Shuai Guo
| Snapshot Date: 2022-07-06 14:00:06 -0400 (Wed, 06 Jul 2022) |
| git_url: https://git.bioconductor.org/packages/DeMixT |
| git_branch: master |
| git_last_commit: a85fc21 |
| git_last_commit_date: 2022-04-26 11:54:08 -0400 (Tue, 26 Apr 2022) |
| Back to Multiple platform build/check report for BioC 3.16 |
|
This page was generated on 2022-07-07 11:11:01 -0400 (Thu, 07 Jul 2022).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 20.04.4 LTS) | x86_64 | 4.2.0 Patched (2022-06-02 r82447) -- "Vigorous Calisthenics" | 4343 |
| palomino4 | Windows Server 2022 Datacenter | x64 | 4.2.0 Patched (2022-06-02 r82447 ucrt) -- "Vigorous Calisthenics" | 4148 |
| lconway | macOS 12.2.1 Monterey | x86_64 | 4.2.0 Patched (2022-05-29 r82424) -- "Vigorous Calisthenics" | 4160 |
| kjohnson | macOS 12.4 Monterey | arm64 | 4.2.0 Patched (2022-06-09 r82473) -- "Vigorous Calisthenics" | 3115 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
|
To the developers/maintainers of the DeMixT package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/DeMixT.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 499/2124 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| DeMixT 1.13.0 (landing page) Shuai Guo
| nebbiolo2 | Linux (Ubuntu 20.04.4 LTS) / x86_64 | OK | OK | WARNINGS | | ||||||||
| palomino4 | Windows Server 2022 Datacenter / x64 | OK | OK | WARNINGS | OK | | ||||||||
| lconway | macOS 12.2.1 Monterey / x86_64 | ERROR | ERROR | skipped | skipped | |||||||||
| kjohnson | macOS 12.4 Monterey / arm64 | ERROR | ERROR | skipped | skipped | |||||||||
| Package: DeMixT |
| Version: 1.13.0 |
| Command: /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data DeMixT |
| StartedAt: 2022-07-06 20:14:20 -0400 (Wed, 06 Jul 2022) |
| EndedAt: 2022-07-06 20:14:21 -0400 (Wed, 06 Jul 2022) |
| EllapsedTime: 1.1 seconds |
| RetCode: 1 |
| Status: ERROR |
| PackageFile: None |
| PackageFileSize: NA |
##############################################################################
##############################################################################
###
### Running command:
###
### /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data DeMixT
###
##############################################################################
##############################################################################
* checking for file ‘DeMixT/DESCRIPTION’ ... OK
* preparing ‘DeMixT’:
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to build vignettes
-----------------------------------
* installing *source* package ‘DeMixT’ ...
** using staged installation
** libs
clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Library/Frameworks/R.framework/Versions/4.2-arm64/Resources/library/Rcpp/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c DeMixT.c -o DeMixT.o
DeMixT.c:268:28: error: implicit declaration of function 'Rprintf' is invalid in C99 [-Werror,-Wimplicit-function-declaration]
if (nHavepi != 1) Rprintf("Iteration %d: updating parameters\n", i+1);
^
DeMixT.c:36:11: warning: variable 'st1_mu_2' set but not used [-Wunused-but-set-variable]
double *st1_mu_2, *st2_mu_2, *st1_sig_2, *st2_sig_2;
^
DeMixT.c:36:45: warning: variable 'st2_sig_2' set but not used [-Wunused-but-set-variable]
double *st1_mu_2, *st2_mu_2, *st1_sig_2, *st2_sig_2;
^
DeMixT.c:36:33: warning: variable 'st1_sig_2' set but not used [-Wunused-but-set-variable]
double *st1_mu_2, *st2_mu_2, *st1_sig_2, *st2_sig_2;
^
DeMixT.c:36:22: warning: variable 'st2_mu_2' set but not used [-Wunused-but-set-variable]
double *st1_mu_2, *st2_mu_2, *st1_sig_2, *st2_sig_2;
^
DeMixT.c:484:21: error: implicit declaration of function 'Rprintf' is invalid in C99 [-Werror,-Wimplicit-function-declaration]
if (nHavepi != 1) Rprintf("There are %d normals and %d tumors\n", fNorm,intx);
^
DeMixT.c:590:12: warning: variable 'obj_old' set but not used [-Wunused-but-set-variable]
double obj_old, obj_new;
^
DeMixT.c:590:21: warning: variable 'obj_new' set but not used [-Wunused-but-set-variable]
double obj_old, obj_new;
^
DeMixT.c:1279:21: warning: variable 'obj_new' set but not used [-Wunused-but-set-variable]
double obj_old, obj_new;
^
DeMixT.c:1279:12: warning: variable 'obj_old' set but not used [-Wunused-but-set-variable]
double obj_old, obj_new;
^
DeMixT.c:1306:9: warning: variable 'obj_old' set but not used [-Wunused-but-set-variable]
double obj_old, obj_new;
^
DeMixT.c:1306:18: warning: variable 'obj_new' set but not used [-Wunused-but-set-variable]
double obj_old, obj_new;
^
DeMixT.c:1321:21: warning: variable 'obj_new' set but not used [-Wunused-but-set-variable]
double obj_old, obj_new;
^
DeMixT.c:1321:12: warning: variable 'obj_old' set but not used [-Wunused-but-set-variable]
double obj_old, obj_new;
^
12 warnings and 2 errors generated.
make: *** [DeMixT.o] Error 1
ERROR: compilation failed for package ‘DeMixT’
* removing ‘/private/tmp/RtmpTBorCo/Rinstf727360006aa/DeMixT’
-----------------------------------
ERROR: package installation failed