Back to Mac ARM64 build report for BioC 3.17 |
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This page was generated on 2023-10-20 09:37:58 -0400 (Fri, 20 Oct 2023).
Hostname | OS | Arch (*) | R version | Installed pkgs |
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kjohnson2 | macOS 12.6.1 Monterey | arm64 | 4.3.1 (2023-06-16) -- "Beagle Scouts" | 4347 |
Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X |
Package 157/2230 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
BGmix 1.60.0 (landing page) Alex Lewin
| kjohnson2 | macOS 12.6.1 Monterey / arm64 | ERROR | ERROR | skipped | skipped | ||||||||
To the developers/maintainers of the BGmix package: - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
Package: BGmix |
Version: 1.60.0 |
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL BGmix |
StartedAt: 2023-10-15 15:06:49 -0400 (Sun, 15 Oct 2023) |
EndedAt: 2023-10-15 15:07:02 -0400 (Sun, 15 Oct 2023) |
EllapsedTime: 12.6 seconds |
RetCode: 1 |
Status: ERROR |
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL BGmix ### ############################################################################## ############################################################################## * installing to library ‘/Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library’ * installing *source* package ‘BGmix’ ... ** using staged installation checking for gcc... clang -arch arm64 checking for C compiler default output file name... a.out checking whether the C compiler works... yes checking whether we are cross compiling... no checking for suffix of executables... checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether clang -arch arm64 accepts -g... yes checking for clang -arch arm64 option to accept ISO C89... none needed checking for clang -arch arm64 option to accept ISO C99... none needed checking for cos in -lm... yes Untarring Boost header files... checking for an ANSI C-conforming const... yes checking for inline... inline configure: creating ./config.status config.status: creating src/Makevars ** libs using C++ compiler: ‘Apple clang version 14.0.0 (clang-1400.0.29.202)’ using SDK: ‘MacOSX11.3.sdk’ clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I ../boostIncl -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -falign-functions=64 -Wall -g -O2 -DUSING_R -c BGmix_main.cpp -o BGmix_main.o In file included from BGmix_main.cpp:25: In file included from ./updates_BGmix.h:1: In file included from ./rand.hh:32: In file included from ../boostIncl/boost/random.hpp:70: ../boostIncl/boost/random/uniform_on_sphere.hpp:55:25: error: no member named 'bind2nd' in namespace 'std' std::bind2nd(std::divides<RealType>(), sqrt(sqsum))); ~~~~~^ 1 error generated. make: *** [BGmix_main.o] Error 1 ERROR: compilation failed for package ‘BGmix’ * removing ‘/Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/BGmix’