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This page was generated on 2023-10-20 09:38:12 -0400 (Fri, 20 Oct 2023).

HostnameOSArch (*)R versionInstalled pkgs
kjohnson2macOS 12.6.1 Montereyarm644.3.1 (2023-06-16) -- "Beagle Scouts" 4347
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Package 1917/2230HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
sigPathway 1.68.0  (landing page)
Weil Lai
Snapshot Date: 2023-10-15 14:00:07 -0400 (Sun, 15 Oct 2023)
git_url: https://git.bioconductor.org/packages/sigPathway
git_branch: RELEASE_3_17
git_last_commit: 9ef9f8f
git_last_commit_date: 2023-04-25 09:43:54 -0400 (Tue, 25 Apr 2023)
kjohnson2macOS 12.6.1 Monterey / arm64  ERROR    ERROR  skippedskipped

BUILD results for sigPathway on kjohnson2


To the developers/maintainers of the sigPathway package:
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: sigPathway
Version: 1.68.0
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data sigPathway
StartedAt: 2023-10-16 20:25:48 -0400 (Mon, 16 Oct 2023)
EndedAt: 2023-10-16 20:25:52 -0400 (Mon, 16 Oct 2023)
EllapsedTime: 3.5 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

##############################################################################
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###
### Running command:
###
###   /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data sigPathway
###
##############################################################################
##############################################################################


* checking for file ‘sigPathway/DESCRIPTION’ ... OK
* preparing ‘sigPathway’:
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to build vignettes
      -----------------------------------
* installing *source* package ‘sigPathway’ ...
** using staged installation
** libs
using C compiler: ‘Apple clang version 14.0.0 (clang-1400.0.29.202)’
using SDK: ‘MacOSX11.3.sdk’
clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG   -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -c calc_gene_set_internal.c -o calc_gene_set_internal.o
clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG   -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -c calc_gene_set_stat.c -o calc_gene_set_stat.o
clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG   -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -c calc_probe_stat.c -o calc_probe_stat.o
clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG   -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -c calc_weights.c -o calc_weights.o
clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG   -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -c matrix_fn.c -o matrix_fn.o
matrix_fn.c:29:41: error: too few arguments to function call, expected 15, have 13
                      x, &nrx, y, &nry, &zero, z, &nrx);
                                                      ^
/Library/Frameworks/R.framework/Resources/include/R_ext/BLAS.h:207:1: note: 'dgemm_' declared here
F77_NAME(dgemm)(const char *transa, const char *transb, const int *m,
^
/Library/Frameworks/R.framework/Resources/include/R_ext/RS.h:81:24: note: expanded from macro 'F77_NAME'
#define F77_NAME(x)    F77_CALL(x)
                       ^
/Library/Frameworks/R.framework/Resources/include/R_ext/RS.h:77:22: note: expanded from macro 'F77_CALL'
# define F77_CALL(x)    x ## _
                        ^
<scratch space>:51:1: note: expanded from here
dgemm_
^
matrix_fn.c:68:41: error: too few arguments to function call, expected 24, have 21
                   &tmp, &lwork, &itmp, &liwork, &info);
                                                      ^
/Library/Frameworks/R.framework/Resources/include/R_ext/Lapack.h:1274:1: note: 'dsyevr_' declared here
F77_NAME(dsyevr)(const char* jobz, const char* range, const char* uplo,
^
/Library/Frameworks/R.framework/Resources/include/R_ext/RS.h:81:24: note: expanded from macro 'F77_NAME'
#define F77_NAME(x)    F77_CALL(x)
                       ^
/Library/Frameworks/R.framework/Resources/include/R_ext/RS.h:77:22: note: expanded from macro 'F77_CALL'
# define F77_CALL(x)    x ## _
                        ^
<scratch space>:243:1: note: expanded from here
dsyevr_
^
matrix_fn.c:80:41: error: too few arguments to function call, expected 24, have 21
                   work, &lwork, iwork, &liwork, &info);
                                                      ^
/Library/Frameworks/R.framework/Resources/include/R_ext/Lapack.h:1274:1: note: 'dsyevr_' declared here
F77_NAME(dsyevr)(const char* jobz, const char* range, const char* uplo,
^
/Library/Frameworks/R.framework/Resources/include/R_ext/RS.h:81:24: note: expanded from macro 'F77_NAME'
#define F77_NAME(x)    F77_CALL(x)
                       ^
/Library/Frameworks/R.framework/Resources/include/R_ext/RS.h:77:22: note: expanded from macro 'F77_CALL'
# define F77_CALL(x)    x ## _
                        ^
<scratch space>:243:1: note: expanded from here
dsyevr_
^
3 errors generated.
make: *** [matrix_fn.o] Error 1
ERROR: compilation failed for package ‘sigPathway’
* removing ‘/private/tmp/RtmpaPT27P/Rinst45377b9f8361/sigPathway’
      -----------------------------------
ERROR: package installation failed