| Back to Multiple platform build/check report for BioC 3.16 |
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This page was generated on 2022-07-07 11:11:19 -0400 (Thu, 07 Jul 2022).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 20.04.4 LTS) | x86_64 | 4.2.0 Patched (2022-06-02 r82447) -- "Vigorous Calisthenics" | 4343 |
| palomino4 | Windows Server 2022 Datacenter | x64 | 4.2.0 Patched (2022-06-02 r82447 ucrt) -- "Vigorous Calisthenics" | 4148 |
| lconway | macOS 12.2.1 Monterey | x86_64 | 4.2.0 Patched (2022-05-29 r82424) -- "Vigorous Calisthenics" | 4160 |
| kjohnson | macOS 12.4 Monterey | arm64 | 4.2.0 Patched (2022-06-09 r82473) -- "Vigorous Calisthenics" | 3115 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
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To the developers/maintainers of the InteractiveComplexHeatmap package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/InteractiveComplexHeatmap.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 956/2124 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| InteractiveComplexHeatmap 1.5.0 (landing page) Zuguang Gu
| nebbiolo2 | Linux (Ubuntu 20.04.4 LTS) / x86_64 | OK | OK | OK |  | ||||||||
| palomino4 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | | ||||||||
| lconway | macOS 12.2.1 Monterey / x86_64 | OK | OK | OK | OK | | ||||||||
| kjohnson | macOS 12.4 Monterey / arm64 | OK | ERROR | skipped | skipped | |||||||||
| Package: InteractiveComplexHeatmap |
| Version: 1.5.0 |
| Command: /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data InteractiveComplexHeatmap |
| StartedAt: 2022-07-06 23:01:43 -0400 (Wed, 06 Jul 2022) |
| EndedAt: 2022-07-06 23:02:15 -0400 (Wed, 06 Jul 2022) |
| EllapsedTime: 31.6 seconds |
| RetCode: 1 |
| Status: ERROR |
| PackageFile: None |
| PackageFileSize: NA |
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### Running command:
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### /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data InteractiveComplexHeatmap
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* checking for file ‘InteractiveComplexHeatmap/DESCRIPTION’ ... OK
* preparing ‘InteractiveComplexHeatmap’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘InteractiveComplexHeatmap.Rmd’ using rmarkdown
Warning: The vignette title specified in \VignetteIndexEntry{} is different from the title in the YAML metadata. The former is "1. How to visualize heatmaps interactively", and the latter is "How to visualize complex heatmaps interactively". If that is intentional, you may set options(rmarkdown.html_vignette.check_title = FALSE) to suppress this check.
--- finished re-building ‘InteractiveComplexHeatmap.Rmd’
--- re-building ‘decoration.Rmd’ using rmarkdown
Warning: The vignette title specified in \VignetteIndexEntry{} is different from the title in the YAML metadata. The former is "4. Decorations on heatmaps", and the latter is "Decorations on heatmaps". If that is intentional, you may set options(rmarkdown.html_vignette.check_title = FALSE) to suppress this check.
--- finished re-building ‘decoration.Rmd’
--- re-building ‘deseq2_app.Rmd’ using rmarkdown
Warning: The vignette title specified in \VignetteIndexEntry{} is different from the title in the YAML metadata. The former is "6. A Shiny app for visualizing DESeq2 results", and the latter is "A Shiny app for visualizing DESeq2 results". If that is intentional, you may set options(rmarkdown.html_vignette.check_title = FALSE) to suppress this check.
--- finished re-building ‘deseq2_app.Rmd’
--- re-building ‘from_scratch.Rmd’ using rmarkdown
Warning: The vignette title specified in \VignetteIndexEntry{} is different from the title in the YAML metadata. The former is "7. Implement interactive heatmap from scratch", and the latter is "Implement interactive heatmap from scratch". If that is intentional, you may set options(rmarkdown.html_vignette.check_title = FALSE) to suppress this check.
--- finished re-building ‘from_scratch.Rmd’
--- re-building ‘implementation.Rmd’ using rmarkdown
Loading required namespace: gridtext
Warning: The vignette title specified in \VignetteIndexEntry{} is different from the title in the YAML metadata. The former is "2. How interactive complex heatmap is implemented", and the latter is "How interactive complex heatmap is implemented". If that is intentional, you may set options(rmarkdown.html_vignette.check_title = FALSE) to suppress this check.
--- finished re-building ‘implementation.Rmd’
--- re-building ‘interactivate_indirect.Rmd’ using rmarkdown
Quitting from lines 43-45 (interactivate_indirect.Rmd)
Error: processing vignette 'interactivate_indirect.Rmd' failed with diagnostics:
there is no package called 'SC3'
--- failed re-building ‘interactivate_indirect.Rmd’
--- re-building ‘share.Rmd’ using rmarkdown
Warning: The vignette title specified in \VignetteIndexEntry{} is different from the title in the YAML metadata. The former is "8. Share interactive heatmaps to collaborators", and the latter is "Share interactive heatmaps to collaborators". If that is intentional, you may set options(rmarkdown.html_vignette.check_title = FALSE) to suppress this check.
--- finished re-building ‘share.Rmd’
--- re-building ‘shiny_dev.Rmd’ using rmarkdown
Warning: The vignette title specified in \VignetteIndexEntry{} is different from the title in the YAML metadata. The former is "3. Functions for Shiny app development", and the latter is "Functions for Shiny app development". If that is intentional, you may set options(rmarkdown.html_vignette.check_title = FALSE) to suppress this check.
--- finished re-building ‘shiny_dev.Rmd’
SUMMARY: processing the following file failed:
‘interactivate_indirect.Rmd’
Error: Vignette re-building failed.
Execution halted