Back to Multiple platform build/check report for BioC 3.16: simplified long |
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This page was generated on 2023-04-12 11:05:27 -0400 (Wed, 12 Apr 2023).
Hostname | OS | Arch (*) | R version | Installed pkgs |
---|---|---|---|---|
nebbiolo2 | Linux (Ubuntu 20.04.5 LTS) | x86_64 | 4.2.3 (2023-03-15) -- "Shortstop Beagle" | 4502 |
palomino4 | Windows Server 2022 Datacenter | x64 | 4.2.3 (2023-03-15 ucrt) -- "Shortstop Beagle" | 4282 |
lconway | macOS 12.5.1 Monterey | x86_64 | 4.2.3 (2023-03-15) -- "Shortstop Beagle" | 4310 |
Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X |
To the developers/maintainers of the CellBarcode package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/CellBarcode.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
Package 273/2183 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
CellBarcode 1.4.0 (landing page) Wenjie Sun
| nebbiolo2 | Linux (Ubuntu 20.04.5 LTS) / x86_64 | OK | OK | OK | ![]() | ||||||||
palomino4 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | ![]() | ||||||||
lconway | macOS 12.5.1 Monterey / x86_64 | OK | OK | OK | OK | ![]() | ||||||||
Package: CellBarcode |
Version: 1.4.0 |
Command: rm -rf CellBarcode.buildbin-libdir && mkdir CellBarcode.buildbin-libdir && F:\biocbuild\bbs-3.16-bioc\R\bin\R.exe CMD INSTALL --build --library=CellBarcode.buildbin-libdir CellBarcode_1.4.0.tar.gz |
StartedAt: 2023-04-11 07:42:05 -0400 (Tue, 11 Apr 2023) |
EndedAt: 2023-04-11 07:43:34 -0400 (Tue, 11 Apr 2023) |
EllapsedTime: 89.1 seconds |
RetCode: 0 |
Status: OK |
PackageFile: CellBarcode_1.4.0.zip |
PackageFileSize: 3.22 MiB |
############################################################################## ############################################################################## ### ### Running command: ### ### rm -rf CellBarcode.buildbin-libdir && mkdir CellBarcode.buildbin-libdir && F:\biocbuild\bbs-3.16-bioc\R\bin\R.exe CMD INSTALL --build --library=CellBarcode.buildbin-libdir CellBarcode_1.4.0.tar.gz ### ############################################################################## ############################################################################## * installing *source* package 'CellBarcode' ... ** using staged installation ** libs g++ -std=gnu++14 -I"F:/biocbuild/bbs-3.16-bioc/R/library/zlibbioc/include" -I"F:/biocbuild/bbs-3.16-bioc/R/include" -DNDEBUG -I'F:/biocbuild/bbs-3.16-bioc/R/library/Rcpp/include' -I'F:/biocbuild/bbs-3.16-bioc/R/library/BH/include' -I"C:/rtools42/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c RcppExports.cpp -o RcppExports.o g++ -std=gnu++14 -I"F:/biocbuild/bbs-3.16-bioc/R/library/zlibbioc/include" -I"F:/biocbuild/bbs-3.16-bioc/R/include" -DNDEBUG -I'F:/biocbuild/bbs-3.16-bioc/R/library/Rcpp/include' -I'F:/biocbuild/bbs-3.16-bioc/R/library/BH/include' -I"C:/rtools42/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c lib_10X_barcode.cpp -o lib_10X_barcode.o In file included from F:/biocbuild/bbs-3.16-bioc/R/library/BH/include/boost/mpl/aux_/na_assert.hpp:23, from F:/biocbuild/bbs-3.16-bioc/R/library/BH/include/boost/mpl/arg.hpp:25, from F:/biocbuild/bbs-3.16-bioc/R/library/BH/include/boost/mpl/placeholders.hpp:24, from F:/biocbuild/bbs-3.16-bioc/R/library/BH/include/boost/iterator/iterator_categories.hpp:16, from F:/biocbuild/bbs-3.16-bioc/R/library/BH/include/boost/iterator/iterator_facade.hpp:13, from F:/biocbuild/bbs-3.16-bioc/R/library/BH/include/boost/range/iterator_range_core.hpp:27, from F:/biocbuild/bbs-3.16-bioc/R/library/BH/include/boost/range/iterator_range.hpp:13, from F:/biocbuild/bbs-3.16-bioc/R/library/BH/include/boost/range/as_literal.hpp:18, from F:/biocbuild/bbs-3.16-bioc/R/library/BH/include/boost/algorithm/string/trim.hpp:19, from F:/biocbuild/bbs-3.16-bioc/R/library/BH/include/boost/algorithm/string.hpp:19, from lib_10X_barcode.cpp:8: F:/biocbuild/bbs-3.16-bioc/R/library/BH/include/boost/mpl/assert.hpp:194:21: warning: unnecessary parentheses in declaration of 'assert_arg' [-Wparentheses] 194 | failed ************ (Pred::************ | ^ F:/biocbuild/bbs-3.16-bioc/R/library/BH/include/boost/mpl/assert.hpp:199:21: warning: unnecessary parentheses in declaration of 'assert_not_arg' [-Wparentheses] 199 | failed ************ (boost::mpl::not_<Pred>::************ | ^ In file included from F:/biocbuild/bbs-3.16-bioc/R/library/BH/include/boost/bind/mem_fn.hpp:25, from