03:47.815][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:47.816][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:47.816][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-09-07 16:03:47.817][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-09-07 16:03:47.818][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:47.818][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:47.819][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-09-07 16:03:47.820][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-09-07 16:03:47.821][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:47.821][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:47.822][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:47.823][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:47.824][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:47.824][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:47.825][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:47.831][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:47.832][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:47.833][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:47.834][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:47.835][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:47.836][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:47.837][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:47.838][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:47.839][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:47.839][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:47.840][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:47.841][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:47.842][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:47.842][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:47.843][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:47.844][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:47.844][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:47.845][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:47.846][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:47.847][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:03:47.848][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:03:47.848][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:47.849][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:47.850][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:03:47.851][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:03:47.851][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:47.852][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:47.853][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:03:47.854][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:03:47.855][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:47.855][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:47.856][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:47.857][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:47.858][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:47.858][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:47.859][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:47.860][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:47.861][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:47.862][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:47.862][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:47.863][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:47.864][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:47.865][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:47.865][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:47.866][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:47.867][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:47.868][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:47.868][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:47.869][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:47.870][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:47.871][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:47.871][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:47.872][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:47.873][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:47.874][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:47.874][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:47.875][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:47.876][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:47.877][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:47.877][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:47.878][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:47.879][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:47.880][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:47.880][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:47.881][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:47.882][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:47.882][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:47.889][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [171900686, 4-(2-chloro-6-methyl-3-pyridyl)-3,4-dihydroxy-butanenitrile, 4-(2-chloro-6-methyl-3-pyridinyl)-3,4-dihydroxybutanenitrile, 4-(2-chloro-6-methylpyridin-3-yl)-3,4-dihydroxybutanenitrile, 4-(2-chloranyl-6-methyl-pyridin-3-yl)-3,4-bis(oxidanyl)butanenitrile, ...].
biodb.DEBUG[2024-09-07 16:03:47.890][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:03:47.890][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:03:47.891][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:03:47.895][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:03:47.896][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:03:47.897][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:03:47.897][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:03:47.898][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:47.899][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:47.900][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:47.901][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:47.901][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:47.902][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:47.903][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:47.904][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:47.904][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:47.905][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:47.906][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:47.907][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:47.908][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:47.908][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:47.909][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:47.910][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:47.911][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:47.911][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:47.912][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:47.913][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:47.913][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:47.914][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:47.915][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:47.916][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:47.917][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:47.918][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:47.918][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:47.919][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:47.920][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:47.921][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:47.921][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:47.922][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:47.923][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:47.924][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:47.924][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:47.925][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:47.926][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:47.926][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:47.927][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:47.928][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:47.929][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:47.929][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:47.930][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:47.931][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:47.931][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:47.932][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:47.933][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:47.934][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:47.934][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:03:47.935][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:03:47.936][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:47.937][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:47.937][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:03:47.938][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:03:47.939][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:47.939][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:47.940][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:03:47.941][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:03:47.941][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:47.942][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:47.943][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:03:47.944][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:03:47.945][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:47.945][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:47.946][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:03:47.947][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:03:47.947][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:47.948][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:47.949][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:03:47.950][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:03:47.950][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:47.951][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:47.952][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-09-07 16:03:47.952][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-09-07 16:03:47.953][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:47.954][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:47.955][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-09-07 16:03:47.955][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-09-07 16:03:47.956][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:47.957][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:47.958][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:47.958][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:47.959][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:47.960][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:47.960][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:47.961][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:47.962][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:47.962][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:47.963][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:47.964][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:47.965][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:47.965][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:47.966][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:47.967][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:47.968][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:47.968][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:47.969][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:03:47.970][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:03:47.971][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:47.971][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:47.972][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:03:47.973][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:03:47.973][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:47.974][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:47.975][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:47.976][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:47.976][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:47.977][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:47.978][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:47.978][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:47.979][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:47.980][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:47.981][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:47.981][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:47.982][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:47.983][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:47.983][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:47.984][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:47.985][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:47.985][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:47.986][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:47.987][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:47.988][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:47.989][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:47.989][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:47.990][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:47.991][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:47.992][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:47.992][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-09-07 16:03:47.993][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-09-07 16:03:47.994][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:47.995][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:47.995][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-09-07 16:03:47.996][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-09-07 16:03:47.997][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:47.997][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:47.998][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-09-07 16:03:47.999][private$selectFields]
biodb.TRACE[2024-09-07 16:03:48.000][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-09-07 16:03:48.000][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-09-07 16:03:48.001][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-09-07 16:03:48.002][ef$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:48.002][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:48.003][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:48.004][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:48.004][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:48.005][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:48.006][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:48.007][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:48.007][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:48.008][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:48.009][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:48.009][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:48.010][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:48.011][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:48.011][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:48.012][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:48.013][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:48.014][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:48.014][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:48.015][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:48.016][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:48.016][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:48.017][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:48.018][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:48.018][ef$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:03:48.019][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:03:48.020][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:48.021][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:48.021][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:03:48.022][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:03:48.023][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:48.023][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:48.024][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:03:48.025][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:03:48.026][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:48.026][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:48.027][ef$get] Asked field names are: logp.
biodb.TRACE[2024-09-07 16:03:48.028][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-09-07 16:03:48.028][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:48.029][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:48.030][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:48.030][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:48.031][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:48.032][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:48.032][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:48.033][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:48.034][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:48.035][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:48.035][ef$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:03:48.036][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:03:48.037][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:48.037][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:48.038][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:48.039][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:48.039][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:48.040][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:48.041][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:48.042][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:48.042][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:48.043][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:48.044][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:48.044][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:48.045][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:48.046][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:48.046][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-09-07 16:03:48.047][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-09-07 16:03:48.048][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:48.049][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:48.049][ef$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:48.050][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:48.051][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:48.051][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:48.052][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:48.053][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:48.054][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:48.055][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:48.055][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:48.056][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:48.057][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:48.057][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:48.058][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:48.059][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:48.059][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:48.060][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:48.061][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:48.062][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:48.062][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:48.063][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:48.064][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:48.064][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:48.065][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:48.066][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:48.066][ef$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:03:48.067][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:03:48.073][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:48.074][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:48.075][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:03:48.076][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:03:48.077][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:48.078][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:48.079][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:03:48.080][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:03:48.080][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:48.081][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:48.082][ef$get] Asked field names are: logp.
biodb.TRACE[2024-09-07 16:03:48.083][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-09-07 16:03:48.083][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:48.084][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:48.085][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:48.085][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:48.086][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:48.087][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:48.087][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:48.088][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:48.089][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:48.090][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:48.090][ef$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:03:48.091][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:03:48.092][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:48.092][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:48.093][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:48.094][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:48.094][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:48.095][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:48.096][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:48.097][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:48.097][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:48.098][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:48.099][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:48.099][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:48.100][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:48.101][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:48.102][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-09-07 16:03:48.102][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-09-07 16:03:48.103][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:48.104][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:48.105][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-09-07 16:03:48.106][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-09-07 16:03:48.106][ef$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:48.107][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:48.108][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:48.108][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:48.109][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:48.110][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:48.111][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:48.111][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:48.112][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:48.113][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:48.113][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:48.114][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:48.115][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:48.116][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:48.116][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:48.117][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:48.118][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:48.118][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:48.119][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:48.120][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:48.120][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:48.121][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:48.122][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:48.123][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:48.124][ef$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:03:48.125][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:03:48.125][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:48.126][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:48.127][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:03:48.127][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:03:48.128][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:48.129][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:48.130][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:03:48.130][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:03:48.131][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:48.132][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:48.132][ef$get] Asked field names are: logp.
