Multiple platform build/check report for BioC 3.19 - BUILD results for STRINGdb on kunpeng2

Hostname	OS	Arch (*)	R version	Installed pkgs
nebbiolo1	Linux (Ubuntu 22.04.3 LTS)	x86_64	4.4.0 (2024-04-24) -- "Puppy Cup"	4748
palomino3	Windows Server 2022 Datacenter	x64	4.4.0 (2024-04-24 ucrt) -- "Puppy Cup"	4484
lconway	macOS 12.7.1 Monterey	x86_64	4.4.0 (2024-04-24) -- "Puppy Cup"	4514
kunpeng2	Linux (openEuler 22.03 LTS-SP1)	aarch64	4.4.0 beta (2024-04-15 r86425) -- "Puppy Cup"	4480
Click on any hostname to see more info about the system (e.g. compilers) () as reported by 'uname -p', except on Windows and Mac OS X*

To the developers/maintainers of the STRINGdb package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/STRINGdb.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.
- See Martin Grigorov's blog post for how to debug Linux ARM64 related issues on a x86_64 host.

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### Running command:
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###   /home/biocbuild/R/R-beta-2024-04-15_r86425/bin/R CMD build --keep-empty-dirs --no-resave-data STRINGdb
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* checking for file ‘STRINGdb/DESCRIPTION’ ... OK
* preparing ‘STRINGdb’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘STRINGdb.Rnw’ using Sweave
trying URL 'https://stringdb-downloads.org/download/protein.aliases.v12.0/9606.protein.aliases.v12.0.txt.gz'
Content type 'application/octet-stream' length 19777800 bytes (18.9 MB)
==================================================
downloaded 18.9 MB

trying URL 'https://stringdb-downloads.org/download/protein.info.v12.0/9606.protein.info.v12.0.txt.gz'
Content type 'application/octet-stream' length 1970090 bytes (1.9 MB)
==================================================
downloaded 1.9 MB

trying URL 'https://stringdb-downloads.org/download/protein.links.v12.0/9606.protein.links.v12.0.txt.gz'
Content type 'application/octet-stream' length 83164437 bytes (79.3 MB)
==================================================
downloaded 79.3 MB

Error: processing vignette 'STRINGdb.Rnw' failed with diagnostics:
Running 'texi2dvi' on 'STRINGdb.tex' failed.
LaTeX errors:
! Missing $ inserted.
<inserted text> 
                $
l.43 ...on (https://string-db.org/cgi/input?input_
                                                  page_active_form=organisms...
! Emergency stop.
<inserted text> 
                $
l.43 ...on (https://string-db.org/cgi/input?input_
                                                  page_active_form=organisms...
!  ==> Fatal error occurred, no output PDF file produced!
--- failed re-building ‘STRINGdb.Rnw’

SUMMARY: processing the following file failed:
  ‘STRINGdb.Rnw’

Error: Vignette re-building failed.
Execution halted

BUILD results for STRINGdb on kunpeng2

Summary

Command output