MBCB 1.24.0
Jeff Allen
| Snapshot Date: 2015-10-26 19:24:07 -0400 (Mon, 26 Oct 2015) | | URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_3_2/madman/Rpacks/MBCB | | Last Changed Rev: 109589 / Revision: 109947 | | Last Changed Date: 2015-10-13 15:36:05 -0400 (Tue, 13 Oct 2015) |
| linux1.bioconductor.org | Linux (Ubuntu 14.04.2 LTS) / x86_64 | NotNeeded | OK | OK | |  |
| windows1.bioconductor.org | Windows Server 2012 R2 Enterprise SP1 (64-bit) / x64 | NotNeeded | OK | [ OK ] | OK | |
| perceval | Mac OS X Snow Leopard (10.6.8) / x86_64 | NotNeeded | OK | OK | OK | |
| oaxaca | Mac OS X Mavericks (10.9.5) / x86_64 | NotNeeded | OK | OK | OK | |
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### Running command:
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### rm -rf MBCB.buildbin-libdir MBCB.Rcheck && mkdir MBCB.buildbin-libdir MBCB.Rcheck && C:\biocbld\bbs-3.2-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=MBCB.buildbin-libdir MBCB_1.24.0.tar.gz >MBCB.Rcheck\00install.out 2>&1 && cp MBCB.Rcheck\00install.out MBCB-install.out && C:\biocbld\bbs-3.2-bioc\R\bin\R.exe CMD check --library=MBCB.buildbin-libdir --install="check:MBCB-install.out" --force-multiarch --no-vignettes --timings MBCB_1.24.0.tar.gz
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* using log directory 'C:/biocbld/bbs-3.2-bioc/meat/MBCB.Rcheck'
* using R version 3.2.2 Patched (2015-08-16 r69094)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'MBCB/DESCRIPTION' ... OK
* this is package 'MBCB' version '1.24.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'MBCB' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* checking dependencies in R code ... NOTE
Packages in Depends field not imported from:
'tcltk' 'tcltk2'
These packages need to be imported from (in the NAMESPACE file)
for when this namespace is loaded but not attached.
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
bg.mcmc: no visible binding for global variable 'obsbead'
bg.mcmc: no visible binding for global variable 'obsnc'
esttruesig: no visible binding for global variable 'obsbead'
esttruesig: no visible binding for global variable 'truesignal'
liksig: no visible binding for global variable 'obsbead'
liksig.all: no visible binding for global variable 'obsbead'
liksig.all: no visible binding for global variable 'obsnc'
liksig.gamnoise: no visible binding for global variable 'nbead'
liksig.gamnoise: no visible binding for global variable 'sortedObsbead'
liksigall.gamnoise: no visible binding for global variable 'obsnc'
mbcb.correct: no visible binding for '<<-' assignment to 'trialNames'
mbcb.correct: no visible binding for '<<-' assignment to 'n.array'
mbcb.correct: no visible binding for '<<-' assignment to 'truesignal'
mbcb.correct: no visible binding for '<<-' assignment to 'truenoise'
mbcb.correct: no visible binding for '<<-' assignment to 'obsbead'
mbcb.correct: no visible binding for '<<-' assignment to 'obsnc'
mbcb.correct: no visible binding for '<<-' assignment to 'nbead'
mbcb.correct: no visible binding for global variable 'n.array'
mbcb.correct: no visible global function definition for
'setTkProgressBar'
mbcb.correct: no visible binding for global variable 'mbcbPB'
mbcb.correct: no visible binding for global variable 'obsbead'
mbcb.correct: no visible binding for '<<-' assignment to 'nnc'
mbcb.correct: no visible binding for '<<-' assignment to
'sortedObsbead'
mbcb.correct: no visible binding for global variable 'obsnc'
mbcb.correct: no visible binding for global variable 'nbead'
mbcb.correct: no visible binding for global variable 'nnc'
mbcb.correct: no visible binding for global variable 'sortedObsbead'
mbcb.gui: no visible global function definition for 'tclVar'
mbcb.gui : import.sig: no visible global function definition for
'tclvalue'
mbcb.gui : import.sig: no visible global function definition for
'tkgetOpenFile'
mbcb.gui : import.sig: no visible global function definition for
'tkconfigure'
mbcb.gui : import.sig: no visible global function definition for
'tclVar'
mbcb.gui : import.negCon: no visible global function definition for
'tclvalue'
mbcb.gui : import.negCon: no visible global function definition for
'tkgetOpenFile'
mbcb.gui : import.negCon: no visible global function definition for
'tkconfigure'
mbcb.gui : import.negCon: no visible global function definition for
'tclVar'
mbcb.gui : actions.norm: no visible global function definition for
'tkmessageBox'
mbcb.gui : actions.norm: no visible global function definition for
'tk2notetab'
mbcb.gui : actions.norm: no visible binding for global variable
'main.nb'
mbcb.gui : actions.norm: no visible global function definition for
'tk2notetab.select'
mbcb.gui : actions.norm: no visible global function definition for
'tclVar'
mbcb.gui : actions.norm: no visible global function definition for
'tkframe'
mbcb.gui : actions.norm: no visible global function definition for
'tkcheckbutton'
mbcb.gui : actions.norm: no visible global function definition for
'tkentry'
mbcb.gui : actions.norm: no visible global function definition for
'tkbutton'
mbcb.gui : actions.norm: no visible global function definition for
'tkconfigure'
mbcb.gui : actions.norm: no visible global function definition for
'tkgrid'
mbcb.gui : actions.norm: no visible global function definition for
'tklabel'
mbcb.gui : actions.norm : initiate: no visible global function
definition for 'tclvalue'
mbcb.gui : actions.norm : initiate: no visible global function
definition for 'tkmessageBox'
mbcb.gui : actions.norm : updateChecks: no visible global function
definition for 'tclvalue'
