Xiuwen Zheng
| Snapshot Date: 2023-10-15 14:00:07 -0400 (Sun, 15 Oct 2023) |
| git_url: https://git.bioconductor.org/packages/SNPRelate |
| git_branch: RELEASE_3_17 |
| git_last_commit: 8a20e85 |
| git_last_commit_date: 2023-05-01 20:07:52 -0400 (Mon, 01 May 2023) |
| Back to Mac ARM64 build report for BioC 3.17 |
|
This page was generated on 2023-10-20 09:38:12 -0400 (Fri, 20 Oct 2023).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| kjohnson2 | macOS 12.6.1 Monterey | arm64 | 4.3.1 (2023-06-16) -- "Beagle Scouts" | 4347 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 1957/2230 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| SNPRelate 1.34.1 (landing page) Xiuwen Zheng
| kjohnson2 | macOS 12.6.1 Monterey / arm64 | OK | OK | OK | OK | | |||||||
|
To the developers/maintainers of the SNPRelate package: - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: SNPRelate |
| Version: 1.34.1 |
| Command: /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL SNPRelate |
| StartedAt: 2023-10-15 15:07:57 -0400 (Sun, 15 Oct 2023) |
| EndedAt: 2023-10-15 15:08:38 -0400 (Sun, 15 Oct 2023) |
| EllapsedTime: 40.6 seconds |
| RetCode: 0 |
| Status: OK |
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL SNPRelate ### ############################################################################## ############################################################################## * installing to library ‘/Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library’ * installing *source* package ‘SNPRelate’ ... ** using staged installation ** libs using C compiler: ‘Apple clang version 14.0.0 (clang-1400.0.29.202)’ using C++ compiler: ‘Apple clang version 14.0.0 (clang-1400.0.29.202)’ using SDK: ‘MacOSX11.3.sdk’ clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DUSING_R -DUSE_FC_LEN_T -I. -I'/Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/gdsfmt/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c ConvToGDS.cpp -o ConvToGDS.o clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DUSING_R -DUSE_FC_LEN_T -I. -I'/Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/gdsfmt/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c R_SNPRelate.c -o R_SNPRelate.o clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DUSING_R -DUSE_FC_LEN_T -I. -I'/Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/gdsfmt/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c SNPRelate.cpp -o SNPRelate.o clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DUSING_R -DUSE_FC_LEN_T -I. -I'/Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/gdsfmt/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c ThreadPool.cpp -o ThreadPool.o clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DUSING_R -DUSE_FC_LEN_T -I. -I'/Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/gdsfmt/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c dGenGWAS.cpp -o dGenGWAS.o clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DUSING_R -DUSE_FC_LEN_T -I. -I'/Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/gdsfmt/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c dVect.cpp -o dVect.o clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DUSING_R -DUSE_FC_LEN_T -I. -I'/Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/gdsfmt/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c genBeta.cpp -o genBeta.o clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DUSING_R -DUSE_FC_LEN_T -I. -I'/Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/gdsfmt/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c genEIGMIX.cpp -o genEIGMIX.o clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DUSING_R -DUSE_FC_LEN_T -I. -I'/Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/gdsfmt/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c genFst.cpp -o genFst.o clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DUSING_R -DUSE_FC_LEN_T -I. -I'/Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/gdsfmt/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c genHWE.cpp -o genHWE.o clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DUSING_R -DUSE_FC_LEN_T -I. -I'/Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/gdsfmt/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c genIBD.cpp -o genIBD.o clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DUSING_R -DUSE_FC_LEN_T -I. -I'/Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/gdsfmt/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c genIBS.cpp -o genIBS.o clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DUSING_R -DUSE_FC_LEN_T -I. -I'/Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/gdsfmt/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c genKING.cpp -o genKING.o clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DUSING_R -DUSE_FC_LEN_T -I. -I'/Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/gdsfmt/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c genLD.cpp -o genLD.o clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DUSING_R -DUSE_FC_LEN_T -I. -I'/Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/gdsfmt/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c genPCA.cpp -o genPCA.o clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DUSING_R -DUSE_FC_LEN_T -I. -I'/Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/gdsfmt/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c genSlideWin.cpp -o genSlideWin.o clang++ -arch arm64 -std=gnu++17 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/opt/R/arm64/lib -o SNPRelate.so ConvToGDS.o R_SNPRelate.o SNPRelate.o ThreadPool.o dGenGWAS.o dVect.o genBeta.o genEIGMIX.o genFst.o genHWE.o genIBD.o genIBS.o genKING.o genLD.o genPCA.o genSlideWin.o -lpthread -L/Library/Frameworks/R.framework/Resources/lib -lRlapack -L/Library/Frameworks/R.framework/Resources/lib -lRblas -L/opt/gfortran/lib/gcc/aarch64-apple-darwin20.0/12.2.0 -L/opt/gfortran/lib -lgfortran -lemutls_w -lquadmath -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation ld: warning: could not create compact unwind for ___emutls_get_address: registers 23 and 24 not saved contiguously in frame installing to /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/00LOCK-SNPRelate/00new/SNPRelate/libs ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (SNPRelate)