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BioC 3.2: BUILD BIN report for GeneSelectMMD on perceval

This page was generated on 2015-10-27 17:33:56 -0400 (Tue, 27 Oct 2015).

Package 409/1104HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
GeneSelectMMD 2.14.0
Weiliang Qiu
Snapshot Date: 2015-10-26 19:24:07 -0400 (Mon, 26 Oct 2015)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_3_2/madman/Rpacks/GeneSelectMMD
Last Changed Rev: 109589 / Revision: 109947
Last Changed Date: 2015-10-13 15:36:05 -0400 (Tue, 13 Oct 2015)
linux1.bioconductor.org Linux (Ubuntu 14.04.2 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
windows1.bioconductor.org Windows Server 2012 R2 Enterprise SP1 (64-bit) / x64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository
perceval Mac OS X Snow Leopard (10.6.8) / x86_64  OK  OK  OK [ OK ]UNNEEDED, same version exists in internal repository
oaxaca Mac OS X Mavericks (10.9.5) / x86_64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: GeneSelectMMD
Version: 2.14.0
Command: rm -rf GeneSelectMMD.buildbin-libdir && mkdir GeneSelectMMD.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh GeneSelectMMD_2.14.0.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R GeneSelectMMD.buildbin-libdir
StartedAt: 2015-10-27 11:35:27 -0400 (Tue, 27 Oct 2015)
EndedAt: 2015-10-27 11:36:02 -0400 (Tue, 27 Oct 2015)
EllapsedTime: 35.0 seconds
RetCode: 0
Status:  OK 
PackageFile: GeneSelectMMD_2.14.0.tgz
PackageFileSize: 407.5 KiB

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   rm -rf GeneSelectMMD.buildbin-libdir && mkdir GeneSelectMMD.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh GeneSelectMMD_2.14.0.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R GeneSelectMMD.buildbin-libdir
###
##############################################################################
##############################################################################


>>>>>>> 
>>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=GeneSelectMMD.buildbin-libdir GeneSelectMMD_2.14.0.tar.gz'
>>>>>>> 

* installing *source* package ‘GeneSelectMMD’ ...
** libs
gfortran-4.2 -arch x86_64   -fPIC  -g -O2 -Wall  -c Qfunc.f -o Qfunc.o
gfortran-4.2 -arch x86_64   -fPIC  -g -O2 -Wall  -c blas.f -o blas.o
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I/usr/local/include    -fPIC  -mtune=core2 -g -O2 -Wall  -c isnan.c -o isnan.o
gfortran-4.2 -arch x86_64   -fPIC  -g -O2 -Wall  -c lbfgsb.f -o lbfgsb.o
lbfgsb.f: In function ‘cauchy’:
lbfgsb.f:1409: warning: ‘tl’ may be used uninitialized in this function
lbfgsb.f:1409: warning: ‘tu’ may be used uninitialized in this function
gfortran-4.2 -arch x86_64   -fPIC  -g -O2 -Wall  -c lbfgsbDriver.f -o lbfgsbDriver.o
gfortran-4.2 -arch x86_64   -fPIC  -g -O2 -Wall  -c linpack.f -o linpack.o
gfortran-4.2 -arch x86_64   -fPIC  -g -O2 -Wall  -c llkhFun.f -o llkhFun.o
gfortran-4.2 -arch x86_64   -fPIC  -g -O2 -Wall  -c myTtest.f -o myTtest.o
gfortran-4.2 -arch x86_64   -fPIC  -g -O2 -Wall  -c paraEstLoop.f -o paraEstLoop.o
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I/usr/local/include    -fPIC  -mtune=core2 -g -O2 -Wall  -c pt.c -o pt.o
gfortran-4.2 -arch x86_64   -fPIC  -g -O2 -Wall  -c timer.f -o timer.o
gfortran-4.2 -arch x86_64   -fPIC  -g -O2 -Wall  -c wiFun.f -o wiFun.o
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -L/usr/local/lib -o GeneSelectMMD.so Qfunc.o blas.o isnan.o lbfgsb.o lbfgsbDriver.o linpack.o llkhFun.o myTtest.o paraEstLoop.o pt.o timer.o wiFun.o -L/usr/local/lib/gcc/i686-apple-darwin8/4.2.3/x86_64 -L/usr/local/lib/x86_64 -L/usr/local/lib/gcc/i686-apple-darwin8/4.2.3 -lgfortran -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-3.2-bioc/meat/GeneSelectMMD.buildbin-libdir/GeneSelectMMD/libs
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (GeneSelectMMD)


>>>>>>> 
>>>>>>> FIXING LINKS FOR GeneSelectMMD.buildbin-libdir/GeneSelectMMD/libs//GeneSelectMMD.so
>>>>>>> 

install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/3.2/Resources/lib/libgcc_s.1.dylib" "GeneSelectMMD.buildbin-libdir/GeneSelectMMD/libs//GeneSelectMMD.so"
install_name_tool -change "/usr/local/lib/libgfortran.2.dylib" "/Library/Frameworks/R.framework/Versions/3.2/Resources/lib/libgfortran.2.dylib" "GeneSelectMMD.buildbin-libdir/GeneSelectMMD/libs//GeneSelectMMD.so"
install_name_tool -change "/usr/local/lib/libreadline.5.2.dylib" "/Library/Frameworks/R.framework/Versions/3.2/Resources/lib/libreadline.5.2.dylib" "GeneSelectMMD.buildbin-libdir/GeneSelectMMD/libs//GeneSelectMMD.so"
install_name_tool -change "/usr/local/lib/libreadline.dylib" "/Library/Frameworks/R.framework/Versions/3.2/Resources/lib/libreadline.dylib" "GeneSelectMMD.buildbin-libdir/GeneSelectMMD/libs//GeneSelectMMD.so"