BioC experimental data: CHECK report for facopy.annot on perceval

Package: facopy.annot

Version: 0.103.0

Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --no-vignettes --timings facopy.annot_0.103.0.tar.gz

StartedAt: 2015-08-22 09:12:43 -0700 (Sat, 22 Aug 2015)

EndedAt: 2015-08-22 09:13:30 -0700 (Sat, 22 Aug 2015)

EllapsedTime: 47.0 seconds

RetCode: 0

Status:  OK

CheckDir: facopy.annot.Rcheck

Warnings: 0

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### Running command:
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###   /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --no-vignettes --timings facopy.annot_0.103.0.tar.gz
###
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* using log directory ‘/Users/biocbuild/bbs-3.2-data-experiment/meat/facopy.annot.Rcheck’
* using R version 3.2.2 Patched (2015-08-14 r69078)
* using platform: x86_64-apple-darwin10.8.0 (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘facopy.annot/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘facopy.annot’ version ‘0.103.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘facopy.annot’ can be installed ... [3s/4s] OK
* checking installed package size ... NOTE
  installed size is  6.2Mb
  sub-directories of 1Mb or more:
    data   5.9Mb
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking examples ... [5s/6s] OK
* checking PDF version of manual ... OK
* DONE

Status: 1 NOTE
See
  ‘/Users/biocbuild/bbs-3.2-data-experiment/meat/facopy.annot.Rcheck/00check.log’
for details.

* installing *source* package ‘facopy.annot’ ...
** data
** inst
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded
* DONE (facopy.annot)

