JiaHong Fong
| Snapshot Date: 2022-03-17 13:55:23 -0400 (Thu, 17 Mar 2022) |
| git_url: https://git.bioconductor.org/packages/abseqR |
| git_branch: master |
| git_last_commit: bdec000 |
| git_last_commit_date: 2021-10-26 12:48:00 -0400 (Tue, 26 Oct 2021) |
| Back to Multiple platform build/check report for BioC 3.15 |
|
This page was generated on 2022-03-18 11:06:52 -0400 (Fri, 18 Mar 2022).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 20.04.4 LTS) | x86_64 | R Under development (unstable) (2022-02-17 r81757) -- "Unsuffered Consequences" | 4334 |
| riesling1 | Windows Server 2019 Standard | x64 | R Under development (unstable) (2021-11-21 r81221) -- "Unsuffered Consequences" | 4097 |
| palomino3 | Windows Server 2022 Datacenter | x64 | R Under development (unstable) (2022-02-17 r81757 ucrt) -- "Unsuffered Consequences" | 4083 |
| merida1 | macOS 10.14.6 Mojave | x86_64 | R Under development (unstable) (2022-03-02 r81842) -- "Unsuffered Consequences" | 4134 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
|
To the developers/maintainers of the abseqR package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/abseqR.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 9/2090 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| abseqR 1.13.0 (landing page) JiaHong Fong
| nebbiolo1 | Linux (Ubuntu 20.04.4 LTS) / x86_64 | OK | OK | OK | | ||||||||
| riesling1 | Windows Server 2019 Standard / x64 | OK | OK | OK | OK | |||||||||
| palomino3 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | | ||||||||
| merida1 | macOS 10.14.6 Mojave / x86_64 | OK | ERROR | skipped | skipped | |||||||||
| Package: abseqR |
| Version: 1.13.0 |
| Command: D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD INSTALL abseqR |
| StartedAt: 2022-03-17 15:57:16 -0400 (Thu, 17 Mar 2022) |
| EndedAt: 2022-03-17 15:58:55 -0400 (Thu, 17 Mar 2022) |
| EllapsedTime: 99.0 seconds |
| RetCode: 0 |
| Status: OK |
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### Running command:
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### D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD INSTALL abseqR
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* installing to library 'D:/biocbuild/bbs-3.15-bioc/R/library'
* installing *source* package 'abseqR' ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'abseqR'
finding HTML links ... done
AbSeqCRep-class html
AbSeqRep-class html
abseqReport html
dot-UTR5Analysis html
dot-abundanceAnalysis html
dot-abundancePlot html
dot-alignQualityHeatMaps html
dot-allPrimerNames html
dot-aminoAcidBar html
dot-aminoAcidPlot html
dot-analyzeUpstreamValidity html
dot-annotAnalysis html
dot-asRepertoireAlignLen html
dot-asRepertoireBitscore html
dot-asRepertoireChain html
dot-asRepertoireDir html
dot-asRepertoireList html
dot-asRepertoireName html
dot-asRepertoirePrimer3 html
dot-asRepertoirePrimer5 html
dot-asRepertoireQueryStart html
dot-asRepertoireSubjectStart html
dot-asRepertoireUpstream html
dot-boxPlot html
dot-calculateDInd html
dot-calculateDiversityEstimates html
dot-canonicalizeTitle html
dot-capitalize html
dot-checkVert html
dot-cloneDistHist html
dot-cloneDistMarginal html
dot-clonotypeAnalysis html
dot-collateReports html
dot-commonPrimerNames html
dot-correlationTest html
dot-distanceMeasure html
dot-diversityAnalysis html
dot-emptyPlot html
dot-findRepertoires html
dot-generateAllSpectratypes html
dot-generateDelayedReport html
dot-generateReport html
dot-getLineTypes html
dot-getTotal html
dot-hmFromMatrix html
dot-inferAnalyzed html
dot-loadMatrixFromDF html
dot-loadSamplesFromString html
dot-pairwiseComparison html
dot-plotCirclize html
dot-plotDist html
dot-plotDiversityCurves html
dot-plotDuplication html
dot-plotErrorDist html
dot-plotIGVErrors html
dot-plotIGVUpstreamLenDist html
dot-plotIGVUpstreamLenDistDetailed html
dot-plotPrimerIGVStatus html
dot-plotPrimerIntegrity html
dot-plotRarefaction html
dot-plotRecapture html
dot-plotSamples html
dot-plotSpectratype html
dot-plotUpstreamLength html
dot-plotUpstreamLengthDist html
dot-primerAnalysis html
dot-prodDistPlot html
dot-productivityAnalysis html
dot-productivityPlot html
dot-readSummary html
dot-regionAnalysis html
dot-reportLBE html
dot-saveAs html
dot-scatterPlot html
dot-scatterPlotComplex html
dot-secretionSignalAnalysis html
dot-substituteStringInFile html
dot-summarySE html
dot-topNDist html
dot-vennIntersection html
plus-AbSeqCRep-AbSeqCRep-method html
plus-AbSeqCRep-AbSeqRep-method html
plus-AbSeqRep-AbSeqCRep-method html
plus-AbSeqRep-AbSeqRep-method html
report html
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (abseqR)
Making 'packages.html' ...Warning in packageDescription(i, lib.loc = lib, fields = "Title", encoding = "UTF-8") :
DESCRIPTION file of package 'TFutils' is missing or broken
done