Benjamin Callahan
| Snapshot Date: 2022-07-06 14:00:06 -0400 (Wed, 06 Jul 2022) |
| git_url: https://git.bioconductor.org/packages/dada2 |
| git_branch: master |
| git_last_commit: 6173c7f |
| git_last_commit_date: 2022-04-26 11:29:38 -0400 (Tue, 26 Apr 2022) |
| Back to Multiple platform build/check report for BioC 3.16 |
|
This page was generated on 2022-07-07 11:10:59 -0400 (Thu, 07 Jul 2022).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 20.04.4 LTS) | x86_64 | 4.2.0 Patched (2022-06-02 r82447) -- "Vigorous Calisthenics" | 4343 |
| palomino4 | Windows Server 2022 Datacenter | x64 | 4.2.0 Patched (2022-06-02 r82447 ucrt) -- "Vigorous Calisthenics" | 4148 |
| lconway | macOS 12.2.1 Monterey | x86_64 | 4.2.0 Patched (2022-05-29 r82424) -- "Vigorous Calisthenics" | 4160 |
| kjohnson | macOS 12.4 Monterey | arm64 | 4.2.0 Patched (2022-06-09 r82473) -- "Vigorous Calisthenics" | 3115 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
|
To the developers/maintainers of the dada2 package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/dada2.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 459/2124 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| dada2 1.25.0 (landing page) Benjamin Callahan
| nebbiolo2 | Linux (Ubuntu 20.04.4 LTS) / x86_64 | OK | OK | OK | | ||||||||
| palomino4 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | | ||||||||
| lconway | macOS 12.2.1 Monterey / x86_64 | OK | OK | OK | OK | | ||||||||
| kjohnson | macOS 12.4 Monterey / arm64 | ERROR | ERROR | skipped | skipped | |||||||||
| Package: dada2 |
| Version: 1.25.0 |
| Command: /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data dada2 |
| StartedAt: 2022-07-06 19:59:58 -0400 (Wed, 06 Jul 2022) |
| EndedAt: 2022-07-06 20:00:10 -0400 (Wed, 06 Jul 2022) |
| EllapsedTime: 11.4 seconds |
| RetCode: 1 |
| Status: ERROR |
| PackageFile: None |
| PackageFileSize: NA |
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###
### Running command:
###
### /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data dada2
###
##############################################################################
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* checking for file ‘dada2/DESCRIPTION’ ... OK
* preparing ‘dada2’:
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to build vignettes
-----------------------------------
* installing *source* package ‘dada2’ ...
** using staged installation
** libs
clang++ -arch arm64 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Library/Frameworks/R.framework/Versions/4.2-arm64/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.2-arm64/Resources/library/RcppParallel/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c RcppExports.cpp -o RcppExports.o
In file included from RcppExports.cpp:4:
In file included from ./../inst/include/dada2.h:7:
./../inst/include/dada2_RcppExports.h:14:14: warning: unused function 'validateSignature' [-Wunused-function]
void validateSignature(const char* sig) {
^
1 warning generated.
clang++ -arch arm64 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Library/Frameworks/R.framework/Versions/4.2-arm64/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.2-arm64/Resources/library/RcppParallel/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c Rmain.cpp -o Rmain.o
In file included from Rmain.cpp:7:
/Library/Developer/CommandLineTools/usr/lib/clang/13.1.6/include/cpuid.h:14:2: error: this header is for x86 only
#error this header is for x86 only
^
/Library/Developer/CommandLineTools/usr/lib/clang/13.1.6/include/cpuid.h:286:5: error: invalid output constraint '=a' in asm
__cpuid(__leaf, __eax, __ebx, __ecx, __edx);
^
/Library/Developer/CommandLineTools/usr/lib/clang/13.1.6/include/cpuid.h:251:11: note: expanded from macro '__cpuid'
: "=a"(__eax), "=r" (__ebx), "=c"(__ecx), "=d"(__edx) \
^
/Library/Developer/CommandLineTools/usr/lib/clang/13.1.6/include/cpuid.h:301:5: error: invalid output constraint '=a' in asm
__cpuid(__leaf, *__eax, *__ebx, *__ecx, *__edx);
^
/Library/Developer/CommandLineTools/usr/lib/clang/13.1.6/include/cpuid.h:251:11: note: expanded from macro '__cpuid'
: "=a"(__eax), "=r" (__ebx), "=c"(__ecx), "=d"(__edx) \
^
/Library/Developer/CommandLineTools/usr/lib/clang/13.1.6/include/cpuid.h:315:5: error: invalid output constraint '=a' in asm
__cpuid_count(__leaf, __subleaf, *__eax, *__ebx, *__ecx, *__edx);
^
/Library/Developer/CommandLineTools/usr/lib/clang/13.1.6/include/cpuid.h:258:11: note: expanded from macro '__cpuid_count'
: "=a"(__eax), "=r" (__ebx), "=c"(__ecx), "=d"(__edx) \
^
Rmain.cpp:9:3: error: invalid output constraint '=a' in asm
__cpuid_count(InfoType, 0, info[0], info[1], info[2], info[3]);
^
/Library/Developer/CommandLineTools/usr/lib/clang/13.1.6/include/cpuid.h:258:11: note: expanded from macro '__cpuid_count'
: "=a"(__eax), "=r" (__ebx), "=c"(__ecx), "=d"(__edx) \
^
Rmain.cpp:82:8: warning: variable 'HW_SSE3' set but not used [-Wunused-but-set-variable]
bool HW_SSE3 = false;
^
1 warning and 5 errors generated.
make: *** [Rmain.o] Error 1
ERROR: compilation failed for package ‘dada2’
* removing ‘/private/tmp/Rtmp6sZ9ad/Rinstd000a18dfed/dada2’
-----------------------------------
ERROR: package installation failed