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This page was generated on 2023-10-20 09:38:10 -0400 (Fri, 20 Oct 2023).

HostnameOSArch (*)R versionInstalled pkgs
kjohnson2macOS 12.6.1 Montereyarm644.3.1 (2023-06-16) -- "Beagle Scouts" 4347
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 1663/2230HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
ReactomeGSA 1.14.0  (landing page)
Johannes Griss
Snapshot Date: 2023-10-15 14:00:07 -0400 (Sun, 15 Oct 2023)
git_url: https://git.bioconductor.org/packages/ReactomeGSA
git_branch: RELEASE_3_17
git_last_commit: 559760b
git_last_commit_date: 2023-04-25 11:12:26 -0400 (Tue, 25 Apr 2023)
kjohnson2macOS 12.6.1 Monterey / arm64  OK    OK    OK    OK  UNNEEDED, same version is already published

BUILD BIN results for ReactomeGSA on kjohnson2


To the developers/maintainers of the ReactomeGSA package:
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results

Summary

Package: ReactomeGSA
Version: 1.14.0
Command: rm -rf ReactomeGSA.buildbin-libdir && mkdir ReactomeGSA.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh ReactomeGSA_1.14.0.tar.gz /Library/Frameworks/R.framework/Resources/bin/R ReactomeGSA.buildbin-libdir
StartedAt: 2023-10-19 16:17:50 -0400 (Thu, 19 Oct 2023)
EndedAt: 2023-10-19 16:18:08 -0400 (Thu, 19 Oct 2023)
EllapsedTime: 17.6 seconds
RetCode: 0
Status:   OK  
PackageFile: ReactomeGSA_1.14.0.tgz
PackageFileSize: 547.3 KiB

Command output

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### Running command:
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###   rm -rf ReactomeGSA.buildbin-libdir && mkdir ReactomeGSA.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh ReactomeGSA_1.14.0.tar.gz /Library/Frameworks/R.framework/Resources/bin/R ReactomeGSA.buildbin-libdir
###
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>>>>>>> 
>>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=ReactomeGSA.buildbin-libdir ReactomeGSA_1.14.0.tar.gz'
>>>>>>> 

* installing *source* package ‘ReactomeGSA’ ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
in method for ‘analyse_sc_clusters’ with signature ‘object="Seurat"’: no definition for class “Seurat”
in method for ‘analyse_sc_clusters’ with signature ‘object="SingleCellExperiment"’: no definition for class “SingleCellExperiment”
in method for ‘add_dataset’ with signature ‘request="ReactomeAnalysisRequest",expression_values="EList"’: no definition for class “EList”
in method for ‘add_dataset’ with signature ‘request="ReactomeAnalysisRequest",expression_values="DGEList"’: no definition for class “DGEList”
in method for ‘add_dataset’ with signature ‘request="ReactomeAnalysisRequest",expression_values="ExpressionSet"’: no definition for class “ExpressionSet”
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (ReactomeGSA)