biodb.TRACE[2024-09-07 16:03:48.133][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-09-07 16:03:48.134][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:48.134][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:48.135][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:48.136][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:48.137][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:48.137][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:48.138][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:48.139][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:48.139][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:48.140][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:48.141][ef$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:03:48.142][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:03:48.142][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:48.143][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:48.144][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:48.144][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:48.145][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:48.146][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:48.146][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:48.147][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:48.148][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:48.148][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:48.149][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:48.150][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:48.151][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:48.151][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:48.152][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2024-09-07 16:03:48.153][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:48.154][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:48.154][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:48.155][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:48.156][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:48.157][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:48.157][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:48.158][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:48.159][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:48.159][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:48.160][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:48.161][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:48.162][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:48.163][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:48.163][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:48.164][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:48.165][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:48.165][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:48.166][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:48.167][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:48.168][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:48.168][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-09-07 16:03:48.169][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:48.170][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:48.171][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:48.171][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:48.172][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:48.173][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:48.173][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:48.174][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:48.175][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:48.176][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:48.176][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:48.177][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-09-07 16:03:48.178][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:48.178][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:48.179][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:48.180][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:48.181][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:48.181][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:48.182][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:48.183][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:48.184][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:48.184][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:48.185][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:48.186][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-09-07 16:03:48.186][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:48.187][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:48.188][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:48.189][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:48.189][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:48.190][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:48.191][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:48.192][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:48.192][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:48.193][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:48.194][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:48.194][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:03:48.195][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:48.196][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:48.197][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:48.197][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:48.198][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:48.199][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:48.200][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:48.201][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:48.201][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:48.202][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:48.203][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:48.203][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-09-07 16:03:48.204][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:48.205][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:48.206][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:03:48.206][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:03:48.207][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:48.208][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:48.208][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:03:48.209][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:03:48.210][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:48.210][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:48.211][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:03:48.212][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:03:48.213][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:48.213][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:48.214][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:03:48.215][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:03:48.216][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:48.216][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:48.217][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:03:48.218][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:03:48.218][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:48.219][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:48.220][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:03:48.221][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:03:48.221][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:48.222][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:48.223][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:03:48.224][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:03:48.224][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:48.225][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:48.226][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:03:48.226][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:03:48.227][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:48.228][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:48.228][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:03:48.229][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:03:48.230][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:48.231][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:48.231][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-09-07 16:03:48.232][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-09-07 16:03:48.233][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:48.234][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:48.234][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-09-07 16:03:48.235][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-09-07 16:03:48.236][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:48.236][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:48.237][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-09-07 16:03:48.238][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-09-07 16:03:48.239][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:48.239][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:48.240][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:48.241][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:48.242][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:48.242][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:48.243][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:48.244][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:48.244][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:48.245][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:48.246][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:48.247][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:48.247][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:48.248][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:48.249][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:48.250][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:48.250][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:48.251][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:48.252][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:48.252][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:48.253][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:48.254][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:48.254][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:48.255][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:48.256][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:48.257][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:48.257][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:03:48.258][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:03:48.259][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:48.260][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:48.260][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:03:48.261][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:03:48.262][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:48.263][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:48.263][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:03:48.264][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:03:48.265][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:48.266][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:48.267][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:48.267][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:48.268][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:48.269][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:48.270][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:48.270][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:48.271][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:48.272][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:48.272][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:48.273][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:48.274][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:48.275][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:48.275][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:48.276][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:48.277][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:48.278][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:48.278][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:48.279][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:48.280][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:48.280][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:48.281][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:48.282][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-09-07 16:03:48.283][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:48.283][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:48.284][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:48.285][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:48.286][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:48.286][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:48.287][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:48.288][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:48.288][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:48.289][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:48.290][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:48.291][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-09-07 16:03:48.291][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:48.292][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:48.298][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [171900685, 4-(2-chloro-5-methyl-3-pyridyl)-3,4-dihydroxy-butanenitrile, 4-(2-chloro-5-methyl-3-pyridinyl)-3,4-dihydroxybutanenitrile, 4-(2-chloro-5-methylpyridin-3-yl)-3,4-dihydroxybutanenitrile, 4-(2-chloranyl-5-methyl-pyridin-3-yl)-3,4-bis(oxidanyl)butanenitrile, ...].
biodb.DEBUG[2024-09-07 16:03:48.299][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-09-07 16:03:48.300][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2024-09-07 16:03:48.304][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2024-09-07 16:03:48.305][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2024-09-07 16:03:48.312][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:48.312][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:48.313][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2024-09-07 16:03:48.314][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2024-09-07 16:03:48.315][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:48.316][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2024-09-07 16:03:48.320][biodb$terminate] Closing BiodbMain instance...
biodb.DEBUG[2024-09-07 16:03:48.321][private$conn[[conn]]$.__enclos_env__ ...] Unregister connector ncbi.pubchem.comp from the request scheduler
biodb.INFO [2024-09-07 16:03:48.322][self$deleteConn] Connector "ncbi.pubchem.comp" deleted.
biodb.DEBUG[2024-09-07 16:03:48.322][notifyObservers] Notify observers for terminate.
biodb.DEBUG[2024-09-07 16:03:48.323][FUN] Trying to call function terminate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:03:48.324][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:03:48.324][FUN] Trying to call function terminate on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:03:48.325][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:03:48.326][FUN] Trying to call function terminate on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:03:48.326][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.INFO [2024-09-07 16:03:48.329][biodb::testContext]
biodb.INFO [2024-09-07 16:03:48.330][biodb::testContext] ********************************************************************************
biodb.INFO [2024-09-07 16:03:48.330][biodb::testContext] Test context - Pubchem Subst long tests
biodb.INFO [2024-09-07 16:03:48.331][biodb::testContext] ********************************************************************************
biodb.INFO [2024-09-07 16:03:48.332][biodb::testContext]
biodb.INFO [2024-09-07 16:03:48.333][private$loadBiodbPkgsDefinitions] Loading definitions from package biodb version 1.13.0.
biodb.DEBUG[2024-09-07 16:03:48.335][self$loadDefinitions] Load definitions from file "/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/biodb/definitions.yml".
biodb.DEBUG[2024-09-07 16:03:48.338][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-09-07 16:03:48.339][self$getConfig()$define] Define config key allow.huge.downloads.
biodb.DEBUG[2024-09-07 16:03:48.339][self$set] Set key allow.huge.downloads to TRUE.
biodb.DEBUG[2024-09-07 16:03:48.340][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-09-07 16:03:48.341][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:03:48.341][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:03:48.342][self$getConfig()$define] Define config key autoload.extra.pkgs.
biodb.DEBUG[2024-09-07 16:03:48.343][self$set] Set key autoload.extra.pkgs to TRUE.
biodb.DEBUG[2024-09-07 16:03:48.344][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-09-07 16:03:48.344][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:03:48.345][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:03:48.346][self$getConfig()$define] Define config key cache.all.requests.
biodb.DEBUG[2024-09-07 16:03:48.346][self$set] Set key cache.all.requests to TRUE.
biodb.DEBUG[2024-09-07 16:03:48.347][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-09-07 16:03:48.348][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:03:48.348][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:03:48.349][self$getConfig()$define] Define config key cache.directory.
biodb.DEBUG[2024-09-07 16:03:48.350][self$getConfig()$define] Define config key cache.read.only.
biodb.DEBUG[2024-09-07 16:03:48.350][self$set] Set key cache.read.only to FALSE.
biodb.DEBUG[2024-09-07 16:03:48.351][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-09-07 16:03:48.352][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:03:48.352][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:03:48.353][self$getConfig()$define] Define config key cache.subfolders.
biodb.DEBUG[2024-09-07 16:03:48.354][self$getConfig()$define] Define config key cache.system.
biodb.DEBUG[2024-09-07 16:03:48.355][self$set] Set key cache.system to TRUE.
biodb.DEBUG[2024-09-07 16:03:48.355][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-09-07 16:03:48.356][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:03:48.356][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:03:48.357][self$getConfig()$define] Define config key use.cache.for.local.db.
biodb.DEBUG[2024-09-07 16:03:48.358][self$set] Set key use.cache.for.local.db to FALSE.
biodb.DEBUG[2024-09-07 16:03:48.359][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-09-07 16:03:48.359][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:03:48.360][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:03:48.361][self$getConfig()$define] Define config key dwnld.chunk.size.
biodb.DEBUG[2024-09-07 16:03:48.361][self$getConfig()$define] Define config key dwnld.timeout.
biodb.DEBUG[2024-09-07 16:03:48.362][self$set] Set key dwnld.timeout to 3600.
biodb.DEBUG[2024-09-07 16:03:48.363][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-09-07 16:03:48.363][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:03:48.364][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:03:48.365][self$getConfig()$define] Define config key compute.fields.
biodb.DEBUG[2024-09-07 16:03:48.365][self$set] Set key compute.fields to TRUE.
biodb.DEBUG[2024-09-07 16:03:48.366][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-09-07 16:03:48.367][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:03:48.367][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:03:48.368][self$getConfig()$define] Define config key factory.cache.
biodb.DEBUG[2024-09-07 16:03:48.369][self$getConfig()$define] Define config key force.locale.
biodb.DEBUG[2024-09-07 16:03:48.370][self$set] Set key force.locale to TRUE.
biodb.DEBUG[2024-09-07 16:03:48.370][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-09-07 16:03:48.371][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:03:48.371][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:03:48.372][self$getConfig()$define] Define config key longterm.cache.subfolder.
biodb.DEBUG[2024-09-07 16:03:48.373][self$getConfig()$define] Define config key msg.caution.lvl.
