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This page was generated on 2022-07-07 11:11:28 -0400 (Thu, 07 Jul 2022).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 20.04.4 LTS)x86_644.2.0 Patched (2022-06-02 r82447) -- "Vigorous Calisthenics" 4343
palomino4Windows Server 2022 Datacenterx644.2.0 Patched (2022-06-02 r82447 ucrt) -- "Vigorous Calisthenics" 4148
lconwaymacOS 12.2.1 Montereyx86_644.2.0 Patched (2022-05-29 r82424) -- "Vigorous Calisthenics" 4160
kjohnsonmacOS 12.4 Montereyarm644.2.0 Patched (2022-06-09 r82473) -- "Vigorous Calisthenics" 3115
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

BUILD results for metabolomicsWorkbenchR on kjohnson


To the developers/maintainers of the metabolomicsWorkbenchR package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/metabolomicsWorkbenchR.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 1114/2124HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
metabolomicsWorkbenchR 1.7.0  (landing page)
Gavin Rhys Lloyd
Snapshot Date: 2022-07-06 14:00:06 -0400 (Wed, 06 Jul 2022)
git_url: https://git.bioconductor.org/packages/metabolomicsWorkbenchR
git_branch: master
git_last_commit: e9b7d17
git_last_commit_date: 2022-04-27 04:34:46 -0400 (Wed, 27 Apr 2022)
nebbiolo2Linux (Ubuntu 20.04.4 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
palomino4Windows Server 2022 Datacenter / x64  OK    OK    OK    OK  UNNEEDED, same version is already published
lconwaymacOS 12.2.1 Monterey / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published
kjohnsonmacOS 12.4 Monterey / arm64  OK    ERROR  skippedskipped

Summary

Package: metabolomicsWorkbenchR
Version: 1.7.0
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data metabolomicsWorkbenchR
StartedAt: 2022-07-06 23:57:35 -0400 (Wed, 06 Jul 2022)
EndedAt: 2022-07-06 23:59:53 -0400 (Wed, 06 Jul 2022)
EllapsedTime: 138.3 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

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### Running command:
###
###   /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data metabolomicsWorkbenchR
###
##############################################################################
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* checking for file ‘metabolomicsWorkbenchR/DESCRIPTION’ ... OK
* preparing ‘metabolomicsWorkbenchR’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘Introduction_to_metabolomicsWorkbenchR.Rmd’ using rmarkdown
--- finished re-building ‘Introduction_to_metabolomicsWorkbenchR.Rmd’

--- re-building ‘example_using_structToolbox.Rmd’ using rmarkdown
Quitting from lines 125-143 (example_using_structToolbox.Rmd) 
Error: processing vignette 'example_using_structToolbox.Rmd' failed with diagnostics:
invalid class "mv_feature_filter" object: The required package "pmp" is not installed.
--- failed re-building ‘example_using_structToolbox.Rmd’

SUMMARY: processing the following file failed:
  ‘example_using_structToolbox.Rmd’

Error: Vignette re-building failed.
Execution halted