BioC 3.2: CHECK report for MethylMix on moscato1

Package: MethylMix

Version: 1.4.0

Command: rm -rf MethylMix.buildbin-libdir MethylMix.Rcheck && mkdir MethylMix.buildbin-libdir MethylMix.Rcheck && D:\biocbld\bbs-3.2-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=MethylMix.buildbin-libdir MethylMix_1.4.0.tar.gz >MethylMix.Rcheck\00install.out 2>&1 && cp MethylMix.Rcheck\00install.out MethylMix-install.out && D:\biocbld\bbs-3.2-bioc\R\bin\R.exe CMD check --library=MethylMix.buildbin-libdir --install="check:MethylMix-install.out" --force-multiarch --no-vignettes --timings MethylMix_1.4.0.tar.gz

StartedAt: 2016-04-23 04:34:45 -0700 (Sat, 23 Apr 2016)

EndedAt: 2016-04-23 04:39:27 -0700 (Sat, 23 Apr 2016)

EllapsedTime: 281.9 seconds

RetCode: 0

Status:  OK

CheckDir: MethylMix.Rcheck

Warnings: 0

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### Running command:
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###   rm -rf MethylMix.buildbin-libdir MethylMix.Rcheck && mkdir MethylMix.buildbin-libdir MethylMix.Rcheck && D:\biocbld\bbs-3.2-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=MethylMix.buildbin-libdir MethylMix_1.4.0.tar.gz >MethylMix.Rcheck\00install.out 2>&1 && cp MethylMix.Rcheck\00install.out MethylMix-install.out  && D:\biocbld\bbs-3.2-bioc\R\bin\R.exe CMD check --library=MethylMix.buildbin-libdir --install="check:MethylMix-install.out" --force-multiarch --no-vignettes --timings MethylMix_1.4.0.tar.gz
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* using log directory 'D:/biocbld/bbs-3.2-bioc/meat/MethylMix.Rcheck'
* using R version 3.2.4 (2016-03-10)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'MethylMix/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'MethylMix' version '1.4.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'MethylMix' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... NOTE
Malformed Title field: should not end in a period.
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... [119s] OK
Examples with CPU or elapsed time > 5s
                     user system elapsed
MethylMix           78.10   0.01   78.11
MethylMix_PlotModel 39.84   0.02   39.87
** running examples for arch 'x64' ... [118s] OK
Examples with CPU or elapsed time > 5s
                     user system elapsed
MethylMix           76.55   0.00   76.55
MethylMix_PlotModel 40.10   0.02   40.12
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 1 NOTE
See
  'D:/biocbld/bbs-3.2-bioc/meat/MethylMix.Rcheck/00check.log'
for details.

install for i386

* installing *source* package 'MethylMix' ...
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded

install for x64

* installing *source* package 'MethylMix' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'MethylMix' as MethylMix_1.4.0.zip
* DONE (MethylMix)

name	user	system	elapsed
MethylMix	78.10	0.01	78.11
MethylMix_PlotModel	39.84	0.02	39.87

name	user	system	elapsed
MethylMix	76.55	0.00	76.55
MethylMix_PlotModel	40.10	0.02	40.12