biodb.DEBUG[2024-09-07 16:03:48.374][self$getConfig()$define] Define config key msg.debug.lvl.
biodb.DEBUG[2024-09-07 16:03:48.374][self$getConfig()$define] Define config key msg.info.lvl.
biodb.DEBUG[2024-09-07 16:03:48.375][self$getConfig()$define] Define config key multival.field.sep.
biodb.DEBUG[2024-09-07 16:03:48.376][self$set] Set key multival.field.sep to ";".
biodb.DEBUG[2024-09-07 16:03:48.376][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-09-07 16:03:48.377][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:03:48.378][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:03:48.378][self$getConfig()$define] Define config key intra.field.name.sep.
biodb.DEBUG[2024-09-07 16:03:48.379][self$set] Set key intra.field.name.sep to ".".
biodb.DEBUG[2024-09-07 16:03:48.380][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-09-07 16:03:48.380][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:03:48.381][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:03:48.382][self$getConfig()$define] Define config key entries.sep.
biodb.DEBUG[2024-09-07 16:03:48.382][self$set] Set key entries.sep to "|".
biodb.DEBUG[2024-09-07 16:03:48.383][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-09-07 16:03:48.384][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:03:48.384][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:03:48.385][self$getConfig()$define] Define config key offline.
biodb.DEBUG[2024-09-07 16:03:48.386][self$set] Set key offline to FALSE.
biodb.DEBUG[2024-09-07 16:03:48.386][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-09-07 16:03:48.387][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:03:48.388][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:03:48.388][self$getConfig()$define] Define config key persistent.cache.impl.
biodb.DEBUG[2024-09-07 16:03:48.389][self$set] Set key persistent.cache.impl to "custom".
biodb.DEBUG[2024-09-07 16:03:48.390][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-09-07 16:03:48.390][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:03:48.391][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:03:48.392][self$getConfig()$define] Define config key proton.mass.
biodb.DEBUG[2024-09-07 16:03:48.393][self$set] Set key proton.mass to 1.0072765.
biodb.DEBUG[2024-09-07 16:03:48.393][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-09-07 16:03:48.394][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:03:48.395][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:03:48.395][self$getConfig()$define] Define config key shortterm.cache.subfolder.
biodb.DEBUG[2024-09-07 16:03:48.396][self$getConfig()$define] Define config key svn.binary.path.
biodb.DEBUG[2024-09-07 16:03:48.411][self$set] Set key svn.binary.path to "".
biodb.DEBUG[2024-09-07 16:03:48.412][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-09-07 16:03:48.413][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:03:48.413][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:03:48.414][self$getConfig()$define] Define config key test.functions.
biodb.DEBUG[2024-09-07 16:03:48.415][self$getConfig()$define] Define config key useragent.
biodb.DEBUG[2024-09-07 16:03:48.415][self$set] Set key useragent to "R Bioconductor biodb library.".
biodb.DEBUG[2024-09-07 16:03:48.416][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-09-07 16:03:48.417][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:03:48.417][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:03:48.418][self$getDbsInfo()$define] Define connector comp.csv.file.
biodb.DEBUG[2024-09-07 16:03:48.420][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-09-07 16:03:48.420][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields.".
biodb.DEBUG[2024-09-07 16:03:48.421][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-09-07 16:03:48.422][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-09-07 16:03:48.422][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-09-07 16:03:48.423][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-09-07 16:03:48.424][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-09-07 16:03:48.425][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-09-07 16:03:48.425][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2024-09-07 16:03:48.426][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-09-07 16:03:48.427][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-09-07 16:03:48.428][self$setPropertyValue] Setting property "name" to "Compound CSV File".
biodb.DEBUG[2024-09-07 16:03:48.428][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-09-07 16:03:48.429][self$setPropertyValue]
biodb.DEBUG[2024-09-07 16:03:48.430][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-09-07 16:03:48.430][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-09-07 16:03:48.430][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2024-09-07 16:03:48.430][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2024-09-07 16:03:48.430][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2024-09-07 16:03:48.430][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2024-09-07 16:03:48.431][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-09-07 16:03:48.432][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-09-07 16:03:48.433][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-09-07 16:03:48.433][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-09-07 16:03:48.434][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-09-07 16:03:48.435][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-09-07 16:03:48.435][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-09-07 16:03:48.436][self$setPropertyValue]
biodb.DEBUG[2024-09-07 16:03:48.437][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-09-07 16:03:48.437][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-09-07 16:03:48.438][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-09-07 16:03:48.439][self$setPropertyValue]
biodb.DEBUG[2024-09-07 16:03:48.440][self$getDbsInfo()$define] Define connector comp.sqlite.
biodb.DEBUG[2024-09-07 16:03:48.441][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-09-07 16:03:48.442][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside an SQLite file.".
biodb.DEBUG[2024-09-07 16:03:48.442][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-09-07 16:03:48.443][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-09-07 16:03:48.444][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-09-07 16:03:48.444][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-09-07 16:03:48.445][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-09-07 16:03:48.446][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-09-07 16:03:48.447][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2024-09-07 16:03:48.447][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-09-07 16:03:48.448][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-09-07 16:03:48.449][self$setPropertyValue] Setting property "name" to "Compound SQLite".
biodb.DEBUG[2024-09-07 16:03:48.450][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-09-07 16:03:48.450][self$setPropertyValue]
biodb.DEBUG[2024-09-07 16:03:48.451][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-09-07 16:03:48.452][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-09-07 16:03:48.452][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2024-09-07 16:03:48.452][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2024-09-07 16:03:48.452][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2024-09-07 16:03:48.452][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2024-09-07 16:03:48.452][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-09-07 16:03:48.453][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-09-07 16:03:48.454][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-09-07 16:03:48.454][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-09-07 16:03:48.455][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-09-07 16:03:48.456][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-09-07 16:03:48.456][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-09-07 16:03:48.457][self$setPropertyValue]
biodb.DEBUG[2024-09-07 16:03:48.458][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-09-07 16:03:48.459][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-09-07 16:03:48.459][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-09-07 16:03:48.460][self$setPropertyValue]
biodb.DEBUG[2024-09-07 16:03:48.461][self$getDbsInfo()$define] Define connector mass.csv.file.
biodb.DEBUG[2024-09-07 16:03:48.462][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-09-07 16:03:48.463][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields..".
biodb.DEBUG[2024-09-07 16:03:48.464][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-09-07 16:03:48.464][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-09-07 16:03:48.465][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-09-07 16:03:48.466][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-09-07 16:03:48.467][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-09-07 16:03:48.467][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-09-07 16:03:48.468][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2024-09-07 16:03:48.469][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-09-07 16:03:48.469][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2024-09-07 16:03:48.470][self$setPropertyValue] Setting property "name" to "Mass spectra CSV File".
biodb.DEBUG[2024-09-07 16:03:48.471][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-09-07 16:03:48.472][self$setPropertyValue]
biodb.DEBUG[2024-09-07 16:03:48.472][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-09-07 16:03:48.473][self$setPropertyValue]
biodb.DEBUG[2024-09-07 16:03:48.474][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-09-07 16:03:48.474][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-09-07 16:03:48.475][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-09-07 16:03:48.476][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-09-07 16:03:48.476][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-09-07 16:03:48.477][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-09-07 16:03:48.478][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-09-07 16:03:48.478][self$setPropertyValue]
biodb.DEBUG[2024-09-07 16:03:48.479][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-09-07 16:03:48.480][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-09-07 16:03:48.480][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-09-07 16:03:48.481][self$setPropertyValue]
biodb.DEBUG[2024-09-07 16:03:48.482][self$getDbsInfo()$define] Define connector mass.sqlite.
biodb.DEBUG[2024-09-07 16:03:48.483][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-09-07 16:03:48.484][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside an SQLite file.".
biodb.DEBUG[2024-09-07 16:03:48.485][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-09-07 16:03:48.485][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-09-07 16:03:48.486][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-09-07 16:03:48.487][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-09-07 16:03:48.488][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-09-07 16:03:48.488][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-09-07 16:03:48.489][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2024-09-07 16:03:48.490][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-09-07 16:03:48.490][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2024-09-07 16:03:48.491][self$setPropertyValue] Setting property "name" to "Mass spectra SQLite".
