Mike Jiang
| Snapshot Date: 2024-05-08 14:00:19 -0400 (Wed, 08 May 2024) |
| git_url: https://git.bioconductor.org/packages/flowCore |
| git_branch: RELEASE_3_19 |
| git_last_commit: 48fe6de |
| git_last_commit_date: 2024-04-30 10:16:03 -0400 (Tue, 30 Apr 2024) |
| Back to Multiple platform build/check report for BioC 3.19: simplified long |
|
This page was generated on 2024-05-09 11:40:50 -0400 (Thu, 09 May 2024).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 22.04.3 LTS) | x86_64 | 4.4.0 (2024-04-24) -- "Puppy Cup" | 4748 |
| palomino3 | Windows Server 2022 Datacenter | x64 | 4.4.0 (2024-04-24 ucrt) -- "Puppy Cup" | 4484 |
| lconway | macOS 12.7.1 Monterey | x86_64 | 4.4.0 (2024-04-24) -- "Puppy Cup" | 4514 |
| kunpeng2 | Linux (openEuler 22.03 LTS-SP1) | aarch64 | 4.4.0 beta (2024-04-15 r86425) -- "Puppy Cup" | 4480 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 736/2300 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| flowCore 2.16.0 (landing page) Mike Jiang
| nebbiolo1 | Linux (Ubuntu 22.04.3 LTS) / x86_64 | OK | OK | WARNINGS | | ||||||||
| palomino3 | Windows Server 2022 Datacenter / x64 | OK | OK | WARNINGS | OK | | ||||||||
| lconway | macOS 12.7.1 Monterey / x86_64 | OK | OK | WARNINGS | OK | | ||||||||
| kunpeng2 | Linux (openEuler 22.03 LTS-SP1) / aarch64 | OK | OK | WARNINGS | ||||||||||
| kjohnson3 | macOS 13.6.5 Ventura / arm64 | see weekly results here | ||||||||||||
|
To the developers/maintainers of the flowCore package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/flowCore.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. - See Martin Grigorov's blog post for how to debug Linux ARM64 related issues on a x86_64 host. |
| Package: flowCore |
| Version: 2.16.0 |
| Command: /home/biocbuild/R/R-beta-2024-04-15_r86425/bin/R CMD INSTALL flowCore |
| StartedAt: 2024-05-08 20:14:09 -0000 (Wed, 08 May 2024) |
| EndedAt: 2024-05-08 20:15:21 -0000 (Wed, 08 May 2024) |
| EllapsedTime: 71.4 seconds |
| RetCode: 0 |
| Status: OK |
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/R/R-beta-2024-04-15_r86425/bin/R CMD INSTALL flowCore ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/R/R-beta-2024-04-15_r86425/site-library’ * installing *source* package ‘flowCore’ ... ** using staged installation ** libs using C++ compiler: ‘g++ (GCC) 10.3.1’ using C++17 g++ -std=gnu++17 -I"/home/biocbuild/R/R-beta-2024-04-15_r86425/include" -DNDEBUG -DBOOST_NO_AUTO_PTR -w -Wfatal-errors -I'/home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/cpp11/include' -I'/home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/BH/include' -I'/home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/cytolib/include' -I'/home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/RProtoBufLib/include' -I/usr/local/include -fPIC -g -O2 -Wall -c FastLogicle.cpp -o FastLogicle.o g++ -std=gnu++17 -I"/home/biocbuild/R/R-beta-2024-04-15_r86425/include" -DNDEBUG -DBOOST_NO_AUTO_PTR -w -Wfatal-errors -I'/home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/cpp11/include' -I'/home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/BH/include' -I'/home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/cytolib/include' -I'/home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/RProtoBufLib/include' -I/usr/local/include -fPIC -g -O2 -Wall -c Hyperlog.cpp -o Hyperlog.o g++ -std=gnu++17 -I"/home/biocbuild/R/R-beta-2024-04-15_r86425/include" -DNDEBUG -DBOOST_NO_AUTO_PTR -w -Wfatal-errors -I'/home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/cpp11/include' -I'/home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/BH/include' -I'/home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/cytolib/include' -I'/home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/RProtoBufLib/include' -I/usr/local/include -fPIC -g -O2 -Wall -c Logicle.cpp -o Logicle.o g++ -std=gnu++17 -I"/home/biocbuild/R/R-beta-2024-04-15_r86425/include" -DNDEBUG -DBOOST_NO_AUTO_PTR -w -Wfatal-errors -I'/home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/cpp11/include' -I'/home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/BH/include' -I'/home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/cytolib/include' -I'/home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/RProtoBufLib/include' -I/usr/local/include -fPIC -g -O2 -Wall -c biexponential.cpp -o biexponential.o g++ -std=gnu++17 -I"/home/biocbuild/R/R-beta-2024-04-15_r86425/include" -DNDEBUG -DBOOST_NO_AUTO_PTR -w -Wfatal-errors -I'/home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/cpp11/include' -I'/home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/BH/include' -I'/home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/cytolib/include' -I'/home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/RProtoBufLib/include' -I/usr/local/include -fPIC -g -O2 -Wall -c convertRawBytes.cpp -o convertRawBytes.o g++ -std=gnu++17 -I"/home/biocbuild/R/R-beta-2024-04-15_r86425/include" -DNDEBUG -DBOOST_NO_AUTO_PTR -w -Wfatal-errors -I'/home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/cpp11/include' -I'/home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/BH/include' -I'/home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/cytolib/include' -I'/home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/RProtoBufLib/include' -I/usr/local/include -fPIC -g -O2 -Wall -c cpp11.cpp -o cpp11.o g++ -std=gnu++17 -I"/home/biocbuild/R/R-beta-2024-04-15_r86425/include" -DNDEBUG -DBOOST_NO_AUTO_PTR -w -Wfatal-errors -I'/home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/cpp11/include' -I'/home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/BH/include' -I'/home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/cytolib/include' -I'/home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/RProtoBufLib/include' -I/usr/local/include -fPIC -g -O2 -Wall -c fcsTextParse.cpp -o fcsTextParse.o g++ -std=gnu++17 -I"/home/biocbuild/R/R-beta-2024-04-15_r86425/include" -DNDEBUG -DBOOST_NO_AUTO_PTR -w -Wfatal-errors -I'/home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/cpp11/include' -I'/home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/BH/include' -I'/home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/cytolib/include' -I'/home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/RProtoBufLib/include' -I/usr/local/include -fPIC -g -O2 -Wall -c hyperlogTransform.cpp -o hyperlogTransform.o g++ -std=gnu++17 -I"/home/biocbuild/R/R-beta-2024-04-15_r86425/include" -DNDEBUG -DBOOST_NO_AUTO_PTR -w -Wfatal-errors -I'/home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/cpp11/include' -I'/home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/BH/include' -I'/home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/cytolib/include' -I'/home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/RProtoBufLib/include' -I/usr/local/include -fPIC -g -O2 -Wall -c inPolygon.cpp -o inPolygon.o g++ -std=gnu++17 -I"/home/biocbuild/R/R-beta-2024-04-15_r86425/include" -DNDEBUG -DBOOST_NO_AUTO_PTR -w -Wfatal-errors -I'/home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/cpp11/include' -I'/home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/BH/include' -I'/home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/cytolib/include' -I'/home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/RProtoBufLib/include' -I/usr/local/include -fPIC -g -O2 -Wall -c inPolytope.cpp -o inPolytope.o g++ -std=gnu++17 -I"/home/biocbuild/R/R-beta-2024-04-15_r86425/include" -DNDEBUG -DBOOST_NO_AUTO_PTR -w -Wfatal-errors -I'/home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/cpp11/include' -I'/home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/BH/include' -I'/home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/cytolib/include' -I'/home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/RProtoBufLib/include' -I/usr/local/include -fPIC -g -O2 -Wall -c logicleTransform.cpp -o logicleTransform.o g++ -std=gnu++17 -I"/home/biocbuild/R/R-beta-2024-04-15_r86425/include" -DNDEBUG -DBOOST_NO_AUTO_PTR -w -Wfatal-errors -I'/home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/cpp11/include' -I'/home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/BH/include' -I'/home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/cytolib/include' -I'/home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/RProtoBufLib/include' -I/usr/local/include -fPIC -g -O2 -Wall -c poly_centroid.cpp -o poly_centroid.o g++ -std=gnu++17 -I"/home/biocbuild/R/R-beta-2024-04-15_r86425/include" -DNDEBUG -DBOOST_NO_AUTO_PTR -w -Wfatal-errors -I'/home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/cpp11/include' -I'/home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/BH/include' -I'/home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/cytolib/include' -I'/home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/RProtoBufLib/include' -I/usr/local/include -fPIC -g -O2 -Wall -c sortBytes.cpp -o sortBytes.o g++ -std=gnu++17 -I"/home/biocbuild/R/R-beta-2024-04-15_r86425/include" -DNDEBUG -DBOOST_NO_AUTO_PTR -w -Wfatal-errors -I'/home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/cpp11/include' -I'/home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/BH/include' -I'/home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/cytolib/include' -I'/home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/RProtoBufLib/include' -I/usr/local/include -fPIC -g -O2 -Wall -c uint2double.cpp -o uint2double.o g++ -std=gnu++17 -I"/home/biocbuild/R/R-beta-2024-04-15_r86425/include" -DNDEBUG -DBOOST_NO_AUTO_PTR -w -Wfatal-errors -I'/home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/cpp11/include' -I'/home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/BH/include' -I'/home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/cytolib/include' -I'/home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/RProtoBufLib/include' -I/usr/local/include -fPIC -g -O2 -Wall -c zeroin.cpp -o zeroin.o g++ -std=gnu++17 -shared -L/home/biocbuild/R/R-beta-2024-04-15_r86425/lib -L/usr/local/lib -o flowCore.so FastLogicle.o Hyperlog.o Logicle.o biexponential.o convertRawBytes.o cpp11.o fcsTextParse.o hyperlogTransform.o inPolygon.o inPolytope.o logicleTransform.o poly_centroid.o sortBytes.o uint2double.o zeroin.o /home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/cytolib/lib/libcytolib.a -L/home/biocbuild/R/R-beta-2024-04-15_r86425/lib -lR if [ `uname -s` = 'Darwin' ]; then install_name_tool -change /usr/local/clang4/lib/libc++.1.dylib /usr/lib/libc++.1.dylib flowCore.so; fi installing to /home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/00LOCK-flowCore/00new/flowCore/libs ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (flowCore)