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This page was generated on 2024-04-18 11:32:16 -0400 (Thu, 18 Apr 2024).

HostnameOSArch (*)R versionInstalled pkgs
kjohnson1macOS 13.6.1 Venturaarm644.3.3 (2024-02-29) -- "Angel Food Cake" 4388
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Package 1626/2266HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
qpgraph 2.36.0  (landing page)
Robert Castelo
Snapshot Date: 2024-04-16 09:00:03 -0400 (Tue, 16 Apr 2024)
git_url: https://git.bioconductor.org/packages/qpgraph
git_branch: RELEASE_3_18
git_last_commit: 08faf23
git_last_commit_date: 2023-10-24 09:41:20 -0400 (Tue, 24 Oct 2023)
kjohnson1macOS 13.6.1 Ventura / arm64  OK    OK    WARNINGS    OK  UNNEEDED, same version is already published

INSTALL results for qpgraph on kjohnson1


To the developers/maintainers of the qpgraph package:
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: qpgraph
Version: 2.36.0
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL qpgraph
StartedAt: 2024-04-16 11:08:24 -0400 (Tue, 16 Apr 2024)
EndedAt: 2024-04-16 11:09:35 -0400 (Tue, 16 Apr 2024)
EllapsedTime: 71.6 seconds
RetCode: 0
Status:   OK  

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL qpgraph
###
##############################################################################
##############################################################################


* installing to library ‘/Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library’
* installing *source* package ‘qpgraph’ ...
** using staged installation
checking for gcc... clang -arch arm64
checking for C compiler default output file name... a.out
checking whether the C compiler works... yes
checking whether we are cross compiling... no
checking for suffix of executables... 
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether clang -arch arm64 accepts -g... yes
checking for clang -arch arm64 option to accept ANSI C... none needed
checking build system type... aarch64-apple-darwin22.6.0
checking host system type... aarch64-apple-darwin22.6.0
configure: creating ./config.status
config.status: creating src/Makevars
** libs
using C compiler: ‘Apple clang version 15.0.0 (clang-1500.0.40.1)’
using SDK: ‘MacOSX11.3.sdk’
clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/arm64/include -DUSE_FC_LEN_T  -I/opt/R/arm64/include   -falign-functions=64 -Wall -g -O2 -Wall -pedantic -fPIC  -falign-functions=64 -Wall -g -O2  -c cliquer.c -o cliquer.o
cliquer.c:13:46: warning: invalid UTF-8 in comment [-Winvalid-utf8]
 * Copyright (C) 2002 Sampo Niskanen, Patric <D6>sterg<E5>rd.
                                             ^
cliquer.c:13:52: warning: invalid UTF-8 in comment [-Winvalid-utf8]
 * Copyright (C) 2002 Sampo Niskanen, Patric <D6>sterg<E5>rd.
                                                      ^
In file included from cliquer.c:29:
In file included from ./cliquer.h:7:
./set.h:12:46: warning: invalid UTF-8 in comment [-Winvalid-utf8]
 * Copyright (C) 2002 Sampo Niskanen, Patric <D6>sterg<E5>rd.
                                             ^
./set.h:12:52: warning: invalid UTF-8 in comment [-Winvalid-utf8]
 * Copyright (C) 2002 Sampo Niskanen, Patric <D6>sterg<E5>rd.
                                                      ^
4 warnings generated.
clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/arm64/include -DUSE_FC_LEN_T  -I/opt/R/arm64/include   -falign-functions=64 -Wall -g -O2 -Wall -pedantic -fPIC  -falign-functions=64 -Wall -g -O2  -c graph.c -o graph.o
graph.c:12:46: warning: invalid UTF-8 in comment [-Winvalid-utf8]
 * Copyright (C) 2002 Sampo Niskanen, Patric <D6>sterg<E5>rd.
                                             ^
graph.c:12:52: warning: invalid UTF-8 in comment [-Winvalid-utf8]
 * Copyright (C) 2002 Sampo Niskanen, Patric <D6>sterg<E5>rd.
                                                      ^
In file included from graph.c:28:
In file included from ./graph.h:5:
./set.h:12:46: warning: invalid UTF-8 in comment [-Winvalid-utf8]
 * Copyright (C) 2002 Sampo Niskanen, Patric <D6>sterg<E5>rd.
                                             ^
./set.h:12:52: warning: invalid UTF-8 in comment [-Winvalid-utf8]
 * Copyright (C) 2002 Sampo Niskanen, Patric <D6>sterg<E5>rd.
                                                      ^
4 warnings generated.
clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/arm64/include -DUSE_FC_LEN_T  -I/opt/R/arm64/include   -falign-functions=64 -Wall -g -O2 -Wall -pedantic -fPIC  -falign-functions=64 -Wall -g -O2  -c qpgraph.c -o qpgraph.o
qpgraph.c:24:9: warning: 'USE_FC_LEN_T' macro redefined [-Wmacro-redefined]
#define USE_FC_LEN_T
        ^
<command line>:2:9: note: previous definition is here
#define USE_FC_LEN_T 1
        ^
In file included from qpgraph.c:39:
In file included from ./cliquer.h:7:
./set.h:12:46: warning: invalid UTF-8 in comment [-Winvalid-utf8]
 * Copyright (C) 2002 Sampo Niskanen, Patric <D6>sterg<E5>rd.
                                             ^
./set.h:12:52: warning: invalid UTF-8 in comment [-Winvalid-utf8]
 * Copyright (C) 2002 Sampo Niskanen, Patric <D6>sterg<E5>rd.
                                                      ^
qpgraph.c:5176:10: warning: variable 'avgpr' set but not used [-Wunused-but-set-variable]
  double avgpr = 0;
         ^
4 warnings generated.
clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/arm64/include -DUSE_FC_LEN_T  -I/opt/R/arm64/include   -falign-functions=64 -Wall -g -O2 -Wall -pedantic -fPIC  -falign-functions=64 -Wall -g -O2  -c reorder.c -o reorder.o
reorder.c:12:46: warning: invalid UTF-8 in comment [-Winvalid-utf8]
 * Copyright (C) 2002 Sampo Niskanen, Patric <D6>sterg<E5>rd.
                                             ^
reorder.c:12:52: warning: invalid UTF-8 in comment [-Winvalid-utf8]
 * Copyright (C) 2002 Sampo Niskanen, Patric <D6>sterg<E5>rd.
                                                      ^
In file included from reorder.c:19:
In file included from ./reorder.h:5:
./set.h:12:46: warning: invalid UTF-8 in comment [-Winvalid-utf8]
 * Copyright (C) 2002 Sampo Niskanen, Patric <D6>sterg<E5>rd.
                                             ^
./set.h:12:52: warning: invalid UTF-8 in comment [-Winvalid-utf8]
 * Copyright (C) 2002 Sampo Niskanen, Patric <D6>sterg<E5>rd.
                                                      ^
4 warnings generated.
clang -arch arm64 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -L/Library/Frameworks/R.framework/Resources/lib -L/opt/R/arm64/lib -o qpgraph.so cliquer.o graph.o qpgraph.o reorder.o -L/Library/Frameworks/R.framework/Resources/lib -lRlapack -L/Library/Frameworks/R.framework/Resources/lib -lRblas -L/opt/gfortran/lib/gcc/aarch64-apple-darwin20.0/12.2.0 -L/opt/gfortran/lib -lgfortran -lemutls_w -lquadmath -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/00LOCK-qpgraph/00new/qpgraph/libs
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
Creating a generic function for ‘det’ from package ‘Matrix’ in package ‘qpgraph’
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (qpgraph)