biodb.DEBUG[2024-09-07 16:03:48.492][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-09-07 16:03:48.493][self$setPropertyValue]
biodb.DEBUG[2024-09-07 16:03:48.493][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-09-07 16:03:48.494][self$setPropertyValue]
biodb.DEBUG[2024-09-07 16:03:48.495][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-09-07 16:03:48.495][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-09-07 16:03:48.496][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-09-07 16:03:48.497][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-09-07 16:03:48.497][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-09-07 16:03:48.498][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-09-07 16:03:48.499][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-09-07 16:03:48.499][self$setPropertyValue]
biodb.DEBUG[2024-09-07 16:03:48.500][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-09-07 16:03:48.501][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-09-07 16:03:48.501][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-09-07 16:03:48.502][self$setPropertyValue]
biodb.DEBUG[2024-09-07 16:03:48.503][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-09-07 16:03:48.504][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:03:48.504][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:03:48.505][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-09-07 16:03:48.506][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:03:48.506][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:03:48.507][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:03:48.508][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:03:48.508][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-09-07 16:03:48.509][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:03:48.509][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:03:48.510][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:03:48.511][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:03:48.511][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-09-07 16:03:48.512][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:03:48.513][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:03:48.513][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:03:48.514][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:03:48.515][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-09-07 16:03:48.515][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:03:48.516][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:03:48.516][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:03:48.517][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:03:48.518][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-09-07 16:03:48.518][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:03:48.519][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:03:48.520][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:03:48.520][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:03:48.521][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-09-07 16:03:48.522][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:03:48.522][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:03:48.523][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:03:48.523][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:03:48.524][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-09-07 16:03:48.525][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:03:48.525][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:03:48.526][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:03:48.527][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:03:48.527][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-09-07 16:03:48.528][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:03:48.529][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:03:48.529][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:03:48.530][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:03:48.531][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-09-07 16:03:48.531][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:03:48.532][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:03:48.532][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:03:48.533][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:03:48.534][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-09-07 16:03:48.534][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:03:48.535][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:03:48.536][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:03:48.536][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:03:48.537][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-09-07 16:03:48.537][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:03:48.538][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:03:48.539][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:03:48.539][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:03:48.540][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-09-07 16:03:48.541][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:03:48.541][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:03:48.542][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:03:48.543][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:03:48.543][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-09-07 16:03:48.544][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:03:48.545][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:03:48.545][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:03:48.546][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:03:48.546][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-09-07 16:03:48.547][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:03:48.548][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:03:48.548][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:03:48.549][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:03:48.550][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-09-07 16:03:48.550][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:03:48.551][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:03:48.552][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:03:48.552][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:03:48.553][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-09-07 16:03:48.553][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:03:48.554][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:03:48.555][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:03:48.555][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:03:48.556][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-09-07 16:03:48.557][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:03:48.557][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:03:48.558][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:03:48.559][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:03:48.565][self$getEntryFields()$define] Define field accession.
biodb.DEBUG[2024-09-07 16:03:48.567][self$getEntryFields()$define] Define field description.
biodb.DEBUG[2024-09-07 16:03:48.568][self$getEntryFields()$define] Define field name.
biodb.DEBUG[2024-09-07 16:03:48.570][self$getEntryFields()$define] Define field cas.id.
biodb.DEBUG[2024-09-07 16:03:48.571][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2024-09-07 16:03:48.572][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2024-09-07 16:03:48.573][self$getEntryFields()$define] Define field comp.csv.file.id.
biodb.DEBUG[2024-09-07 16:03:48.574][self$getEntryFields()$define] Define field comp.sqlite.id.
biodb.DEBUG[2024-09-07 16:03:48.575][self$getEntryFields()$define] Define field expasy.enzyme.id.
biodb.DEBUG[2024-09-07 16:03:48.576][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2024-09-07 16:03:48.577][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2024-09-07 16:03:48.578][self$getEntryFields()$define] Define field kegg.genes.id.
biodb.DEBUG[2024-09-07 16:03:48.579][self$getEntryFields()$define] Define field mass.csv.file.id.
biodb.DEBUG[2024-09-07 16:03:48.580][self$getEntryFields()$define] Define field mass.sqlite.id.
biodb.DEBUG[2024-09-07 16:03:48.581][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2024-09-07 16:03:48.582][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2024-09-07 16:03:48.583][self$getEntryFields()$define] Define field compound.id.
biodb.DEBUG[2024-09-07 16:03:48.584][self$getEntryFields()$define] Define field average.mass.
biodb.DEBUG[2024-09-07 16:03:48.585][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2024-09-07 16:03:48.586][self$getEntryFields()$define] Define field monoisotopic.mass.
biodb.DEBUG[2024-09-07 16:03:48.587][self$getEntryFields()$define] Define field nominal.mass.
biodb.DEBUG[2024-09-07 16:03:48.588][self$getEntryFields()$define] Define field peak.attr.
biodb.DEBUG[2024-09-07 16:03:48.589][self$getEntryFields()$define] Define field peak.comp.
biodb.DEBUG[2024-09-07 16:03:48.590][self$getEntryFields()$define] Define field peak.error.ppm.
biodb.DEBUG[2024-09-07 16:03:48.591][self$getEntryFields()$define] Define field peak.formula.
biodb.DEBUG[2024-09-07 16:03:48.592][self$getEntryFields()$define] Define field peak.intensity.
biodb.DEBUG[2024-09-07 16:03:48.593][self$getEntryFields()$define] Define field peak.mass.
biodb.DEBUG[2024-09-07 16:03:48.594][self$getEntryFields()$define] Define field peak.mztheo.
biodb.DEBUG[2024-09-07 16:03:48.595][self$getEntryFields()$define] Define field peak.mzexp.
biodb.DEBUG[2024-09-07 16:03:48.596][self$getEntryFields()$define] Define field peak.mz.
biodb.DEBUG[2024-09-07 16:03:48.597][self$getEntryFields()$define] Define field peak.relative.intensity.
biodb.DEBUG[2024-09-07 16:03:48.598][self$getEntryFields()$define] Define field peaks.
biodb.DEBUG[2024-09-07 16:03:48.599][self$getEntryFields()$define] Define field chrom.col.constructor.
biodb.DEBUG[2024-09-07 16:03:48.600][self$getEntryFields()$define] Define field chrom.col.diameter.
biodb.DEBUG[2024-09-07 16:03:48.601][self$getEntryFields()$define] Define field chrom.col.id.
biodb.DEBUG[2024-09-07 16:03:48.602][self$getEntryFields()$define] Define field chrom.col.length.
biodb.DEBUG[2024-09-07 16:03:48.603][self$getEntryFields()$define] Define field chrom.col.method.protocol.
biodb.DEBUG[2024-09-07 16:03:48.604][self$getEntryFields()$define] Define field chrom.col.name.
biodb.DEBUG[2024-09-07 16:03:48.605][self$getEntryFields()$define] Define field chrom.flow.gradient.
biodb.DEBUG[2024-09-07 16:03:48.606][self$getEntryFields()$define] Define field chrom.flow.rate.
biodb.DEBUG[2024-09-07 16:03:48.607][self$getEntryFields()$define] Define field chrom.rt.
biodb.DEBUG[2024-09-07 16:03:48.608][self$getEntryFields()$define] Define field chrom.rt.max.
biodb.DEBUG[2024-09-07 16:03:48.609][self$getEntryFields()$define] Define field chrom.rt.min.
biodb.DEBUG[2024-09-07 16:03:48.610][self$getEntryFields()$define] Define field chrom.rt.unit.
biodb.DEBUG[2024-09-07 16:03:48.611][self$getEntryFields()$define] Define field chrom.solvent.
biodb.DEBUG[2024-09-07 16:03:48.612][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2024-09-07 16:03:48.613][self$getEntryFields()$define] Define field aa.seq.length.
biodb.DEBUG[2024-09-07 16:03:48.614][self$getEntryFields()$define] Define field aa.seq.location.
biodb.DEBUG[2024-09-07 16:03:48.615][self$getEntryFields()$define] Define field nt.seq.
biodb.DEBUG[2024-09-07 16:03:48.616][self$getEntryFields()$define] Define field nt.seq.length.
biodb.DEBUG[2024-09-07 16:03:48.617][self$getEntryFields()$define] Define field ec.
biodb.DEBUG[2024-09-07 16:03:48.618][self$getEntryFields()$define] Define field organism.
biodb.DEBUG[2024-09-07 16:03:48.619][self$getEntryFields()$define] Define field pathway.class.
biodb.DEBUG[2024-09-07 16:03:48.620][self$getEntryFields()$define] Define field catalytic.activity.
biodb.DEBUG[2024-09-07 16:03:48.621][self$getEntryFields()$define] Define field cofactor.
biodb.DEBUG[2024-09-07 16:03:48.622][self$getEntryFields()$define] Define field gene.symbol.
biodb.DEBUG[2024-09-07 16:03:48.623][self$getEntryFields()$define] Define field charge.