F:/biocbuild/bbs-3.16-bioc/R/library/BH/include/boost/mem_fn.hpp:22, from F:/biocbuild/bbs-3.16-bioc/R/library/BH/include/boost/function/detail/prologue.hpp:18, from F:/biocbuild/bbs-3.16-bioc/R/library/BH/include/boost/function.hpp:30, from F:/biocbuild/bbs-3.16-bioc/R/library/BH/include/boost/algorithm/string/detail/find_iterator.hpp:18, from F:/biocbuild/bbs-3.16-bioc/R/library/BH/include/boost/algorithm/string/find_iterator.hpp:24, from F:/biocbuild/bbs-3.16-bioc/R/library/BH/include/boost/algorithm/string/iter_find.hpp:27, from F:/biocbuild/bbs-3.16-bioc/R/library/BH/include/boost/algorithm/string/split.hpp:16, from F:/biocbuild/bbs-3.16-bioc/R/library/BH/include/boost/algorithm/string.hpp:23, from lib_10X_barcode.cpp:8: F:/biocbuild/bbs-3.16-bioc/R/library/BH/include/boost/get_pointer.hpp:48:40: warning: 'template<class> class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 48 | template<class T> T * get_pointer(std::auto_ptr<T> const& p) | ^~~~~~~~ In file included from c:\rtools42\x86_64-w64-mingw32.static.posix\lib\gcc\x86_64-w64-mingw32.static.posix\10.4.0\include\c++\bits\locale_conv.h:41, from c:\rtools42\x86_64-w64-mingw32.static.posix\lib\gcc\x86_64-w64-mingw32.static.posix\10.4.0\include\c++\locale:43, from F:/biocbuild/bbs-3.16-bioc/R/library/BH/include/boost/algorithm/string/classification.hpp:15, from F:/biocbuild/bbs-3.16-bioc/R/library/BH/include/boost/algorithm/string/trim.hpp:23, from F:/biocbuild/bbs-3.16-bioc/R/library/BH/include/boost/algorithm/string.hpp:19, from lib_10X_barcode.cpp:8: c:\rtools42\x86_64-w64-mingw32.static.posix\lib\gcc\x86_64-w64-mingw32.static.posix\10.4.0\include\c++\bits\unique_ptr.h:57:28: note: declared here 57 | template<typename> class auto_ptr; | ^~~~~~~~ lib_10X_barcode.cpp: In function 'Rcpp::DataFrame parse_10x_scSeq(std::string, std::string, std::string, std::string)': lib_10X_barcode.cpp:76:29: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::__cxx11::basic_string<char> >::size_type' {aka 'long long unsigned int'} [-Wsign-compare] 76 | for (int j=11; j<parts.size(); j++) { | ~^~~~~~~~~~~~~ g++ -std=gnu++14 -I"F:/biocbuild/bbs-3.16-bioc/R/library/zlibbioc/include" -I"F:/biocbuild/bbs-3.16-bioc/R/include" -DNDEBUG -I'F:/biocbuild/bbs-3.16-bioc/R/library/Rcpp/include' -I'F:/biocbuild/bbs-3.16-bioc/R/library/BH/include' -I"C:/rtools42/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c lib_clustering.cpp -o lib_clustering.o lib_clustering.cpp: In function 'int hamm_dist(std::string, std::string)': lib_clustering.cpp:59:21: warning: comparison of integer expressions of different signedness: 'int' and 'std::__cxx11::basic_string<char>::size_type' {aka 'long long unsigned int'} [-Wsign-compare] 59 | for (int i=0; i < s1.length(); i++) { | ~~^~~~~~~~~~~~~ lib_clustering.cpp: In function 'Rcpp::List seq_correct(std::vector<std::__cxx11::basic_string<char> >, Rcpp::IntegerVector, int, int, double, int, int, int, int)': lib_clustering.cpp:127:21: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::__cxx11::basic_string<char> >::size_type' {aka 'long long unsigned int'} [-Wsign-compare] 127 | for (auto i=0; i<seq.size(); i++) { | ~^~~~~~~~~~~ lib_clustering.cpp:232:21: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::pair<std::__cxx11::basic_string<char>, int> >::size_type' {aka 'long long unsigned int'} [-Wsign-compare] 232 | for (auto i=0; i<res.size(); i++) { | ~^~~~~~~~~~~ g++ -std=gnu++14 -I"F:/biocbuild/bbs-3.16-bioc/R/library/zlibbioc/include" -I"F:/biocbuild/bbs-3.16-bioc/R/include" -DNDEBUG -I'F:/biocbuild/bbs-3.16-bioc/R/library/Rcpp/include' -I'F:/biocbuild/bbs-3.16-bioc/R/library/BH/include' -I"C:/rtools42/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c lib_read_seq.cpp -o lib_read_seq.o g++ -std=gnu++14 -shared -s -static-libgcc -o CellBarcode.dll tmp.def RcppExports.o lib_10X_barcode.o lib_clustering.o lib_read_seq.o -LF:/biocbuild/bbs-3.16-bioc/R/library/zlibbioc/libs/x64 -lzlib1bioc -LC:/rtools42/x86_64-w64-mingw32.static.posix/lib/x64 -LC:/rtools42/x86_64-w64-mingw32.static.posix/lib -LF:/biocbuild/bbs-3.16-bioc/R/bin/x64 -lR installing to F:/biocbuild/bbs-3.16-bioc/meat/CellBarcode.buildbin-libdir/00LOCK-CellBarcode/00new/CellBarcode/libs/x64 ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * MD5 sums packaged installation of 'CellBarcode' as CellBarcode_1.4.0.zip * DONE (CellBarcode)