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BioC 3.2: BUILD BIN report for MEDME on oaxaca

This page was generated on 2015-08-24 10:55:56 -0700 (Mon, 24 Aug 2015).

Package 591/1071HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
MEDME 1.29.0
Mattia Pelizzola
Snapshot Date: 2015-08-23 16:24:14 -0700 (Sun, 23 Aug 2015)
URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/MEDME
Last Changed Rev: 102594 / Revision: 107696
Last Changed Date: 2015-04-16 13:02:44 -0700 (Thu, 16 Apr 2015)
zin1 Linux (Ubuntu 14.04.2 LTS) / x86_64  NotNeeded  OK  WARNINGS UNNEEDED, same version exists in internal repository
perceval Mac OS X Snow Leopard (10.6.8) / x86_64  NotNeeded  OK  WARNINGS  OK UNNEEDED, same version exists in internal repository
oaxaca Mac OS X Mavericks (10.9.5) / x86_64  NotNeeded  OK  WARNINGS [ OK ]UNNEEDED, same version exists in internal repository

Summary

Package: MEDME
Version: 1.29.0
Command: rm -rf MEDME.buildbin-libdir && mkdir MEDME.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh MEDME_1.29.0.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R MEDME.buildbin-libdir
StartedAt: 2015-08-24 05:17:47 -0700 (Mon, 24 Aug 2015)
EndedAt: 2015-08-24 05:18:02 -0700 (Mon, 24 Aug 2015)
EllapsedTime: 14.5 seconds
RetCode: 0
Status:  OK 
PackageFile: MEDME_1.29.0.tgz
PackageFileSize: 498.1 KiB

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   rm -rf MEDME.buildbin-libdir && mkdir MEDME.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh MEDME_1.29.0.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R MEDME.buildbin-libdir
###
##############################################################################
##############################################################################


>>>>>>> 
>>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=MEDME.buildbin-libdir MEDME_1.29.0.tar.gz'
>>>>>>> 

* installing *source* package ‘MEDME’ ...
** libs
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include    -fPIC  -Wall -mtune=core2 -g -O2  -c MEDMEweight.c -o MEDMEweight.o
clang -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o MEDME.so MEDMEweight.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-3.2-bioc/meat/MEDME.buildbin-libdir/MEDME/libs
** R
** data
** inst
** preparing package for lazy loading
Note: the specification for S3 class “family” in package ‘MatrixModels’ seems equivalent to one from package ‘lme4’: not turning on duplicate class definitions for this class.
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
Note: the specification for S3 class “family” in package ‘MatrixModels’ seems equivalent to one from package ‘lme4’: not turning on duplicate class definitions for this class.
* DONE (MEDME)


>>>>>>> 
>>>>>>> FIXING LINKS FOR MEDME.buildbin-libdir/MEDME/libs//MEDME.so
>>>>>>> 

install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/3.2/Resources/lib/libgcc_s.1.dylib" "MEDME.buildbin-libdir/MEDME/libs//MEDME.so"
install_name_tool -change "/usr/local/lib/libgfortran.3.dylib" "/Library/Frameworks/R.framework/Versions/3.2/Resources/lib/libgfortran.3.dylib" "MEDME.buildbin-libdir/MEDME/libs//MEDME.so"
install_name_tool -change "/usr/local/lib/libreadline.5.2.dylib" "/Library/Frameworks/R.framework/Versions/3.2/Resources/lib/libreadline.5.2.dylib" "MEDME.buildbin-libdir/MEDME/libs//MEDME.so"
install_name_tool -change "/usr/local/lib/libreadline.dylib" "/Library/Frameworks/R.framework/Versions/3.2/Resources/lib/libreadline.dylib" "MEDME.buildbin-libdir/MEDME/libs//MEDME.so"
install_name_tool -change "/usr/local/lib/libquadmath.0.dylib" "/Library/Frameworks/R.framework/Versions/3.2/Resources/lib/libquadmath.0.dylib" "MEDME.buildbin-libdir/MEDME/libs//MEDME.so"