biodb.DEBUG[2024-09-07 16:03:48.624][self$getEntryFields()$define] Define field comp.iupac.name.allowed.
biodb.DEBUG[2024-09-07 16:03:48.625][self$getEntryFields()$define] Define field comp.iupac.name.cas.
biodb.DEBUG[2024-09-07 16:03:48.626][self$getEntryFields()$define] Define field comp.iupac.name.pref.
biodb.DEBUG[2024-09-07 16:03:48.627][self$getEntryFields()$define] Define field comp.iupac.name.syst.
biodb.DEBUG[2024-09-07 16:03:48.628][self$getEntryFields()$define] Define field comp.iupac.name.trad.
biodb.DEBUG[2024-09-07 16:03:48.629][self$getEntryFields()$define] Define field comp.super.class.
biodb.DEBUG[2024-09-07 16:03:48.630][self$getEntryFields()$define] Define field equation.
biodb.DEBUG[2024-09-07 16:03:48.631][self$getEntryFields()$define] Define field formula.
biodb.DEBUG[2024-09-07 16:03:48.632][self$getEntryFields()$define] Define field composition.
biodb.DEBUG[2024-09-07 16:03:48.633][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2024-09-07 16:03:48.634][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2024-09-07 16:03:48.635][self$getEntryFields()$define] Define field logp.
biodb.DEBUG[2024-09-07 16:03:48.636][self$getEntryFields()$define] Define field ms.level.
biodb.DEBUG[2024-09-07 16:03:48.637][self$getEntryFields()$define] Define field ms.mode.
biodb.DEBUG[2024-09-07 16:03:48.638][self$getEntryFields()$define] Define field msdev.
biodb.DEBUG[2024-09-07 16:03:48.639][self$getEntryFields()$define] Define field msdevtype.
biodb.DEBUG[2024-09-07 16:03:48.640][self$getEntryFields()$define] Define field msprecannot.
biodb.DEBUG[2024-09-07 16:03:48.641][self$getEntryFields()$define] Define field msprecmz.
biodb.DEBUG[2024-09-07 16:03:48.642][self$getEntryFields()$define] Define field mstype.
biodb.DEBUG[2024-09-07 16:03:48.643][self$getEntryFields()$define] Define field nb.compounds.
biodb.DEBUG[2024-09-07 16:03:48.644][self$getEntryFields()$define] Define field nb.peaks.
biodb.DEBUG[2024-09-07 16:03:48.645][self$getEntryFields()$define] Define field products.
biodb.DEBUG[2024-09-07 16:03:48.646][self$getEntryFields()$define] Define field smiles.
biodb.DEBUG[2024-09-07 16:03:48.647][self$getEntryFields()$define] Define field smiles.canonical.
biodb.DEBUG[2024-09-07 16:03:48.648][self$getEntryFields()$define] Define field smiles.isomeric.
biodb.DEBUG[2024-09-07 16:03:48.649][self$getEntryFields()$define] Define field substrates.
biodb.DEBUG[2024-09-07 16:03:48.650][initialize] Created successfully new BiodbMain instance.
biodb.DEBUG[2024-09-07 16:03:48.652][initialize] This is biodb version 1.13.0.
biodb.DEBUG[2024-09-07 16:03:48.653][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-09-07 16:03:48.653][FUN] Trying to call function notifyNewObservers on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:03:48.654][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:03:48.655][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:03:48.655][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:03:48.656][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-09-07 16:03:48.657][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:03:48.657][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:03:48.658][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:03:48.659][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:03:48.659][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:03:48.660][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:03:48.661][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-09-07 16:03:48.661][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:03:48.662][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:03:48.663][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:03:48.663][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:03:48.664][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:03:48.665][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:03:48.665][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-09-07 16:03:48.666][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:03:48.667][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:03:48.667][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:03:48.668][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:03:48.668][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:03:48.669][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:03:48.670][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-09-07 16:03:48.670][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:03:48.671][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:03:48.672][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:03:48.672][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:03:48.673][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:03:48.674][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:03:48.674][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-09-07 16:03:48.675][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:03:48.676][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:03:48.676][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:03:48.677][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:03:48.678][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:03:48.678][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:03:48.679][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-09-07 16:03:48.679][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:03:48.680][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:03:48.681][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:03:48.681][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:03:48.682][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:03:48.683][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:03:48.683][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-09-07 16:03:48.684][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:03:48.685][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:03:48.685][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:03:48.686][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:03:48.686][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:03:48.687][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:03:48.688][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-09-07 16:03:48.688][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:03:48.689][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:03:48.690][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:03:48.690][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:03:48.691][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:03:48.692][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:03:48.692][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-09-07 16:03:48.693][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:03:48.693][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:03:48.694][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:03:48.695][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:03:48.695][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:03:48.696][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:03:48.697][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-09-07 16:03:48.697][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:03:48.698][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:03:48.699][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:03:48.699][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:03:48.700][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:03:48.700][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:03:48.701][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-09-07 16:03:48.702][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:03:48.702][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:03:48.703][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:03:48.704][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:03:48.704][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:03:48.705][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:03:48.706][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-09-07 16:03:48.706][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:03:48.707][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:03:48.707][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:03:48.708][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:03:48.709][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:03:48.709][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:03:48.710][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-09-07 16:03:48.711][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:03:48.711][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:03:48.712][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:03:48.713][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:03:48.713][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:03:48.714][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:03:48.714][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-09-07 16:03:48.715][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:03:48.716][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:03:48.716][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:03:48.717][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:03:48.718][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:03:48.719][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:03:48.719][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-09-07 16:03:48.720][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:03:48.721][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:03:48.721][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:03:48.722][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:03:48.723][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:03:48.723][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:03:48.724][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-09-07 16:03:48.725][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:03:48.725][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:03:48.726][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:03:48.726][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:03:48.727][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:03:48.728][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:03:48.728][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-09-07 16:03:48.729][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:03:48.730][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:03:48.730][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:03:48.731][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:03:48.731][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:03:48.732][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:03:48.734][biodb$loadDefinitions] Load definitions from file "/Users/biocbuild/bbs-3.20-bioc-longtests/meat/biodbNcbi.Rcheck/biodbNcbi/definitions.yml".
biodb.DEBUG[2024-09-07 16:03:48.735][self$getDbsInfo()$define] Define connector ncbi.ccds.
biodb.DEBUG[2024-09-07 16:03:48.736][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-09-07 16:03:48.737][self$setPropertyValue] Setting property "description" to "NCBI CCDS database.".
biodb.DEBUG[2024-09-07 16:03:48.738][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-09-07 16:03:48.739][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-09-07 16:03:48.739][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-09-07 16:03:48.740][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-09-07 16:03:48.741][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2024-09-07 16:03:48.741][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-09-07 16:03:48.742][self$setPropertyValue] Setting property "entry.content.type" to "html".
biodb.DEBUG[2024-09-07 16:03:48.743][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-09-07 16:03:48.743][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-09-07 16:03:48.744][self$setPropertyValue] Setting property "name" to "NCBI CCDS".
biodb.DEBUG[2024-09-07 16:03:48.745][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-09-07 16:03:48.746][self$setPropertyValue] Setting property "parsing.expr" to "list(attr = "value", path = "//input[@id='DATA']")".
biodb.DEBUG[2024-09-07 16:03:48.746][self$setPropertyValue] Setting property "parsing.expr" to "//b[starts-with(.,'Nucleotide Sequence')]/../tt".
biodb.DEBUG[2024-09-07 16:03:48.747][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2024-09-07 16:03:48.747][self$setPropertyValue]
biodb.DEBUG[2024-09-07 16:03:48.748][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2024-09-07 16:03:48.749][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-09-07 16:03:48.749][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-09-07 16:03:48.750][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-09-07 16:03:48.751][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-09-07 16:03:48.752][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-09-07 16:03:48.752][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-09-07 16:03:48.753][self$setPropertyValue] Setting property "urls" to "https://www.ncbi.nlm.nih.gov/CCDS/".
biodb.DEBUG[2024-09-07 16:03:48.753][self$setPropertyValue] Setting property "urls" to "https://eutils.ncbi.nlm.nih.gov/entrez/eutils".
biodb.DEBUG[2024-09-07 16:03:48.754][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-09-07 16:03:48.754][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-09-07 16:03:48.755][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2024-09-07 16:03:48.756][self$setPropertyValue]
biodb.DEBUG[2024-09-07 16:03:48.756][self$getDbsInfo()$define] Define connector ncbi.gene.
biodb.DEBUG[2024-09-07 16:03:48.758][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-09-07 16:03:48.759][self$setPropertyValue] Setting property "description" to "NCBI Gene database.".
