Back to Build/check report for BioC 3.19 experimental data |
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This page was generated on 2024-09-10 14:51 -0400 (Tue, 10 Sep 2024).
Hostname | OS | Arch (*) | R version | Installed pkgs |
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nebbiolo1 | Linux (Ubuntu 22.04.3 LTS) | x86_64 | 4.4.1 (2024-06-14) -- "Race for Your Life" | 4758 |
Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X |
Package 294/430 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | ||||||||
prebsdata 1.40.0 (landing page) Karolis Uziela
| nebbiolo1 | Linux (Ubuntu 22.04.3 LTS) / x86_64 | OK | OK | OK | ![]() | |||||||
To the developers/maintainers of the prebsdata package: - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
Package: prebsdata |
Version: 1.40.0 |
Command: /home/biocbuild/bbs-3.19-bioc/R/bin/R CMD check --install=check:prebsdata.install-out.txt --library=/home/biocbuild/bbs-3.19-bioc/R/site-library --timings prebsdata_1.40.0.tar.gz |
StartedAt: 2024-09-10 11:49:57 -0400 (Tue, 10 Sep 2024) |
EndedAt: 2024-09-10 11:50:08 -0400 (Tue, 10 Sep 2024) |
EllapsedTime: 11.0 seconds |
RetCode: 0 |
Status: OK |
CheckDir: prebsdata.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.19-bioc/R/bin/R CMD check --install=check:prebsdata.install-out.txt --library=/home/biocbuild/bbs-3.19-bioc/R/site-library --timings prebsdata_1.40.0.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/home/biocbuild/bbs-3.19-data-experiment/meat/prebsdata.Rcheck’ * using R version 4.4.1 (2024-06-14) * using platform: x86_64-pc-linux-gnu * R was compiled by gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 GNU Fortran (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 * running under: Ubuntu 22.04.4 LTS * using session charset: UTF-8 * checking for file ‘prebsdata/DESCRIPTION’ ... OK * this is package ‘prebsdata’ version ‘1.40.0’ * checking package namespace information ... OK * checking package dependencies ...Warning: unable to access index for repository https://CRAN.R-project.org/src/contrib: cannot open URL 'https://CRAN.R-project.org/src/contrib/PACKAGES' OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘prebsdata’ can be installed ... OK * checking installed package size ... NOTE installed size is 42.0Mb sub-directories of 1Mb or more: custom-cdf 9.1Mb manufacturer-cdf 32.1Mb * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... NOTE Malformed Description field: should contain one or more complete sentences. * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking loading without being on the library search path ... OK * checking files in ‘vignettes’ ... OK * checking examples ... NONE * checking for unstated dependencies in vignettes ... OK * checking package vignettes ... OK * checking re-building of vignette outputs ... OK * checking PDF version of manual ... OK * DONE Status: 2 NOTEs See ‘/home/biocbuild/bbs-3.19-data-experiment/meat/prebsdata.Rcheck/00check.log’ for details.
prebsdata.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.19-bioc/R/bin/R CMD INSTALL prebsdata ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.19-bioc/R/site-library’ * installing *source* package ‘prebsdata’ ... ** using staged installation ** inst ** help No man pages found in package ‘prebsdata’ *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (prebsdata)