Alexander Blume
| Snapshot Date: 2023-11-01 14:05:06 -0400 (Wed, 01 Nov 2023) |
| git_url: https://git.bioconductor.org/packages/fastseg |
| git_branch: RELEASE_3_18 |
| git_last_commit: fc54ac5 |
| git_last_commit_date: 2023-10-24 09:48:50 -0400 (Tue, 24 Oct 2023) |
| Back to Multiple platform build/check report for BioC 3.18: simplified long |
|
This page was generated on 2023-11-02 11:40:40 -0400 (Thu, 02 Nov 2023).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 22.04.2 LTS) | x86_64 | 4.3.1 (2023-06-16) -- "Beagle Scouts" | 4729 |
| palomino4 | Windows Server 2022 Datacenter | x64 | 4.3.1 (2023-06-16 ucrt) -- "Beagle Scouts" | 4463 |
| lconway | macOS 12.6.5 Monterey | x86_64 | 4.3.1 Patched (2023-06-17 r84564) -- "Beagle Scouts" | 4478 |
| kunpeng2 | Linux (openEuler 22.03 LTS-SP1) | aarch64 | 4.3.1 (2023-06-16) -- "Beagle Scouts" | 4464 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 694/2266 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| fastseg 1.48.0 (landing page) Alexander Blume
| nebbiolo2 | Linux (Ubuntu 22.04.2 LTS) / x86_64 | OK | OK | OK | | ||||||||
| palomino4 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | | ||||||||
| lconway | macOS 12.6.5 Monterey / x86_64 | OK | OK | OK | OK | | ||||||||
| kjohnson1 | macOS 13.6.1 Ventura / arm64 | see weekly results here | ||||||||||||
| kunpeng2 | Linux (openEuler 22.03 LTS-SP1) / aarch64 | OK | OK | OK | ||||||||||
|
To the developers/maintainers of the fastseg package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/fastseg.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. - See Martin Grigorov's blog post for how to debug Linux ARM64 related issues on a x86_64 host. |
| Package: fastseg |
| Version: 1.48.0 |
| Command: /home/biocbuild/R/R-4.3.1/bin/R CMD INSTALL fastseg |
| StartedAt: 2023-11-01 20:11:33 -0000 (Wed, 01 Nov 2023) |
| EndedAt: 2023-11-01 20:12:02 -0000 (Wed, 01 Nov 2023) |
| EllapsedTime: 29.2 seconds |
| RetCode: 0 |
| Status: OK |
##############################################################################
##############################################################################
###
### Running command:
###
### /home/biocbuild/R/R-4.3.1/bin/R CMD INSTALL fastseg
###
##############################################################################
##############################################################################
* installing to library ‘/home/biocbuild/R/R-4.3.1/site-library’
* installing *source* package ‘fastseg’ ...
** using staged installation
** libs
using C compiler: ‘gcc (GCC) 10.3.1’
using C++ compiler: ‘g++ (GCC) 10.3.1’
gcc -I"/home/biocbuild/R/R-4.3.1/include" -DNDEBUG -I/usr/local/include -fPIC -g -O2 -Wall -c R_init_fastseg.c -o R_init_fastseg.o
g++ -std=gnu++17 -I"/home/biocbuild/R/R-4.3.1/include" -DNDEBUG -I/usr/local/include -fPIC -g -O2 -Wall -c segment.cpp -o segment.o
segment.cpp: In function ‘SEXPREC* segment(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)’:
segment.cpp:60:20: warning: variable ‘globalSd’ set but not used [-Wunused-but-set-variable]
60 | double globalMean,globalSd,diff,M2,globalVariance;
| ^~~~~~~~
segment.cpp:61:9: warning: variable ‘oldStatistic’ set but not used [-Wunused-but-set-variable]
61 | double oldStatistic, meanLeft,meanRight,varLeft,varRight;
| ^~~~~~~~~~~~
segment.cpp:62:31: warning: variable ‘maxStatistic’ set but not used [-Wunused-but-set-variable]
62 | double newStatistic,meanDiff,maxStatistic,DOF,a,b,eps1;
| ^~~~~~~~~~~~
segment.cpp:63:40: warning: variable ‘maxIdx’ set but not used [-Wunused-but-set-variable]
63 | double newPValue, maxPValue,oldPValue,maxIdx;
| ^~~~~~
In file included from segment.cpp:10:
/home/biocbuild/R/R-4.3.1/include/Rmath.h:210:15: warning: unused variable ‘Rf_beta’ [-Wunused-variable]
210 | #define beta Rf_beta
| ^~~~~~~
segment.cpp:65:9: note: in expansion of macro ‘beta’
65 | double beta,nn;
| ^~~~
g++ -std=gnu++17 -I"/home/biocbuild/R/R-4.3.1/include" -DNDEBUG -I/usr/local/include -fPIC -g -O2 -Wall -c segmentCyberT.cpp -o segmentCyberT.o
segmentCyberT.cpp: In function ‘SEXPREC* segmentCyberT(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)’:
segmentCyberT.cpp:59:20: warning: variable ‘globalSd’ set but not used [-Wunused-but-set-variable]
59 | double globalMean,globalSd,diff,M2,globalVariance;
| ^~~~~~~~
segmentCyberT.cpp:60:9: warning: variable ‘oldStatistic’ set but not used [-Wunused-but-set-variable]
60 | double oldStatistic,meanLeft,meanRight,varLeft,varRight;
| ^~~~~~~~~~~~
segmentCyberT.cpp:61:31: warning: variable ‘maxStatistic’ set but not used [-Wunused-but-set-variable]
61 | double newStatistic,meanDiff,maxStatistic,DOF,a,b,eps1;
| ^~~~~~~~~~~~
In file included from segmentCyberT.cpp:10:
/home/biocbuild/R/R-4.3.1/include/Rmath.h:210:15: warning: unused variable ‘Rf_beta’ [-Wunused-variable]
210 | #define beta Rf_beta
| ^~~~~~~
segmentCyberT.cpp:63:50: note: in expansion of macro ‘beta’
63 | double newStatisticBptLeft,newStatisticBptRight,beta,nn;
| ^~~~
g++ -std=gnu++17 -shared -L/home/biocbuild/R/R-4.3.1/lib -L/usr/local/lib -o fastseg.so R_init_fastseg.o segment.o segmentCyberT.o -L/home/biocbuild/R/R-4.3.1/lib -lR
installing to /home/biocbuild/R/R-4.3.1/site-library/00LOCK-fastseg/00new/fastseg/libs
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (fastseg)