BioC 3.2: INSTALL report for EBImage on linux1.bioconductor.org

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### Running command:
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###   /home/biocbuild/bbs-3.2-bioc/R/bin/R CMD INSTALL EBImage
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* installing to library ‘/home/biocbuild/bbs-3.2-bioc/R/library’
* installing *source* package ‘EBImage’ ...
** libs
gcc -std=gnu99 -I/home/biocbuild/bbs-3.2-bioc/R/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2  -Wall -c EBImage.c -o EBImage.o
gcc -std=gnu99 -I/home/biocbuild/bbs-3.2-bioc/R/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2  -Wall -c distmap.c -o distmap.o
gcc -std=gnu99 -I/home/biocbuild/bbs-3.2-bioc/R/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2  -Wall -c drawCircle.c -o drawCircle.o
g++ -I/home/biocbuild/bbs-3.2-bioc/R/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2  -Wall -c floodFill.cpp -o floodFill.o
gcc -std=gnu99 -I/home/biocbuild/bbs-3.2-bioc/R/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2  -Wall -c haralick.c -o haralick.o
gcc -std=gnu99 -I/home/biocbuild/bbs-3.2-bioc/R/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2  -Wall -c medianFilter.c -o medianFilter.o
gcc -std=gnu99 -I/home/biocbuild/bbs-3.2-bioc/R/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2  -Wall -c morphology.c -o morphology.o
morphology.c: In function ‘compute_lookup_table_for_line_dilate’:
morphology.c:59:7: warning: statement with no effect [-Wunused-value]
       for (i; i < 0; ++i) {
       ^
morphology.c:62:7: warning: statement with no effect [-Wunused-value]
       for (i; i < maxX; ++i) {
       ^
morphology.c:65:7: warning: statement with no effect [-Wunused-value]
       for (i; i < size.x + set->maxXoffset; ++i) {
       ^
morphology.c: In function ‘compute_lookup_table_for_line_erode’:
morphology.c:89:5: warning: statement with no effect [-Wunused-value]
     for (i; i < 0; ++i) {
     ^
morphology.c:92:5: warning: statement with no effect [-Wunused-value]
     for (i; i < maxX; ++i) {
     ^
morphology.c:95:5: warning: statement with no effect [-Wunused-value]
     for (i; i < size.x + set->maxXoffset; ++i) {
     ^
gcc -std=gnu99 -I/home/biocbuild/bbs-3.2-bioc/R/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2  -Wall -c nativeRaster.c -o nativeRaster.o
nativeRaster.c: In function ‘nativeRaster’:
nativeRaster.c:38:7: warning: pointer targets in assignment differ in signedness [-Wpointer-sign]
   out = INTEGER(res);
       ^
gcc -std=gnu99 -I/home/biocbuild/bbs-3.2-bioc/R/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2  -Wall -c normalize.c -o normalize.o
gcc -std=gnu99 -I/home/biocbuild/bbs-3.2-bioc/R/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2  -Wall -c objects.c -o objects.o
In file included from objects.h:5:0,
                 from objects.c:1:
objects.c: In function ‘stackObjects’:
/home/biocbuild/bbs-3.2-bioc/R/include/Rdefines.h:132:37: warning: ‘dim’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 #define SET_DIM(x, n)      setAttrib(x, R_DimSymbol, n)
                                     ^
objects.c:171:22: note: ‘dim’ was declared here
   SEXP res, st=NULL, dim, xys;
                      ^
gcc -std=gnu99 -I/home/biocbuild/bbs-3.2-bioc/R/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2  -Wall -c ocontour.c -o ocontour.o
g++ -I/home/biocbuild/bbs-3.2-bioc/R/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2  -Wall -c propagate.cpp -o propagate.o
gcc -std=gnu99 -I/home/biocbuild/bbs-3.2-bioc/R/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2  -Wall -c spatial.c -o spatial.o
gcc -std=gnu99 -I/home/biocbuild/bbs-3.2-bioc/R/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2  -Wall -c thresh.c -o thresh.o
gcc -std=gnu99 -I/home/biocbuild/bbs-3.2-bioc/R/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2  -Wall -c tile.c -o tile.o
gcc -std=gnu99 -I/home/biocbuild/bbs-3.2-bioc/R/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2  -Wall -c tools.c -o tools.o
g++ -I/home/biocbuild/bbs-3.2-bioc/R/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2  -Wall -c watershed.cpp -o watershed.o
g++ -shared -L/home/biocbuild/bbs-3.2-bioc/R/lib -L/usr/local/lib -o EBImage.so EBImage.o distmap.o drawCircle.o floodFill.o haralick.o medianFilter.o morphology.o nativeRaster.o normalize.o objects.o ocontour.o propagate.o spatial.o thresh.o tile.o tools.o watershed.o -L/home/biocbuild/bbs-3.2-bioc/R/lib -lR
installing to /home/biocbuild/bbs-3.2-bioc/R/library/EBImage/libs
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (EBImage)
BioC 3.2: INSTALL report for EBImage on linux1.bioconductor.org

Summary

Command output
