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This page was generated on 2024-04-16 14:51:28 -0400 (Tue, 16 Apr 2024).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 22.04.3 LTS)x86_644.3.3 (2024-02-29) -- "Angel Food Cake" 4676
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 106/429HostnameOS / ArchINSTALLBUILDCHECK
DvDdata 1.38.0  (landing page)
J. Saez-Rodriguez
Snapshot Date: 2024-04-16 07:30:02 -0400 (Tue, 16 Apr 2024)
git_url: https://git.bioconductor.org/packages/DvDdata
git_branch: RELEASE_3_18
git_last_commit: 191d798
git_last_commit_date: 2023-10-24 09:04:46 -0400 (Tue, 24 Oct 2023)
nebbiolo2Linux (Ubuntu 22.04.3 LTS) / x86_64  OK    OK    WARNINGS  UNNEEDED, same version is already published

CHECK results for DvDdata on nebbiolo2


To the developers/maintainers of the DvDdata package:
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: DvDdata
Version: 1.38.0
Command: /home/biocbuild/bbs-3.18-bioc/R/bin/R CMD check --install=check:DvDdata.install-out.txt --library=/home/biocbuild/bbs-3.18-bioc/R/site-library --timings DvDdata_1.38.0.tar.gz
StartedAt: 2024-04-16 11:24:02 -0400 (Tue, 16 Apr 2024)
EndedAt: 2024-04-16 11:24:17 -0400 (Tue, 16 Apr 2024)
EllapsedTime: 15.3 seconds
RetCode: 0
Status:   WARNINGS  
CheckDir: DvDdata.Rcheck
Warnings: 1

Command output

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### Running command:
###
###   /home/biocbuild/bbs-3.18-bioc/R/bin/R CMD check --install=check:DvDdata.install-out.txt --library=/home/biocbuild/bbs-3.18-bioc/R/site-library --timings DvDdata_1.38.0.tar.gz
###
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* using log directory ‘/home/biocbuild/bbs-3.18-data-experiment/meat/DvDdata.Rcheck’
* using R version 4.3.3 (2024-02-29)
* using platform: x86_64-pc-linux-gnu (64-bit)
* R was compiled by
    gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0
    GNU Fortran (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0
* running under: Ubuntu 22.04.4 LTS
* using session charset: UTF-8
* checking for file ‘DvDdata/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘DvDdata’ version ‘1.38.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘DvDdata’ can be installed ... OK
* checking installed package size ... NOTE
  installed size is 44.0Mb
  sub-directories of 1Mb or more:
    data  43.9Mb
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking Rd files ... NOTE
prepare_Rd: DvDdata-package.Rd:35-37: Dropping empty section \seealso
prepare_Rd: GEOfactorvalues.Rd:18-20: Dropping empty section \references
prepare_Rd: annotationlist.Rd:17-18: Dropping empty section \source
prepare_Rd: druglabels.Rd:11-13: Dropping empty section \details
prepare_Rd: genelist.Rd:14-16: Dropping empty section \source
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking LazyData ... WARNING
  LazyData DB of 43.9 MB without LazyDataCompression set
  See §1.1.6 of 'Writing R Extensions'
* checking data for ASCII and uncompressed saves ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ...
  ‘DvDdata.Rnw’ using ‘UTF-8’... OK
 OK
* checking re-building of vignette outputs ... OK
* checking PDF version of manual ... OK
* DONE

Status: 1 WARNING, 2 NOTEs
See
  ‘/home/biocbuild/bbs-3.18-data-experiment/meat/DvDdata.Rcheck/00check.log’
for details.



Installation output

DvDdata.Rcheck/00install.out

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###
### Running command:
###
###   /home/biocbuild/bbs-3.18-bioc/R/bin/R CMD INSTALL DvDdata
###
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* installing to library ‘/home/biocbuild/bbs-3.18-bioc/R/site-library’
* installing *source* package ‘DvDdata’ ...
** using staged installation
** data
*** moving datasets to lazyload DB
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (DvDdata)

Tests output


Example timings

DvDdata.Rcheck/DvDdata-Ex.timings

nameusersystemelapsed
DvDdata-package0.0120.0000.013
GEOfactorvalues0.0010.0000.001
annotationlist0.0010.0000.001
cytodisease0.0000.0000.001
cytodrug0.0010.0000.001
diseaseClusters0.0010.0000.001
diseaseRL0.0010.0000.001
diseaselabels0.0010.0000.000
drugClusters0.0010.0000.000
drugRL0.0010.0000.000
druglabels0.0010.0000.000
genelist0.0010.0000.000