Back to Mac ARM64 build report for BioC 3.17 |
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This page was generated on 2023-10-20 09:38:12 -0400 (Fri, 20 Oct 2023).
Hostname | OS | Arch (*) | R version | Installed pkgs |
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kjohnson2 | macOS 12.6.1 Monterey | arm64 | 4.3.1 (2023-06-16) -- "Beagle Scouts" | 4347 |
Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X |
Package 1917/2230 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
Weil Lai
| kjohnson2 | macOS 12.6.1 Monterey / arm64 | ERROR | ERROR | skipped | skipped | ||||||||
To the developers/maintainers of the sigPathway package: - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
Package: sigPathway |
Version: 1.68.0 |
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data sigPathway |
StartedAt: 2023-10-16 20:25:48 -0400 (Mon, 16 Oct 2023) |
EndedAt: 2023-10-16 20:25:52 -0400 (Mon, 16 Oct 2023) |
EllapsedTime: 3.5 seconds |
RetCode: 1 |
Status: ERROR |
PackageFile: None |
PackageFileSize: NA |
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data sigPathway ### ############################################################################## ############################################################################## * checking for file ‘sigPathway/DESCRIPTION’ ... OK * preparing ‘sigPathway’: * checking DESCRIPTION meta-information ... OK * cleaning src * installing the package to build vignettes ----------------------------------- * installing *source* package ‘sigPathway’ ... ** using staged installation ** libs using C compiler: ‘Apple clang version 14.0.0 (clang-1400.0.29.202)’ using SDK: ‘MacOSX11.3.sdk’ clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c calc_gene_set_internal.c -o calc_gene_set_internal.o clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c calc_gene_set_stat.c -o calc_gene_set_stat.o clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c calc_probe_stat.c -o calc_probe_stat.o clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c calc_weights.c -o calc_weights.o clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c matrix_fn.c -o matrix_fn.o matrix_fn.c:29:41: error: too few arguments to function call, expected 15, have 13 x, &nrx, y, &nry, &zero, z, &nrx); ^ /Library/Frameworks/R.framework/Resources/include/R_ext/BLAS.h:207:1: note: 'dgemm_' declared here F77_NAME(dgemm)(const char *transa, const char *transb, const int *m, ^ /Library/Frameworks/R.framework/Resources/include/R_ext/RS.h:81:24: note: expanded from macro 'F77_NAME' #define F77_NAME(x) F77_CALL(x) ^ /Library/Frameworks/R.framework/Resources/include/R_ext/RS.h:77:22: note: expanded from macro 'F77_CALL' # define F77_CALL(x) x ## _ ^ <scratch space>:51:1: note: expanded from here dgemm_ ^ matrix_fn.c:68:41: error: too few arguments to function call, expected 24, have 21 &tmp, &lwork, &itmp, &liwork, &info); ^ /Library/Frameworks/R.framework/Resources/include/R_ext/Lapack.h:1274:1: note: 'dsyevr_' declared here F77_NAME(dsyevr)(const char* jobz, const char* range, const char* uplo, ^ /Library/Frameworks/R.framework/Resources/include/R_ext/RS.h:81:24: note: expanded from macro 'F77_NAME' #define F77_NAME(x) F77_CALL(x) ^ /Library/Frameworks/R.framework/Resources/include/R_ext/RS.h:77:22: note: expanded from macro 'F77_CALL' # define F77_CALL(x) x ## _ ^ <scratch space>:243:1: note: expanded from here dsyevr_ ^ matrix_fn.c:80:41: error: too few arguments to function call, expected 24, have 21 work, &lwork, iwork, &liwork, &info); ^ /Library/Frameworks/R.framework/Resources/include/R_ext/Lapack.h:1274:1: note: 'dsyevr_' declared here F77_NAME(dsyevr)(const char* jobz, const char* range, const char* uplo, ^ /Library/Frameworks/R.framework/Resources/include/R_ext/RS.h:81:24: note: expanded from macro 'F77_NAME' #define F77_NAME(x) F77_CALL(x) ^ /Library/Frameworks/R.framework/Resources/include/R_ext/RS.h:77:22: note: expanded from macro 'F77_CALL' # define F77_CALL(x) x ## _ ^ <scratch space>:243:1: note: expanded from here dsyevr_ ^ 3 errors generated. make: *** [matrix_fn.o] Error 1 ERROR: compilation failed for package ‘sigPathway’ * removing ‘/private/tmp/RtmpaPT27P/Rinst45377b9f8361/sigPathway’ ----------------------------------- ERROR: package installation failed