synapter 1.12.0
Laurent Gatto and Sebastian Gibb
| Snapshot Date: 2015-10-26 19:24:07 -0400 (Mon, 26 Oct 2015) | | URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_3_2/madman/Rpacks/synapter | | Last Changed Rev: 109589 / Revision: 109947 | | Last Changed Date: 2015-10-13 15:36:05 -0400 (Tue, 13 Oct 2015) |
| linux1.bioconductor.org | Linux (Ubuntu 14.04.2 LTS) / x86_64 | OK | OK | OK | |  |
| windows1.bioconductor.org | Windows Server 2012 R2 Enterprise SP1 (64-bit) / x64 | OK | OK | [ OK ] | OK | |
| perceval | Mac OS X Snow Leopard (10.6.8) / x86_64 | OK | OK | OK | OK | |
| oaxaca | Mac OS X Mavericks (10.9.5) / x86_64 | OK | OK | OK | OK | |
##############################################################################
##############################################################################
###
### Running command:
###
### rm -rf synapter.buildbin-libdir synapter.Rcheck && mkdir synapter.buildbin-libdir synapter.Rcheck && C:\biocbld\bbs-3.2-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=synapter.buildbin-libdir synapter_1.12.0.tar.gz >synapter.Rcheck\00install.out 2>&1 && cp synapter.Rcheck\00install.out synapter-install.out && C:\biocbld\bbs-3.2-bioc\R\bin\R.exe CMD check --library=synapter.buildbin-libdir --install="check:synapter-install.out" --force-multiarch --no-vignettes --timings synapter_1.12.0.tar.gz
###
##############################################################################
##############################################################################
* using log directory 'C:/biocbld/bbs-3.2-bioc/meat/synapter.Rcheck'
* using R version 3.2.2 Patched (2015-08-16 r69094)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'synapter/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'synapter' version '1.12.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'synapter' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
.GUI: no visible global function definition for 'tclVar'
.GUI: no visible global function definition for 'tktoplevel'
.GUI: no visible global function definition for 'tkbind'
.GUI : <anonymous>: no visible global function definition for
'tclvalue<-'
.GUI: no visible global function definition for 'tkwm.title'
.GUI: no visible global function definition for 'tkframe'
.GUI: no visible global function definition for 'tkpack'
.GUI: no visible global function definition for 'tk2notebook'
.GUI: no visible global function definition for 'tk2notetab'
.GUI: no visible global function definition for 'tk2button'
.GUI : <anonymous>: no visible global function definition for
'tclvalue'
.GUI : <anonymous>: no visible global function definition for 'tcl'
.GUI : <anonymous>: no visible global function definition for
'tk_choose.files'
.GUI : <anonymous>: no visible global function definition for
'tkinsert'
.GUI : <anonymous>: no visible global function definition for
'tk_choose.dir'
.GUI : <anonymous>: no visible global function definition for
'tkdelete'
.GUI: no visible global function definition for 'tkscrollbar'
.GUI : <anonymous>: no visible global function definition for 'tkxview'
.GUI : <anonymous>: no visible global function definition for 'tkyview'
.GUI: no visible global function definition for 'tkwidget'
.GUI : <anonymous>: no visible global function definition for 'tkset'
.GUI: no visible global function definition for 'tkgrid'
.GUI: no visible global function definition for 'tkgrid.configure'
.GUI: no visible global function definition for
'tkgrid.columnconfigure'
.GUI: no visible global function definition for 'tkgrid.rowconfigure'
.GUI: no visible global function definition for 'tkinsert'
.GUI: no visible global function definition for 'tkcheckbutton'
.GUI: no visible global function definition for 'tkconfigure'
.GUI: no visible global function definition for 'tklabel'
.GUI: no visible global function definition for 'tkentry'
.GUI : <anonymous>: no visible global function definition for
'tkdestroy'
.GUI: no visible global function definition for 'tkfocus'
.GUI: no visible global function definition for 'tkwait.variable'
synergise: no visible global function definition for 'tk_choose.dir'
plotPepScores,Synapter : .local: no visible binding for global variable
'protein.dataBaseType'
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... [16s] OK
Examples with CPU or elapsed time > 5s
user system elapsed
synergise 4.33 0.91 5.25
Synapter 4.89 0.12 5.01
** running examples for arch 'x64' ... [17s] OK
Examples with CPU or elapsed time > 5s
user system elapsed
Synapter 5.37 0.16 5.53
synergise 4.36 0.75 5.14
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: 1 NOTE
See
'C:/biocbld/bbs-3.2-bioc/meat/synapter.Rcheck/00check.log'
for details.
install for i386
* installing *source* package 'synapter' ...
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
install for x64
* installing *source* package 'synapter' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'synapter' as synapter_1.12.0.zip
* DONE (synapter)