BioC 3.2: CHECK report for IMPCdata on linux1.bioconductor.org

Package: IMPCdata

Version: 1.4.0

Command: /home/biocbuild/bbs-3.2-bioc/R/bin/R CMD check --no-vignettes --timings IMPCdata_1.4.0.tar.gz

StartedAt: 2015-10-27 04:49:30 -0400 (Tue, 27 Oct 2015)

EndedAt: 2015-10-27 04:51:20 -0400 (Tue, 27 Oct 2015)

EllapsedTime: 109.8 seconds

RetCode: 0

Status:  OK

CheckDir: IMPCdata.Rcheck

Warnings: 0

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### Running command:
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###   /home/biocbuild/bbs-3.2-bioc/R/bin/R CMD check --no-vignettes --timings IMPCdata_1.4.0.tar.gz
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* using log directory ‘/home/biocbuild/bbs-3.2-bioc/meat/IMPCdata.Rcheck’
* using R version 3.2.2 (2015-08-14)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘IMPCdata/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘IMPCdata’ version ‘1.4.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘IMPCdata’ can be installed ... [1s/1s] OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... [1s/100s] OK
Examples with CPU or elapsed time > 5s
                  user system elapsed
printAlleles     0.157  0.014  16.611
getAlleles       0.151  0.015  17.315
printGenes       0.122  0.027  16.209
getGenes         0.127  0.017  16.238
printPhenCenters 0.021  0.008   6.072
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: OK

* installing *source* package ‘IMPCdata’ ...
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (IMPCdata)

name	user	system	elapsed
getAlleles	0.151	0.015	17.315
getGenes	0.127	0.017	16.238
getIMPCDataset	0.128	0.004	1.885
getIMPCTable	0.007	0.000	0.812
getName	0.001	0.004	0.215
getParameters	0.032	0.004	4.198
getPhenCenters	0.014	0.001	2.641
getPipelines	0.004	0.000	1.113
getProcedures	0.040	0.001	4.286
getStrains	0.008	0.000	1.279
getZygosities	0.003	0.000	0.162
printAlleles	0.157	0.014	16.611
printGenes	0.122	0.027	16.209
printParameters	0.036	0.000	4.200
printPhenCenters	0.021	0.008	6.072
printPipelines	0.006	0.000	1.002
printProcedures	0.041	0.000	4.310
printStrains	0.009	0.000	1.268