biodb.DEBUG[2024-09-07 16:03:48.759][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-09-07 16:03:48.760][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-09-07 16:03:48.761][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-09-07 16:03:48.761][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-09-07 16:03:48.762][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2024-09-07 16:03:48.763][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-09-07 16:03:48.763][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2024-09-07 16:03:48.764][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-09-07 16:03:48.765][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-09-07 16:03:48.766][self$setPropertyValue] Setting property "name" to "NCBI Gene".
biodb.DEBUG[2024-09-07 16:03:48.766][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-09-07 16:03:48.767][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-track_geneid".
biodb.DEBUG[2024-09-07 16:03:48.767][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-ref_desc".
biodb.DEBUG[2024-09-07 16:03:48.767][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-ref_maploc".
biodb.DEBUG[2024-09-07 16:03:48.767][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-ref_locus".
biodb.DEBUG[2024-09-07 16:03:48.767][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-ref_syn_E".
biodb.DEBUG[2024-09-07 16:03:48.767][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-commentary_heading[text()='UniProtKB']/..//Dbtag_db[text()='UniProtKB/Swiss-Prot']/..//Object-id_str".
biodb.DEBUG[2024-09-07 16:03:48.768][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2024-09-07 16:03:48.769][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-09-07 16:03:48.769][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2024-09-07 16:03:48.770][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-09-07 16:03:48.771][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-09-07 16:03:48.771][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-09-07 16:03:48.772][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-09-07 16:03:48.773][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-09-07 16:03:48.773][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-09-07 16:03:48.774][self$setPropertyValue] Setting property "urls" to "https://www.ncbi.nlm.nih.gov/".
biodb.DEBUG[2024-09-07 16:03:48.774][self$setPropertyValue] Setting property "urls" to "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/".
biodb.DEBUG[2024-09-07 16:03:48.775][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-09-07 16:03:48.775][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-09-07 16:03:48.776][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2024-09-07 16:03:48.777][self$setPropertyValue]
biodb.DEBUG[2024-09-07 16:03:48.778][self$getDbsInfo()$define] Define connector ncbi.pubchem.comp.
biodb.DEBUG[2024-09-07 16:03:48.779][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-09-07 16:03:48.780][self$setPropertyValue] Setting property "description" to "PubChem Compound database.".
biodb.DEBUG[2024-09-07 16:03:48.781][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-09-07 16:03:48.781][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-09-07 16:03:48.782][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-09-07 16:03:48.783][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-09-07 16:03:48.783][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2024-09-07 16:03:48.784][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-09-07 16:03:48.785][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2024-09-07 16:03:48.786][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-09-07 16:03:48.786][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-09-07 16:03:48.787][self$setPropertyValue] Setting property "name" to "PubChem Compound".
biodb.DEBUG[2024-09-07 16:03:48.788][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-09-07 16:03:48.788][self$setPropertyValue] Setting property "parsing.expr" to "//PC-CompoundType_id_cid".
biodb.DEBUG[2024-09-07 16:03:48.788][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='IUPAC Name']/../PC-Urn_name[text()='Allowed']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-09-07 16:03:48.788][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='IUPAC Name']/../PC-Urn_name[text()='CAS-like Style']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-09-07 16:03:48.788][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='IUPAC Name']/../PC-Urn_name[text()='Preferred']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-09-07 16:03:48.788][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='IUPAC Name']/../PC-Urn_name[text()='Systematic']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-09-07 16:03:48.788][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='IUPAC Name']/../PC-Urn_name[text()='Traditional']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-09-07 16:03:48.788][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='Mass']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-09-07 16:03:48.788][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='Molecular Formula']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-09-07 16:03:48.788][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='InChI']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-09-07 16:03:48.788][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='InChIKey']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-09-07 16:03:48.788][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='Log P']/../../..//PC-InfoData_value_fval".
biodb.DEBUG[2024-09-07 16:03:48.788][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='Molecular Weight']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-09-07 16:03:48.788][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='SMILES']/../PC-Urn_name[text()='Canonical']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-09-07 16:03:48.788][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='SMILES']/../PC-Urn_name[text()='Isomeric']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-09-07 16:03:48.789][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2024-09-07 16:03:48.790][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-09-07 16:03:48.790][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2024-09-07 16:03:48.790][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2024-09-07 16:03:48.791][self$setPropertyValue] Setting property "scheduler.n" to "5".
biodb.DEBUG[2024-09-07 16:03:48.791][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-09-07 16:03:48.792][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-09-07 16:03:48.793][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-09-07 16:03:48.800][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-09-07 16:03:48.801][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-09-07 16:03:48.802][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-09-07 16:03:48.802][self$setPropertyValue] Setting property "urls" to "https://pubchem.ncbi.nlm.nih.gov/".
biodb.DEBUG[2024-09-07 16:03:48.802][self$setPropertyValue] Setting property "urls" to "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/".
biodb.DEBUG[2024-09-07 16:03:48.802][self$setPropertyValue] Setting property "urls" to "https://pubchem.ncbi.nlm.nih.gov/rest/pug/".
biodb.DEBUG[2024-09-07 16:03:48.803][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-09-07 16:03:48.804][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-09-07 16:03:48.805][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2024-09-07 16:03:48.806][self$setPropertyValue] Setting property "xml.ns" to "http://www.ncbi.nlm.nih.gov".
biodb.DEBUG[2024-09-07 16:03:48.807][self$getDbsInfo()$define] Define connector ncbi.pubchem.subst.
biodb.DEBUG[2024-09-07 16:03:48.808][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-09-07 16:03:48.809][self$setPropertyValue] Setting property "description" to "PubChem Substance database.".
biodb.DEBUG[2024-09-07 16:03:48.810][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-09-07 16:03:48.810][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-09-07 16:03:48.811][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-09-07 16:03:48.812][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-09-07 16:03:48.813][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2024-09-07 16:03:48.813][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-09-07 16:03:48.814][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2024-09-07 16:03:48.815][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-09-07 16:03:48.815][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-09-07 16:03:48.816][self$setPropertyValue] Setting property "name" to "PubChem Substance".
biodb.DEBUG[2024-09-07 16:03:48.817][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-09-07 16:03:48.818][self$setPropertyValue] Setting property "parsing.expr" to "//PC-ID_id".
biodb.DEBUG[2024-09-07 16:03:48.818][self$setPropertyValue] Setting property "parsing.expr" to "//PC-CompoundType_id_cid".
biodb.DEBUG[2024-09-07 16:03:48.818][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2024-09-07 16:03:48.819][self$setPropertyValue]
biodb.DEBUG[2024-09-07 16:03:48.820][self$setPropertyValue] Setting property "scheduler.n" to "5".
biodb.DEBUG[2024-09-07 16:03:48.820][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-09-07 16:03:48.821][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-09-07 16:03:48.822][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-09-07 16:03:48.823][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-09-07 16:03:48.823][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-09-07 16:03:48.824][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-09-07 16:03:48.825][self$setPropertyValue] Setting property "urls" to "https://pubchem.ncbi.nlm.nih.gov/".
biodb.DEBUG[2024-09-07 16:03:48.825][self$setPropertyValue] Setting property "urls" to "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/".
biodb.DEBUG[2024-09-07 16:03:48.825][self$setPropertyValue] Setting property "urls" to "https://pubchem.ncbi.nlm.nih.gov/rest/pug/".
biodb.DEBUG[2024-09-07 16:03:48.825][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-09-07 16:03:48.826][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-09-07 16:03:48.827][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2024-09-07 16:03:48.827][self$setPropertyValue] Setting property "xml.ns" to "http://www.ncbi.nlm.nih.gov".
biodb.DEBUG[2024-09-07 16:03:48.828][self$getEntryFields()$define] Define field ncbi.ccds.id.
biodb.DEBUG[2024-09-07 16:03:48.829][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2024-09-07 16:03:48.831][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2024-09-07 16:03:48.832][self$getEntryFields()$define] Define field ncbi.pubchem.subst.id.
biodb.DEBUG[2024-09-07 16:03:48.833][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2024-09-07 16:03:48.834][self$getEntryFields()$define] Define field uniprot.id.
biodb.DEBUG[2024-09-07 16:03:48.838][super$initialize] Initialize connector ncbi.pubchem.subst.
biodb.DEBUG[2024-09-07 16:03:48.839][super$initialize] Register connector ncbi.pubchem.subst with the request scheduler
biodb.DEBUG[2024-09-07 16:03:48.840][private$bdb$getRequestScheduler()$re ...] Register connector ncbi.pubchem.subst.
