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This page was generated on 2024-04-17 11:36:03 -0400 (Wed, 17 Apr 2024).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 22.04.3 LTS)x86_644.3.3 (2024-02-29) -- "Angel Food Cake" 4676
palomino4Windows Server 2022 Datacenterx644.3.3 (2024-02-29 ucrt) -- "Angel Food Cake" 4414
merida1macOS 12.7.1 Montereyx86_644.3.3 (2024-02-29) -- "Angel Food Cake" 4437
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 1014/2266HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
ImmuneSpaceR 1.30.0  (landing page)
ImmuneSpace Package Maintainer
Snapshot Date: 2024-04-15 14:05:01 -0400 (Mon, 15 Apr 2024)
git_url: https://git.bioconductor.org/packages/ImmuneSpaceR
git_branch: RELEASE_3_18
git_last_commit: 597653f
git_last_commit_date: 2023-10-24 10:50:14 -0400 (Tue, 24 Oct 2023)
nebbiolo2Linux (Ubuntu 22.04.3 LTS) / x86_64  OK    ERROR  skipped
palomino4Windows Server 2022 Datacenter / x64  OK    ERROR  skippedskipped
merida1macOS 12.7.1 Monterey / x86_64  OK    ERROR  skippedskipped
kjohnson1macOS 13.6.1 Ventura / arm64see weekly results here

BUILD results for ImmuneSpaceR on nebbiolo2


To the developers/maintainers of the ImmuneSpaceR package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/ImmuneSpaceR.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results

Summary

Package: ImmuneSpaceR
Version: 1.30.0
Command: /home/biocbuild/bbs-3.18-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data ImmuneSpaceR
StartedAt: 2024-04-15 17:35:24 -0400 (Mon, 15 Apr 2024)
EndedAt: 2024-04-15 17:36:05 -0400 (Mon, 15 Apr 2024)
EllapsedTime: 41.7 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /home/biocbuild/bbs-3.18-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data ImmuneSpaceR
###
##############################################################################
##############################################################################


* checking for file ‘ImmuneSpaceR/DESCRIPTION’ ... OK
* preparing ‘ImmuneSpaceR’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘Intro_to_ImmuneSpaceR.Rmd’ using rmarkdown

Quitting from lines  at lines 68-71 [CreateConnection] (Intro_to_ImmuneSpaceR.Rmd)
Error: processing vignette 'Intro_to_ImmuneSpaceR.Rmd' failed with diagnostics:
HTTP request was unsuccessful. Status code = 500, Error message = Error on line 1: Syntax error near 'JTBBJTIwJTIwJTIwJTIwJTIwJTIwJTIwJTIwJTIwJTIwJTIwJTIwU0VMRUNUJTIwRElTVElOQ1QlMjBleHByZXNzaW9uX21hdHJpeF9hY2Nlc3Npb24lMkMlMjBjb2hvcnRfdHlwZSUwQSUyMCUyMCUyMCUyMCUyMCUyMCUyMCUyMCUyMCUyMCUyMCUyMEZST00lMjBITV9pbnB1dFNhbXBsZXNRdWVyeSUwQSUyMCUyMCUyMCUyMCUyMCUyMCUyMCUyMCUyMCUyMCUyMCUyMEdST1VQJTIwQlklMjBleHByZXNzaW9uX21hdHJpeF9hY2Nlc3Npb24lMkMlMjBjb2hvcnRfdHlwZSUwQSUyMCUyMCUyMCUyMCUyMCUyMCUyMCUyMCUyMCUyMA'
--- failed re-building ‘Intro_to_ImmuneSpaceR.Rmd’

--- re-building ‘getDataset.Rmd’ using rmarkdown

Quitting from lines  at lines 37-40 [CreateConection] (getDataset.Rmd)
Error: processing vignette 'getDataset.Rmd' failed with diagnostics:
HTTP request was unsuccessful. Status code = 500, Error message = Error on line 1: Syntax error near 'JTBBJTIwJTIwJTIwJTIwJTIwJTIwJTIwJTIwJTIwJTIwJTIwJTIwU0VMRUNUJTIwRElTVElOQ1QlMjBleHByZXNzaW9uX21hdHJpeF9hY2Nlc3Npb24lMkMlMjBjb2hvcnRfdHlwZSUwQSUyMCUyMCUyMCUyMCUyMCUyMCUyMCUyMCUyMCUyMCUyMCUyMEZST00lMjBITV9pbnB1dFNhbXBsZXNRdWVyeSUwQSUyMCUyMCUyMCUyMCUyMCUyMCUyMCUyMCUyMCUyMCUyMCUyMEdST1VQJTIwQlklMjBleHByZXNzaW9uX21hdHJpeF9hY2Nlc3Npb24lMkMlMjBjb2hvcnRfdHlwZSUwQSUyMCUyMCUyMCUyMCUyMCUyMCUyMCUyMCUyMCUyMA'
--- failed re-building ‘getDataset.Rmd’