name	user	system	elapsed
hg18_armLimits	0.029	0.005	0.033
hg18_db_gsk_bladder	0.017	0.001	0.018
hg18_db_gsk_blood	0.022	0.002	0.025
hg18_db_gsk_bone	0.013	0.001	0.016
hg18_db_gsk_brain	0.020	0.001	0.024
hg18_db_gsk_breast	0.022	0.000	0.028
hg18_db_gsk_cervix	0.016	0.001	0.021
hg18_db_gsk_cns	0.022	0.001	0.033
hg18_db_gsk_colon	0.020	0.001	0.020
hg18_db_gsk_connective_tissue	0.015	0.001	0.016
hg18_db_gsk_esophagus	0.018	0.001	0.019
hg18_db_gsk_eye	0.005	0.001	0.006
hg18_db_gsk_kidney	0.017	0.001	0.021
hg18_db_gsk_liver	0.021	0.001	0.024
hg18_db_gsk_lung	0.031	0.001	0.062
hg18_db_gsk_muscle	0.017	0.001	0.017
hg18_db_gsk_ovary	0.019	0.000	0.019
hg18_db_gsk_pancreas	0.017	0.001	0.017
hg18_db_gsk_pharynx	0.013	0.001	0.013
hg18_db_gsk_placenta	0.016	0.000	0.016
hg18_db_gsk_prostate	0.018	0.000	0.029
hg18_db_gsk_rectum	0.014	0.001	0.016
hg18_db_gsk_sarcoma	0.011	0.001	0.011
hg18_db_gsk_stomach	0.022	0.000	0.024
hg18_db_gsk_synovium	0.006	0.001	0.007
hg18_db_gsk_thyroid	0.019	0.001	0.019
hg18_db_gsk_uterus	0.019	0.001	0.019
hg18_db_nci60	0.025	0.001	0.025
hg18_db_tcga_blca	0.028	0.001	0.031
hg18_db_tcga_brca	0.028	0.001	0.042
hg18_db_tcga_cesc	0.065	0.001	0.091
hg18_db_tcga_coad	0.025	0.000	0.029
hg18_db_tcga_gbm	0.027	0.000	0.037
hg18_db_tcga_hnsc	0.026	0.001	0.027
hg18_db_tcga_kirc	0.027	0.001	0.027
hg18_db_tcga_kirp	0.025	0.001	0.025
hg18_db_tcga_lgg	0.025	0.001	0.026
hg18_db_tcga_lihc	0.027	0.001	0.046
hg18_db_tcga_luad	0.028	0.000	0.033
hg18_db_tcga_lusc	0.028	0.000	0.041
hg18_db_tcga_ov	0.027	0.000	0.028
hg18_db_tcga_prad	0.027	0.000	0.032
hg18_db_tcga_read	0.026	0.000	0.045
hg18_db_tcga_stad	0.026	0.000	0.029
hg18_db_tcga_thca	0.023	0.000	0.024
hg18_db_tcga_ucec	0.025	0.001	0.027
hg18_feature_cancergene	0.010	0.001	0.010
hg18_feature_ensembl	0.359	0.006	0.506
hg18_feature_lincRNA	0.025	0.002	0.027
hg18_feature_mirnas	0.012	0.001	0.023
hg18_feature_oncogene	0.007	0.000	0.007
hg18_feature_tumorsupressor	0.006	0.001	0.010
hg19_armLimits	0.003	0.000	0.004
hg19_db_gsk_bladder	0.018	0.001	0.033
hg19_db_gsk_blood	0.031	0.002	0.039
hg19_db_gsk_bone	0.015	0.001	0.016
hg19_db_gsk_brain	0.019	0.001	0.019
hg19_db_gsk_breast	0.028	0.002	0.030
hg19_db_gsk_cervix	0.018	0.001	0.020
hg19_db_gsk_cns	0.021	0.001	0.023
hg19_db_gsk_colon	0.026	0.001	0.028
hg19_db_gsk_connective_tissue	0.017	0.000	0.017
hg19_db_gsk_esophagus	0.016	0.000	0.017
hg19_db_gsk_eye	0.005	0.001	0.005
hg19_db_gsk_kidney	0.016	0.001	0.017
hg19_db_gsk_liver	0.024	0.001	0.026
hg19_db_gsk_lung	0.025	0.001	0.027
hg19_db_gsk_muscle	0.015	0.000	0.014
hg19_db_gsk_ovary	0.018	0.000	0.034
hg19_db_gsk_pancreas	0.018	0.001	0.019
hg19_db_gsk_pharynx	0.015	0.001	0.017
hg19_db_gsk_placenta	0.022	0.001	0.023
hg19_db_gsk_prostate	0.019	0.001	0.031
hg19_db_gsk_rectum	0.014	0.001	0.014
hg19_db_gsk_sarcoma	0.011	0.001	0.011
hg19_db_gsk_stomach	0.021	0.001	0.024
hg19_db_gsk_synovium	0.004	0.001	0.004
hg19_db_gsk_thyroid	0.017	0.000	0.020
hg19_db_gsk_uterus	0.017	0.000	0.018
hg19_db_nci60	0.037	0.001	0.047
hg19_db_tcga_blca	0.031	0.001	0.033
hg19_db_tcga_brca	0.027	0.001	0.027
hg19_db_tcga_cesc	0.032	0.001	0.055
hg19_db_tcga_coad	0.039	0.001	0.052
hg19_db_tcga_gbm	0.027	0.000	0.027
hg19_db_tcga_hnsc	0.026	0.000	0.026
hg19_db_tcga_kirc	0.030	0.001	0.036
hg19_db_tcga_kirp	0.027	0.001	0.042
hg19_db_tcga_lgg	0.030	0.000	0.032
hg19_db_tcga_lihc	0.031	0.001	0.034
hg19_db_tcga_luad	0.028	0.001	0.042
hg19_db_tcga_lusc	0.032	0.001	0.036
hg19_db_tcga_ov	0.026	0.000	0.038
hg19_db_tcga_prad	0.029	0.000	0.032
hg19_db_tcga_read	0.026	0.000	0.027
hg19_db_tcga_stad	0.030	0.000	0.031
hg19_db_tcga_thca	0.022	0.000	0.023
hg19_db_tcga_ucec	0.030	0.000	0.034
hg19_feature_cancergene	0.010	0.000	0.013
hg19_feature_ensembl	0.594	0.010	0.706
hg19_feature_lincRNA	0.027	0.001	0.035
hg19_feature_mirnas	0.023	0.001	0.024
hg19_feature_oncogene	0.006	0.000	0.007
hg19_feature_tumorsupressor	0.007	0.000	0.008
mm8_armLimits	0.003	0.000	0.006
mm8_feature_ensembl	0.860	0.011	1.026
mm8_feature_mirnas	0.016	0.000	0.020