Greg Finak
| Snapshot Date: 2023-02-27 13:00:05 -0500 (Mon, 27 Feb 2023) |
| git_url: https://git.bioconductor.org/packages/MIMOSA |
| git_branch: master |
| git_last_commit: 4a029fc |
| git_last_commit_date: 2022-11-01 11:09:12 -0500 (Tue, 01 Nov 2022) |
| Back to Mac ARM64 build report for BioC 3.17 |
|
This page was generated on 2023-03-02 11:01:33 -0500 (Thu, 02 Mar 2023).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| kjohnson2 | macOS 12.6.1 Monterey | arm64 | R Under development (unstable) (2023-01-10 r83596) -- "Unsuffered Consequences" | 3763 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
|
To the developers/maintainers of the MIMOSA package: Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 1193/2171 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| MIMOSA 1.37.0 (landing page) Greg Finak
| kjohnson2 | macOS 12.6.1 Monterey / arm64 | OK | OK | WARNINGS | OK | | |||||||
| Package: MIMOSA |
| Version: 1.37.0 |
| Command: rm -rf MIMOSA.buildbin-libdir && mkdir MIMOSA.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh MIMOSA_1.37.0.tar.gz /Library/Frameworks/R.framework/Resources/bin/R MIMOSA.buildbin-libdir |
| StartedAt: 2023-03-01 06:24:39 -0500 (Wed, 01 Mar 2023) |
| EndedAt: 2023-03-01 06:25:54 -0500 (Wed, 01 Mar 2023) |
| EllapsedTime: 74.8 seconds |
| RetCode: 0 |
| Status: OK |
| PackageFile: MIMOSA_1.37.0.tgz |
| PackageFileSize: 595.7 KiB |
############################################################################## ############################################################################## ### ### Running command: ### ### rm -rf MIMOSA.buildbin-libdir && mkdir MIMOSA.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh MIMOSA_1.37.0.tar.gz /Library/Frameworks/R.framework/Resources/bin/R MIMOSA.buildbin-libdir ### ############################################################################## ############################################################################## >>>>>>> >>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=MIMOSA.buildbin-libdir MIMOSA_1.37.0.tar.gz' >>>>>>> * installing *source* package ‘MIMOSA’ ... ** using staged installation ** libs using C compiler: ‘Apple clang version 14.0.0 (clang-1400.0.29.202)’ using C++ compiler: ‘Apple clang version 14.0.0 (clang-1400.0.29.202)’ using SDK: ‘MacOSX13.0.sdk’ clang++ -arch arm64 -std=gnu++14 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/RcppArmadillo/include' -I/opt/R/arm64/include `/Library/Frameworks/R.framework/Resources/bin/Rscript -e "RcppArmadillo:::CxxFlags()"` -fPIC -falign-functions=64 -Wall -g -O2 -c BetaMix.cpp -o BetaMix.o clang++ -arch arm64 -std=gnu++14 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/RcppArmadillo/include' -I/opt/R/arm64/include `/Library/Frameworks/R.framework/Resources/bin/Rscript -e "RcppArmadillo:::CxxFlags()"` -fPIC -falign-functions=64 -Wall -g -O2 -c MCMC.cpp -o MCMC.o clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/RcppArmadillo/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c MIMOSA_init.c -o MIMOSA_init.o clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/RcppArmadillo/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c betaintegral.c -o betaintegral.o clang++ -arch arm64 -std=gnu++14 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/RcppArmadillo/include' -I/opt/R/arm64/include `/Library/Frameworks/R.framework/Resources/bin/Rscript -e "RcppArmadillo:::CxxFlags()"` -fPIC -falign-functions=64 -Wall -g -O2 -c betaintegralRcpp.cpp -o betaintegralRcpp.o clang++ -arch arm64 -std=gnu++14 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/opt/R/arm64/lib -o MIMOSA.so BetaMix.o MCMC.o MIMOSA_init.o betaintegral.o betaintegralRcpp.o -O3 -lm -lstdc++ -I"/Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/RcppArmadillo/include" -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation ld: warning: -undefined dynamic_lookup may not work with chained fixups installing to /Users/biocbuild/bbs-3.17-bioc-mac-arm64/meat/MIMOSA.buildbin-libdir/00LOCK-MIMOSA/00new/MIMOSA/libs ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (MIMOSA) >>>>>>> >>>>>>> FIXING LINKS FOR MIMOSA.buildbin-libdir/MIMOSA/libs/MIMOSA.so >>>>>>> install_name_tool -change "/opt/R/arm64/lib/libgcc_s.1.1.dylib" "/Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/lib/libgcc_s.1.1.dylib" "MIMOSA.buildbin-libdir/MIMOSA/libs/MIMOSA.so" install_name_tool -change "/opt/R/arm64/lib/libgfortran.5.dylib" "/Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/lib/libgfortran.5.dylib" "MIMOSA.buildbin-libdir/MIMOSA/libs/MIMOSA.so" install_name_tool -change "/opt/R/arm64/lib/libquadmath.0.dylib" "/Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/lib/libquadmath.0.dylib" "MIMOSA.buildbin-libdir/MIMOSA/libs/MIMOSA.so"