Multiple platform build/check report for BioC 3.18 - BUILD results for mAPKL on nebbiolo2

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This page was generated on 2024-04-17 11:36:05 -0400 (Wed, 17 Apr 2024).

Hostname	OS	Arch (*)	R version	Installed pkgs
nebbiolo2	Linux (Ubuntu 22.04.3 LTS)	x86_64	4.3.3 (2024-02-29) -- "Angel Food Cake"	4676
palomino4	Windows Server 2022 Datacenter	x64	4.3.3 (2024-02-29 ucrt) -- "Angel Food Cake"	4414
merida1	macOS 12.7.1 Monterey	x86_64	4.3.3 (2024-02-29) -- "Angel Food Cake"	4437
Click on any hostname to see more info about the system (e.g. compilers) () as reported by 'uname -p', except on Windows and Mac OS X*

~~mAPKL 1.32.0~~ (landing page)
Argiris Sakellariou

Snapshot Date: 2024-04-15 14:05:01 -0400 (Mon, 15 Apr 2024)

git_url: https://git.bioconductor.org/packages/mAPKL

git_branch: RELEASE_3_18

git_last_commit: b2b6b36

git_last_commit_date: 2023-10-24 10:41:04 -0400 (Tue, 24 Oct 2023)

nebbiolo2

Linux (Ubuntu 22.04.3 LTS) / x86_64

ERROR

skipped

palomino4

Windows Server 2022 Datacenter / x64

ERROR

skipped

merida1

macOS 12.7.1 Monterey / x86_64

ERROR

skipped

kjohnson1

macOS 13.6.1 Ventura / arm64

see weekly results here

BUILD results for mAPKL on nebbiolo2

To the developers/maintainers of the mAPKL package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/mAPKL.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results

Summary

Package: mAPKL

Version: 1.32.0

Command: /home/biocbuild/bbs-3.18-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data mAPKL

StartedAt: 2024-04-15 17:45:59 -0400 (Mon, 15 Apr 2024)

EndedAt: 2024-04-15 17:46:24 -0400 (Mon, 15 Apr 2024)

EllapsedTime: 24.5 seconds

RetCode: 1

Status: ERROR

PackageFile: None

PackageFileSize: NA

Command output

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###
### Running command:
###
###   /home/biocbuild/bbs-3.18-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data mAPKL
###
##############################################################################
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* checking for file ‘mAPKL/DESCRIPTION’ ... OK
* preparing ‘mAPKL’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘mAPKL.Rnw’ using knitr

Quitting from lines  at lines 87-92 [unnamed-chunk-1] (mAPKL.Rnw)
Error: processing vignette 'mAPKL.Rnw' failed with diagnostics:
cannot xtfrm data frames
--- failed re-building ‘mAPKL.Rnw’

SUMMARY: processing the following file failed:
  ‘mAPKL.Rnw’

Error: Vignette re-building failed.
Execution halted