BioC 3.2: CHECK report for UNDO on linux1.bioconductor.org

Package: UNDO

Version: 1.12.0

Command: /home/biocbuild/bbs-3.2-bioc/R/bin/R CMD check --no-vignettes --timings UNDO_1.12.0.tar.gz

StartedAt: 2015-10-27 08:56:00 -0400 (Tue, 27 Oct 2015)

EndedAt: 2015-10-27 08:56:29 -0400 (Tue, 27 Oct 2015)

EllapsedTime: 28.4 seconds

RetCode: 0

Status:  OK

CheckDir: UNDO.Rcheck

Warnings: 0

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### Running command:
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###   /home/biocbuild/bbs-3.2-bioc/R/bin/R CMD check --no-vignettes --timings UNDO_1.12.0.tar.gz
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* using log directory ‘/home/biocbuild/bbs-3.2-bioc/meat/UNDO.Rcheck’
* using R version 3.2.2 (2015-08-14)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘UNDO/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘UNDO’ version ‘1.12.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘UNDO’ can be installed ... [2s/2s] OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... [4s/4s] OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: OK

* installing *source* package ‘UNDO’ ...
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (UNDO)

name	user	system	elapsed
BiologicalMixMCF7HS27	0.127	0.004	0.131
NumericalMixMCF7HS27	0.122	0.004	0.126
NumericalMixingMatrix	0.004	0.000	0.004
PureMCF7HS27	0.143	0.008	0.151
UNDO-package	1.539	0.008	1.554
calc_E1	0.001	0.000	0.001
dimension_reduction	0.002	0.000	0.002
gene_expression_input	0.001	0.000	0.001
marker_gene_selection	0.100	0.000	0.101
mixing_matrix_computation	0.327	0.000	0.327
two_source_deconv	0.992	0.004	0.996