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This page was generated on 2022-07-07 11:11:36 -0400 (Thu, 07 Jul 2022).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 20.04.4 LTS)x86_644.2.0 Patched (2022-06-02 r82447) -- "Vigorous Calisthenics" 4343
palomino4Windows Server 2022 Datacenterx644.2.0 Patched (2022-06-02 r82447 ucrt) -- "Vigorous Calisthenics" 4148
lconwaymacOS 12.2.1 Montereyx86_644.2.0 Patched (2022-05-29 r82424) -- "Vigorous Calisthenics" 4160
kjohnsonmacOS 12.4 Montereyarm644.2.0 Patched (2022-06-09 r82473) -- "Vigorous Calisthenics" 3115
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

BUILD results for ndexr on kjohnson


To the developers/maintainers of the ndexr package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/ndexr.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 1300/2124HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
ndexr 1.19.0  (landing page)
Florian Auer
Snapshot Date: 2022-07-06 14:00:06 -0400 (Wed, 06 Jul 2022)
git_url: https://git.bioconductor.org/packages/ndexr
git_branch: master
git_last_commit: 61b506a
git_last_commit_date: 2022-04-26 11:41:07 -0400 (Tue, 26 Apr 2022)
nebbiolo2Linux (Ubuntu 20.04.4 LTS) / x86_64  OK    ERROR  skipped
palomino4Windows Server 2022 Datacenter / x64  OK    ERROR  skippedskipped
lconwaymacOS 12.2.1 Monterey / x86_64  OK    ERROR  skippedskipped
kjohnsonmacOS 12.4 Monterey / arm64  OK    ERROR  skippedskipped

Summary

Package: ndexr
Version: 1.19.0
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data ndexr
StartedAt: 2022-07-07 00:59:38 -0400 (Thu, 07 Jul 2022)
EndedAt: 2022-07-07 00:59:51 -0400 (Thu, 07 Jul 2022)
EllapsedTime: 13.3 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

##############################################################################
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### Running command:
###
###   /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data ndexr
###
##############################################################################
##############################################################################


* checking for file ‘ndexr/DESCRIPTION’ ... OK
* preparing ‘ndexr’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘ndexr-vignette.Rmd’ using rmarkdown
Loading required package: igraph

Attaching package: 'igraph'

The following objects are masked from 'package:stats':

    decompose, spectrum

The following object is masked from 'package:base':

    union

Loading required package: RCX
Registered S3 method overwritten by 'ndexr':
  method    from
  print.RCX RCX 
Quitting from lines 80-98 (ndexr-vignette.Rmd) 
Error: processing vignette 'ndexr-vignette.Rmd' failed with diagnostics:
::
  Elements of "appliesTo" and "view" (in createCyVisualProperty) must not contain duplicates!tools
  Elements of "appliesTo" and "view" (in createCyVisualProperty) must not contain duplicates!buildVignettes
  Elements of "appliesTo" and "view" (in createCyVisualProperty) must not contain duplicates!
--- failed re-building ‘ndexr-vignette.Rmd’

SUMMARY: processing the following file failed:
  ‘ndexr-vignette.Rmd’

Error: Vignette re-building failed.
Execution halted