mbcb.gui : actions.norm : updateChecks: no visible global function
definition for 'tkconfigure'
mbcb.gui : normalizeData: no visible global function definition for
'tk2notetab'
mbcb.gui : normalizeData: no visible binding for global variable
'main.nb'
mbcb.gui : normalizeData: no visible global function definition for
'tk2notetab.select'
mbcb.gui : normalizeData: no visible global function definition for
'tclVar'
mbcb.gui : normalizeData: no visible global function definition for
'tkframe'
mbcb.gui : normalizeData: no visible global function definition for
'tkradiobutton'
mbcb.gui : normalizeData: no visible global function definition for
'tkbutton'
mbcb.gui : normalizeData : <anonymous>: no visible global function
definition for 'tclvalue'
mbcb.gui : normalizeData: no visible global function definition for
'tkgrid'
mbcb.gui : normalizeData: no visible global function definition for
'tklabel'
mbcb.gui : exportData: no visible global function definition for
'tclVar'
mbcb.gui : exportData: no visible global function definition for
'tk2notetab'
mbcb.gui : exportData: no visible binding for global variable 'main.nb'
mbcb.gui : exportData: no visible global function definition for
'tk2notetab.select'
mbcb.gui : exportData: no visible global function definition for
'tkentry'
mbcb.gui : exportData: no visible global function definition for
'tkbutton'
mbcb.gui : exportData : <anonymous>: no visible binding for global
variable 'outFile'
mbcb.gui : exportData : setOut: no visible binding for '<<-' assignment
to 'outFile'
mbcb.gui : exportData : setOut: no visible global function definition
for 'tclvalue'
mbcb.gui : exportData : setOut: no visible global function definition
for 'tkgetSaveFile'
mbcb.gui : exportData : setOut: no visible binding for global variable
'outFile'
mbcb.gui : exportData : setOut: no visible global function definition
for 'tkconfigure'
mbcb.gui : exportData : setOut: no visible global function definition
for 'tclVar'
mbcb.gui : exportData : setDetOut: no visible global function
definition for 'tclvalue'
mbcb.gui : exportData : setDetOut: no visible global function
definition for 'tkgetSaveFile'
mbcb.gui : exportData : setDetOut: no visible global function
definition for 'tkconfigure'
mbcb.gui : exportData : setDetOut: no visible global function
definition for 'tclVar'
mbcb.gui : exportData: no visible global function definition for
'tkgrid'
mbcb.gui : exportData: no visible global function definition for
'tklabel'
mbcb.gui : exportData : eval: no visible global function definition for
'tkmessageBox'
mbcb.gui : exportData : eval: no visible binding for '<<-' assignment
to 'mbcbPB'
mbcb.gui : exportData : eval: no visible global function definition for
'tkProgressBar'
mbcb.gui : exportData : eval: no visible global function definition for
'tkconfigure'
mbcb.gui : exportData : eval: no visible global function definition for
'tclvalue'
mbcb.gui : exportData : eval: no visible global function definition for
'tkdestroy'
mbcb.gui : help.about: no visible global function definition for
'tkmessageBox'
mbcb.gui : removeItem: no visible global function definition for
'tkcurselection'
mbcb.gui : removeItem: no visible binding for global variable
'importTab.f.dataList'
mbcb.gui : removeItem: no visible global function definition for
'tkdelete'
mbcb.gui : Try: no visible global function definition for
'tkmessageBox'
mbcb.gui: no visible global function definition for 'tktoplevel'
mbcb.gui: no visible global function definition for 'tkwm.resizable'
mbcb.gui: no visible global function definition for 'tkfocus'
mbcb.gui: no visible binding for '<<-' assignment to 'main.nb'
mbcb.gui: no visible global function definition for 'tk2notebook'
mbcb.gui: no visible global function definition for 'tk2notetab'
mbcb.gui: no visible binding for global variable 'main.nb'
mbcb.gui: no visible global function definition for 'tkframe'
mbcb.gui: no visible global function definition for 'tklabel'
mbcb.gui: no visible global function definition for 'tkentry'
mbcb.gui: no visible global function definition for 'tkbutton'
mbcb.gui: no visible global function definition for 'tkgrid'
mbcb.main: no visible binding for global variable 'n.array'
mbcb.main: no visible binding for '<<-' assignment to 'bgCorrSig'
mbcb.main: no visible binding for global variable 'bgCorrSig'
mbcb.parseFile: no visible global function definition for
'setTkProgressBar'
mbcb.parseFile: no visible binding for global variable 'mbcbPB'
mbcb.parseFile: no visible binding for '<<-' assignment to 'types'
mbcb.parseFile: no visible binding for global variable 'types'
mbcb.parseFile: no visible binding for '<<-' assignment to 'sig2'
mbcb.parseFile: no visible binding for global variable 'sig2'
printMBCBOutput: no visible binding for '<<-' assignment to 'dete'
printMBCBOutput: no visible global function definition for
'setTkProgressBar'
printMBCBOutput: no visible binding for global variable 'mbcbPB'
printMBCBOutput: no visible binding for global variable 'trialNames'
truesig: no visible binding for global variable 'obsbead'
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... [1s] OK
** running examples for arch 'x64' ... [2s] OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: 2 NOTEs
See
'C:/biocbld/bbs-3.2-bioc/meat/MBCB.Rcheck/00check.log'
for details.
install for i386
* installing *source* package 'MBCB' ...
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
install for x64
* installing *source* package 'MBCB' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'MBCB' as MBCB_1.24.0.zip
* DONE (MBCB)