biodb.DEBUG[2024-09-07 16:03:48.841][private$addConnectorRules] Create new rule for URL "pubchem.ncbi.nlm.nih.gov" of connector "ncbi.pubchem.subst".
biodb.DEBUG[2024-09-07 16:03:48.842][self$setFrequency] t=1.000000, n=5.000000
biodb.DEBUG[2024-09-07 16:03:48.842][self$setFrequency] t=1.000000, n=5.000000
biodb.DEBUG[2024-09-07 16:03:48.843][private$addConnectorRules] Create new rule for URL "eutils.ncbi.nlm.nih.gov" of connector "ncbi.pubchem.subst".
biodb.DEBUG[2024-09-07 16:03:48.844][self$setFrequency] t=1.000000, n=5.000000
biodb.DEBUG[2024-09-07 16:03:48.845][self$setFrequency] t=1.000000, n=5.000000
biodb.DEBUG[2024-09-07 16:03:48.846][rule$addConnector] Connector "ncbi.pubchem.subst" is already listed in rule "pubchem.ncbi.nlm.nih.gov".
biodb.DEBUG[2024-09-07 16:03:48.850][biodb$getFactory()$createConn] Creating new connector ncbi.pubchem.subst for database class ncbi.pubchem.subst .
biodb.INFO [2024-09-07 16:03:48.853][biodb::testThat]
biodb.INFO [2024-09-07 16:03:48.854][biodb::testThat] Running test function  test.entry.fields  (" Entry fields have a correct value ").
biodb.INFO [2024-09-07 16:03:48.854][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-09-07 16:03:48.855][biodb::testThat]
biodb.TRACE[2024-09-07 16:03:48.857][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/bbs-3.20-bioc-longtests/meat/biodbNcbi.Rcheck/biodbNcbi/testref/entry-ncbi.pubchem.subst-3-content.xml".
biodb.DEBUG[2024-09-07 16:03:48.858][biodb$getFactory()$createEntryFromCo ...] Creating PubChem Substance entries from 1 content(s).
biodb.DEBUG[2024-09-07 16:03:48.860][biodb$getFactory()$createEntryFromCo ...] Parsing 1 PubChem Substance entries.
biodb.DEBUG[2024-09-07 16:03:48.862][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:03:48.862][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:03:48.863][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:03:48.867][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:03:48.867][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:03:48.868][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:03:48.869][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:03:48.871][ef$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:48.871][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:48.872][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:48.873][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:48.874][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:48.875][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:48.875][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:48.876][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:48.877][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:48.878][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:48.879][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:48.879][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:48.880][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:48.881][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:48.882][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:48.882][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:48.883][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.subst.id.
biodb.TRACE[2024-09-07 16:03:48.884][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.subst.id.
biodb.TRACE[2024-09-07 16:03:48.885][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:48.886][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:48.886][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.subst.id.
biodb.TRACE[2024-09-07 16:03:48.887][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.subst.id.
biodb.TRACE[2024-09-07 16:03:48.888][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:48.889][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:48.889][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:48.890][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:48.891][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:48.892][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:48.892][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.subst.id.
biodb.TRACE[2024-09-07 16:03:48.893][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.subst.id.
biodb.TRACE[2024-09-07 16:03:48.894][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:48.894][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:48.895][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:48.896][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:48.897][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:48.897][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:48.898][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:48.899][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:48.900][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:48.900][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:48.901][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:48.902][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:48.902][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:48.903][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:48.904][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:48.905][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:48.905][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:48.906][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:48.907][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:48.908][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:48.908][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:48.909][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:48.910][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:48.910][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:48.911][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:48.912][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:03:48.913][biodb$getFactory()$createEntryFromCo ...] Accession numbers: 3.
biodb.TRACE[2024-09-07 16:03:48.914][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-09-07 16:03:48.915][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-09-07 16:03:48.916][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:48.916][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:48.917][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-09-07 16:03:48.918][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-09-07 16:03:48.919][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:48.919][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:48.920][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-09-07 16:03:48.921][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-09-07 16:03:48.921][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:48.922][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:48.923][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-09-07 16:03:48.924][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-09-07 16:03:48.924][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:48.925][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:48.926][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-09-07 16:03:48.926][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-09-07 16:03:48.927][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:48.928][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:48.929][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-09-07 16:03:48.929][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-09-07 16:03:48.930][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:48.931][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:48.931][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-09-07 16:03:48.932][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-09-07 16:03:48.933][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:48.934][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:48.935][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:48.936][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:48.936][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:48.937][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:48.941][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.subst.id.
biodb.TRACE[2024-09-07 16:03:48.942][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.subst.id.
biodb.TRACE[2024-09-07 16:03:48.943][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:48.944][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:48.948][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:48.949][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:48.950][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:48.950][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:48.951][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:48.952][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:48.952][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:48.953][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:48.954][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:48.955][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:48.955][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:48.956][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:48.958][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:48.959][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:48.959][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:48.960][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:48.961][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:48.961][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:48.962][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:48.963][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:48.963][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:48.964][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:48.965][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:48.965][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:48.966][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.subst.id.
biodb.TRACE[2024-09-07 16:03:48.967][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.subst.id.
biodb.TRACE[2024-09-07 16:03:48.968][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:48.968][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:48.969][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.subst.id.
biodb.TRACE[2024-09-07 16:03:48.970][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.subst.id.
biodb.TRACE[2024-09-07 16:03:48.971][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:48.971][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:48.972][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.subst.id.
biodb.TRACE[2024-09-07 16:03:48.973][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.subst.id.
biodb.TRACE[2024-09-07 16:03:48.973][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:48.974][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:48.980][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:48.980][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:48.981][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:48.982][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:48.983][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:48.983][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:48.984][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:48.985][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:48.985][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:48.986][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:48.987][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:48.988][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:48.988][ef$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:48.989][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:48.990][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:48.991][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:48.991][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:48.992][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:48.993][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:48.993][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:49.000][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:49.001][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:49.002][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:49.003][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:49.003][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:49.004][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:49.005][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:49.005][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:49.006][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:49.007][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:49.008][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:49.008][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:49.009][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:49.010][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:49.010][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:49.011][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:49.012][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:49.012][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:49.013][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:49.014][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:49.021][ef$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:49.021][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:49.022][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:49.023][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:49.027][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:49.027][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:49.028][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:49.029][ef$get] fields variable is a list.
biodb.INFO [2024-09-07 16:03:49.035][biodb::testThat]
biodb.INFO [2024-09-07 16:03:49.036][biodb::testThat] Running test function  test.rt.unit  (" RT unit is defined when there is an RT value. ").
biodb.INFO [2024-09-07 16:03:49.036][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-09-07 16:03:49.037][biodb::testThat]
biodb.DEBUG[2024-09-07 16:03:49.039][private$loadEntries] Creating entries from ids [1]: "3".
biodb.DEBUG[2024-09-07 16:03:49.040][conn$getEntryContent] Get PubChem Substance entry content(s) for 1 id(s)...
biodb.TRACE[2024-09-07 16:03:49.041][cch$loadFileContent] Trying to load 1 files from cache: [1]: "3".
biodb.TRACE[2024-09-07 16:03:49.043][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-09-07 16:03:49.045][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.subst-e80afa72f6aa7425ca0c72f99f7b9d75/3.xml".
biodb.DEBUG[2024-09-07 16:03:49.046][conn$getEntryContent] 1 PubChem Substance entry content(s) loaded from cache.
biodb.DEBUG[2024-09-07 16:03:49.047][self$createEntryFromContent] Creating PubChem Substance entries from 1 content(s).
biodb.DEBUG[2024-09-07 16:03:49.054][self$createEntryFromContent] Parsing 1 PubChem Substance entries.
biodb.DEBUG[2024-09-07 16:03:49.056][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:03:49.057][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:03:49.058][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:03:49.063][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:03:49.063][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:03:49.064][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:03:49.064][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:03:49.066][ef$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:49.067][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:49.068][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:49.068][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:49.069][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:49.070][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:49.071][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:49.072][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:49.072][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:49.073][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:49.074][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:49.075][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:49.075][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:49.076][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:03:49.077][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:49.078][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:49.078][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.subst.id.
biodb.TRACE[2024-09-07 16:03:49.079][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.subst.id.
biodb.TRACE[2024-09-07 16:03:49.080][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:49.081][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:49.081][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.subst.id.
biodb.TRACE[2024-09-07 16:03:49.082][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.subst.id.
biodb.TRACE[2024-09-07 16:03:49.083][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:49.084][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:49.084][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:49.085][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:49.086][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:49.086][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:49.087][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.subst.id.
biodb.TRACE[2024-09-07 16:03:49.088][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.subst.id.
