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### Running command:
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### /home/biocbuild/bbs-3.15-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data scanMiR
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* checking for file ‘scanMiR/DESCRIPTION’ ... OK
* preparing ‘scanMiR’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘Kdmodels.Rmd’ using rmarkdown
--- finished re-building ‘Kdmodels.Rmd’
--- re-building ‘scanning.Rmd’ using rmarkdown
Loading required package: BiocGenerics
Attaching package: 'BiocGenerics'
The following objects are masked from 'package:stats':
IQR, mad, sd, var, xtabs
The following objects are masked from 'package:base':
Filter, Find, Map, Position, Reduce, anyDuplicated, append,
as.data.frame, basename, cbind, colnames, dirname, do.call,
duplicated, eval, evalq, get, grep, grepl, intersect, is.unsorted,
lapply, mapply, match, mget, order, paste, pmax, pmax.int, pmin,
pmin.int, rank, rbind, rownames, sapply, setdiff, sort, table,
tapply, union, unique, unsplit, which.max, which.min
Loading required package: S4Vectors
Loading required package: stats4
Attaching package: 'S4Vectors'
The following objects are masked from 'package:base':
I, expand.grid, unname
Loading required package: IRanges
Loading required package: XVector
Loading required package: GenomeInfoDb
Attaching package: 'Biostrings'
The following object is masked from 'package:base':
strsplit
Quitting from lines 274-276 (scanning.Rmd)
Error: processing vignette 'scanning.Rmd' failed with diagnostics:
column(s) not found: ORF.non-canonical
--- failed re-building ‘scanning.Rmd’
SUMMARY: processing the following file failed:
‘scanning.Rmd’
Error: Vignette re-building failed.
Execution halted