--- re-building ‘getGEMatrix.Rmd’ using rmarkdown

Quitting from lines  at lines 38-41 [CreateConection] (getGEMatrix.Rmd)
Error: processing vignette 'getGEMatrix.Rmd' failed with diagnostics:
HTTP request was unsuccessful. Status code = 500, Error message = Error on line 1: Syntax error near 'JTBBJTIwJTIwJTIwJTIwJTIwJTIwJTIwJTIwJTIwJTIwJTIwJTIwU0VMRUNUJTIwRElTVElOQ1QlMjBleHByZXNzaW9uX21hdHJpeF9hY2Nlc3Npb24lMkMlMjBjb2hvcnRfdHlwZSUwQSUyMCUyMCUyMCUyMCUyMCUyMCUyMCUyMCUyMCUyMCUyMCUyMEZST00lMjBITV9pbnB1dFNhbXBsZXNRdWVyeSUwQSUyMCUyMCUyMCUyMCUyMCUyMCUyMCUyMCUyMCUyMCUyMCUyMEdST1VQJTIwQlklMjBleHByZXNzaW9uX21hdHJpeF9hY2Nlc3Npb24lMkMlMjBjb2hvcnRfdHlwZSUwQSUyMCUyMCUyMCUyMCUyMCUyMCUyMCUyMCUyMCUyMA'
--- failed re-building ‘getGEMatrix.Rmd’

--- re-building ‘interactiveNetrc.Rmd’ using rmarkdown
--- finished re-building ‘interactiveNetrc.Rmd’

--- re-building ‘report_SDY144.Rmd’ using rmarkdown

Quitting from lines  at lines 40-45 [unnamed-chunk-1] (report_SDY144.Rmd)
Error: processing vignette 'report_SDY144.Rmd' failed with diagnostics:
HTTP request was unsuccessful. Status code = 500, Error message = Error on line 1: Syntax error near 'JTBBJTIwJTIwJTIwJTIwJTIwJTIwJTIwJTIwJTIwJTIwJTIwJTIwU0VMRUNUJTIwRElTVElOQ1QlMjBleHByZXNzaW9uX21hdHJpeF9hY2Nlc3Npb24lMkMlMjBjb2hvcnRfdHlwZSUwQSUyMCUyMCUyMCUyMCUyMCUyMCUyMCUyMCUyMCUyMCUyMCUyMEZST00lMjBITV9pbnB1dFNhbXBsZXNRdWVyeSUwQSUyMCUyMCUyMCUyMCUyMCUyMCUyMCUyMCUyMCUyMCUyMCUyMEdST1VQJTIwQlklMjBleHByZXNzaW9uX21hdHJpeF9hY2Nlc3Npb24lMkMlMjBjb2hvcnRfdHlwZSUwQSUyMCUyMCUyMCUyMCUyMCUyMCUyMCUyMCUyMCUyMA'
--- failed re-building ‘report_SDY144.Rmd’

--- re-building ‘report_SDY180.Rmd’ using rmarkdown

Quitting from lines  at lines 57-59 [connection] (report_SDY180.Rmd)
Error: processing vignette 'report_SDY180.Rmd' failed with diagnostics:
HTTP request was unsuccessful. Status code = 500, Error message = Error on line 1: Syntax error near 'JTBBJTIwJTIwJTIwJTIwJTIwJTIwJTIwJTIwJTIwJTIwJTIwJTIwU0VMRUNUJTIwRElTVElOQ1QlMjBleHByZXNzaW9uX21hdHJpeF9hY2Nlc3Npb24lMkMlMjBjb2hvcnRfdHlwZSUwQSUyMCUyMCUyMCUyMCUyMCUyMCUyMCUyMCUyMCUyMCUyMCUyMEZST00lMjBITV9pbnB1dFNhbXBsZXNRdWVyeSUwQSUyMCUyMCUyMCUyMCUyMCUyMCUyMCUyMCUyMCUyMCUyMCUyMEdST1VQJTIwQlklMjBleHByZXNzaW9uX21hdHJpeF9hY2Nlc3Npb24lMkMlMjBjb2hvcnRfdHlwZSUwQSUyMCUyMCUyMCUyMCUyMCUyMCUyMCUyMCUyMCUyMA'
--- failed re-building ‘report_SDY180.Rmd’

--- re-building ‘report_SDY269.Rmd’ using rmarkdown

Quitting from lines  at lines 53-57 [connection] (report_SDY269.Rmd)
Error: processing vignette 'report_SDY269.Rmd' failed with diagnostics:
HTTP request was unsuccessful. Status code = 500, Error message = Error on line 1: Syntax error near 'JTBBJTIwJTIwJTIwJTIwJTIwJTIwJTIwJTIwJTIwJTIwJTIwJTIwU0VMRUNUJTIwRElTVElOQ1QlMjBleHByZXNzaW9uX21hdHJpeF9hY2Nlc3Npb24lMkMlMjBjb2hvcnRfdHlwZSUwQSUyMCUyMCUyMCUyMCUyMCUyMCUyMCUyMCUyMCUyMCUyMCUyMEZST00lMjBITV9pbnB1dFNhbXBsZXNRdWVyeSUwQSUyMCUyMCUyMCUyMCUyMCUyMCUyMCUyMCUyMCUyMCUyMCUyMEdST1VQJTIwQlklMjBleHByZXNzaW9uX21hdHJpeF9hY2Nlc3Npb24lMkMlMjBjb2hvcnRfdHlwZSUwQSUyMCUyMCUyMCUyMCUyMCUyMCUyMCUyMCUyMCUyMA'
--- failed re-building ‘report_SDY269.Rmd’

SUMMARY: processing the following files failed:
  ‘Intro_to_ImmuneSpaceR.Rmd’ ‘getDataset.Rmd’ ‘getGEMatrix.Rmd’
  ‘report_SDY144.Rmd’ ‘report_SDY180.Rmd’ ‘report_SDY269.Rmd’

Error: Vignette re-building failed.
Execution halted