biodb.TRACE[2024-09-07 16:03:49.089][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:49.089][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:49.090][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:49.091][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:49.092][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:49.092][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:49.093][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:49.094][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:49.094][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:49.095][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:49.096][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:49.096][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:49.097][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:49.098][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:49.099][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:49.099][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:49.100][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:49.101][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:49.101][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:49.102][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:49.103][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:49.104][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:49.104][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:49.105][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:49.106][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:49.106][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:03:49.107][self$createEntryFromContent] Accession numbers: 3.
biodb.TRACE[2024-09-07 16:03:49.108][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2024-09-07 16:03:49.109][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2024-09-07 16:03:49.109][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:49.110][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:49.111][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2024-09-07 16:03:49.111][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2024-09-07 16:03:49.112][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:49.113][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:49.113][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2024-09-07 16:03:49.114][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2024-09-07 16:03:49.115][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:49.116][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2024-09-07 16:03:49.123][biodb::testThat]
biodb.INFO [2024-09-07 16:03:49.123][biodb::testThat] Running test function  test.searchForEntries  (" We can search for an entry by searchable field ").
biodb.INFO [2024-09-07 16:03:49.124][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-09-07 16:03:49.125][biodb::testThat]
biodb.INFO [2024-09-07 16:03:49.130][biodb::testThat]
biodb.INFO [2024-09-07 16:03:49.130][biodb::testThat] Running test function  test.searchByName  (" We can search for an entry by name. ").
biodb.INFO [2024-09-07 16:03:49.131][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-09-07 16:03:49.132][biodb::testThat]
biodb.WARN [2024-09-07 16:03:49.134][self$searchForEntries] This database is not searchable by field "name".
biodb.WARN [2024-09-07 16:03:49.137][self$searchForEntries] This database is not searchable by field "name".
biodb.INFO [2024-09-07 16:03:49.143][biodb::testThat]
biodb.INFO [2024-09-07 16:03:49.144][biodb::testThat] Running test function  testEntryLoading  (" We can load an entry from the database. ").
biodb.INFO [2024-09-07 16:03:49.145][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-09-07 16:03:49.145][biodb::testThat]
biodb.TRACE[2024-09-07 16:03:49.153][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-09-07 16:03:49.153][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-09-07 16:03:49.154][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:49.155][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:49.155][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-09-07 16:03:49.156][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-09-07 16:03:49.157][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:49.157][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:49.158][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-09-07 16:03:49.159][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-09-07 16:03:49.160][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:49.160][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:49.161][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-09-07 16:03:49.162][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-09-07 16:03:49.163][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:49.164][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:49.164][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-09-07 16:03:49.165][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-09-07 16:03:49.166][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:49.166][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:49.167][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-09-07 16:03:49.168][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-09-07 16:03:49.169][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:49.169][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:49.170][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-09-07 16:03:49.171][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-09-07 16:03:49.172][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:49.172][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:49.174][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-09-07 16:03:49.175][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-09-07 16:03:49.175][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:49.176][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:49.177][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-09-07 16:03:49.178][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-09-07 16:03:49.178][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:49.179][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:49.180][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-09-07 16:03:49.180][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-09-07 16:03:49.181][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:49.182][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:49.182][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-09-07 16:03:49.183][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-09-07 16:03:49.184][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:49.185][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:49.185][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-09-07 16:03:49.186][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-09-07 16:03:49.187][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:49.187][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:49.188][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-09-07 16:03:49.189][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-09-07 16:03:49.190][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:49.190][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:49.191][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-09-07 16:03:49.192][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-09-07 16:03:49.192][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:49.193][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2024-09-07 16:03:49.198][biodb::testThat]
biodb.INFO [2024-09-07 16:03:49.199][biodb::testThat] Running test function  test.entry.page.url  (" We can get a URL pointing to the entry page. ").
biodb.INFO [2024-09-07 16:03:49.200][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-09-07 16:03:49.201][biodb::testThat]
biodb.INFO [2024-09-07 16:03:49.207][biodb::testThat]
biodb.INFO [2024-09-07 16:03:49.208][biodb::testThat] Running test function  test.entry.image.url  (" We can get a URL pointing to the entry image. ").
biodb.INFO [2024-09-07 16:03:49.208][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-09-07 16:03:49.209][biodb::testThat]
biodb.INFO [2024-09-07 16:03:49.215][biodb::testThat]
biodb.INFO [2024-09-07 16:03:49.216][biodb::testThat] Running test function  test.entry.page.url.download  (" The entry page URL can be downloaded. ").
biodb.INFO [2024-09-07 16:03:49.216][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-09-07 16:03:49.217][biodb::testThat]
biodb.DEBUG[2024-09-07 16:03:49.220][function(conn, opt)] Trying to download "https://pubchem.ncbi.nlm.nih.gov/substance/3".
biodb.DEBUG[2024-09-07 16:03:49.315][getUrlContent] Use RCurl for downloading content of URL https://pubchem.ncbi.nlm.nih.gov/substance/3.
biodb.INFO [2024-09-07 16:03:49.407][biodb::testThat]
biodb.INFO [2024-09-07 16:03:49.408][biodb::testThat] Running test function  test.entry.image.url.download  (" The entry image URL can be downloaded. ").
biodb.INFO [2024-09-07 16:03:49.409][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-09-07 16:03:49.410][biodb::testThat]
biodb.DEBUG[2024-09-07 16:03:49.515][getUrlContent] Use RCurl for downloading content of URL https://pubchem.ncbi.nlm.nih.gov/image/imgsrv.fcgi?sid=3&t=l.
biodb.INFO [2024-09-07 16:03:49.624][biodb$terminate] Closing BiodbMain instance...
biodb.DEBUG[2024-09-07 16:03:49.625][private$conn[[conn]]$.__enclos_env__ ...] Unregister connector ncbi.pubchem.subst from the request scheduler
biodb.INFO [2024-09-07 16:03:49.626][self$deleteConn] Connector "ncbi.pubchem.subst" deleted.
biodb.DEBUG[2024-09-07 16:03:49.626][notifyObservers] Notify observers for terminate.
biodb.DEBUG[2024-09-07 16:03:49.627][FUN] Trying to call function terminate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:03:49.628][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:03:49.628][FUN] Trying to call function terminate on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:03:49.629][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:03:49.629][FUN] Trying to call function terminate on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:03:49.630][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
[ FAIL 0 | WARN 1 | SKIP 0 | PASS 1031 ]

[ FAIL 0 | WARN 1 | SKIP 0 | PASS 1031 ]
> 
> proc.time()
   user  system elapsed 
 33.856   1.535  73.396

'R CMD check' output

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###
### Running command:
###
###   /Library/Frameworks/R.framework/Resources/bin/R CMD check --test-dir=longtests --no-stop-on-test-error --no-codoc --no-examples --no-manual --ignore-vignettes --check-subdirs=no biodbNcbi_1.9.0.tar.gz
###
##############################################################################
##############################################################################


* using log directory ‘/Users/biocbuild/bbs-3.20-bioc-longtests/meat/biodbNcbi.Rcheck’
* using R version 4.4.1 (2024-06-14)
* using platform: x86_64-apple-darwin20
* R was compiled by
    Apple clang version 14.0.0 (clang-1400.0.29.202)
    GNU Fortran (GCC) 12.2.0
* running under: macOS Monterey 12.7.1
* using session charset: UTF-8
* using options ‘--no-codoc --no-examples --no-manual --ignore-vignettes --no-stop-on-test-error’
* checking for file ‘biodbNcbi/DESCRIPTION’ ... OK
* this is package ‘biodbNcbi’ version ‘1.9.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘biodbNcbi’ can be installed ... OK
* checking installed package size ... NOTE
  installed size is  8.1Mb
  sub-directories of 1Mb or more:
    testref   7.6Mb
* checking package directory ... OK
* checking DESCRIPTION meta-information ... NOTE
Malformed Title field: should not end in a period.
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... SKIPPED
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in ‘vignettes’ ... SKIPPED
* checking examples ... SKIPPED
* checking for unstated dependencies in ‘longtests’ ... WARNING
'library' or 'require' call not declared from: ‘biodbNci’
* checking tests in ‘longtests’ ...
  Running ‘testthat.R’
 OK
* DONE

Status: 1 WARNING, 2 NOTEs
See
  ‘/Users/biocbuild/bbs-3.20-bioc-longtests/meat/biodbNcbi.Rcheck/00check.log’
for details.

Installation output

biodbNcbi.Rcheck/00install.out

* installing *source* package ‘biodbNcbi’ ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (biodbNcbi)