BioC 3.2: CHECK report for MPFE on moscato1

Package: MPFE

Version: 1.5.0

Command: rm -rf MPFE.buildbin-libdir MPFE.Rcheck && mkdir MPFE.buildbin-libdir MPFE.Rcheck && D:\biocbld\bbs-3.2-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=MPFE.buildbin-libdir MPFE_1.5.0.tar.gz >MPFE.Rcheck\00install.out 2>&1 && cp MPFE.Rcheck\00install.out MPFE-install.out && D:\biocbld\bbs-3.2-bioc\R\bin\R.exe CMD check --library=MPFE.buildbin-libdir --install="check:MPFE-install.out" --force-multiarch --no-vignettes --timings MPFE_1.5.0.tar.gz

StartedAt: 2015-08-20 07:36:47 -0700 (Thu, 20 Aug 2015)

EndedAt: 2015-08-20 07:37:16 -0700 (Thu, 20 Aug 2015)

EllapsedTime: 28.5 seconds

RetCode: 0

Status:  OK

CheckDir: MPFE.Rcheck

Warnings: 0

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### Running command:
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###   rm -rf MPFE.buildbin-libdir MPFE.Rcheck && mkdir MPFE.buildbin-libdir MPFE.Rcheck && D:\biocbld\bbs-3.2-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=MPFE.buildbin-libdir MPFE_1.5.0.tar.gz >MPFE.Rcheck\00install.out 2>&1 && cp MPFE.Rcheck\00install.out MPFE-install.out  && D:\biocbld\bbs-3.2-bioc\R\bin\R.exe CMD check --library=MPFE.buildbin-libdir --install="check:MPFE-install.out" --force-multiarch --no-vignettes --timings MPFE_1.5.0.tar.gz
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* using log directory 'D:/biocbld/bbs-3.2-bioc/meat/MPFE.Rcheck'
* using R version 3.2.2 (2015-08-14)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'MPFE/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'MPFE' version '1.5.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'MPFE' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... [2s] OK
** running examples for arch 'x64' ... [3s] OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: OK

install for i386

* installing *source* package 'MPFE' ...
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded

install for x64

* installing *source* package 'MPFE' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'MPFE' as MPFE_1.5.0.zip
* DONE (MPFE)

name	user	system	elapsed
MPFE-package	0.24	0.01	0.26
estimatePatterns	0.53	0.00	0.53
patternMap	0.20	0.00	0.21
plotPatterns	0.30	0.00	0.29

name	user	system	elapsed
MPFE-package	0.43	0.00	0.61
estimatePatterns	0.60	0.00	0.59
patternMap	0.53	0.00	0.53
plotPatterns	0.40	0.00	0.41