Back to Multiple platform build/check report for BioC 3.15 |
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This page was generated on 2022-10-19 13:23:20 -0400 (Wed, 19 Oct 2022).
Hostname | OS | Arch (*) | R version | Installed pkgs |
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nebbiolo1 | Linux (Ubuntu 20.04.5 LTS) | x86_64 | 4.2.1 (2022-06-23) -- "Funny-Looking Kid" | 4386 |
palomino3 | Windows Server 2022 Datacenter | x64 | 4.2.1 (2022-06-23 ucrt) -- "Funny-Looking Kid" | 4138 |
merida1 | macOS 10.14.6 Mojave | x86_64 | 4.2.1 (2022-06-23) -- "Funny-Looking Kid" | 4205 |
Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X |
To the developers/maintainers of the Mulcom package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/Mulcom.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
Package 1269/2140 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
Mulcom 1.46.0 (landing page) Claudio Isella
| nebbiolo1 | Linux (Ubuntu 20.04.5 LTS) / x86_64 | OK | OK | WARNINGS | |||||||||
palomino3 | Windows Server 2022 Datacenter / x64 | OK | OK | WARNINGS | OK | |||||||||
merida1 | macOS 10.14.6 Mojave / x86_64 | OK | OK | WARNINGS | OK | |||||||||
Package: Mulcom |
Version: 1.46.0 |
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:Mulcom.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings Mulcom_1.46.0.tar.gz |
StartedAt: 2022-10-19 05:12:43 -0400 (Wed, 19 Oct 2022) |
EndedAt: 2022-10-19 05:14:53 -0400 (Wed, 19 Oct 2022) |
EllapsedTime: 129.8 seconds |
RetCode: 0 |
Status: WARNINGS |
CheckDir: Mulcom.Rcheck |
Warnings: 1 |
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:Mulcom.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings Mulcom_1.46.0.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/Users/biocbuild/bbs-3.15-bioc/meat/Mulcom.Rcheck’ * using R version 4.2.1 (2022-06-23) * using platform: x86_64-apple-darwin17.0 (64-bit) * using session charset: UTF-8 * using option ‘--no-vignettes’ * checking for file ‘Mulcom/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘Mulcom’ version ‘1.46.0’ * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘Mulcom’ can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of ‘data’ directory ... OK * checking data for non-ASCII characters ... OK * checking data for ASCII and uncompressed saves ... OK * checking line endings in C/C++/Fortran sources/headers ... OK * checking compiled code ... NOTE Note: information on .o files is not available * checking files in ‘vignettes’ ... WARNING Files in the 'vignettes' directory but no files in 'inst/doc': ‘Mulcom.Rmd’ Package has no Sweave vignette sources and no VignetteBuilder field. * checking examples ... OK Examples with CPU (user + system) or elapsed time > 5s user system elapsed mulInt 7.598 1.224 8.833 mulOpt 6.586 0.881 7.475 * checking PDF version of manual ... OK * DONE Status: 1 WARNING, 1 NOTE See ‘/Users/biocbuild/bbs-3.15-bioc/meat/Mulcom.Rcheck/00check.log’ for details.
Mulcom.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL Mulcom ### ############################################################################## ############################################################################## * installing to library ‘/Library/Frameworks/R.framework/Versions/4.2/Resources/library’ * installing *source* package ‘Mulcom’ ... ** using staged installation ** libs clang++ -mmacosx-version-min=10.13 -std=gnu++14 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -Wall -g -O2 -c mulLibs.cc -o mulLibs.o mulLibs.cc:708:17: warning: expression result unused [-Wunused-value] current_cluster ; ^~~~~~~~~~~~~~~ 1 warning generated. clang++ -mmacosx-version-min=10.13 -std=gnu++14 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o Mulcom.so mulLibs.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation installing to /Library/Frameworks/R.framework/Versions/4.2/Resources/library/00LOCK-Mulcom/00new/Mulcom/libs ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (Mulcom)
Mulcom.Rcheck/Mulcom-Ex.timings
name | user | system | elapsed | |
MULCOM-class | 0.540 | 0.019 | 0.564 | |
MULCOM_P | 0.414 | 0.009 | 0.423 | |
mulCAND | 2.029 | 0.042 | 2.075 | |
mulCalc | 0.432 | 0.013 | 0.445 | |
mulDELTA | 0.291 | 0.005 | 0.297 | |
mulDiff | 1.803 | 0.032 | 1.837 | |
mulFSG | 1.806 | 0.036 | 1.844 | |
mulIndex | 0.269 | 0.004 | 0.274 | |
mulInt | 7.598 | 1.224 | 8.833 | |
mulOpt | 6.586 | 0.881 | 7.475 | |
mulOptPars | 1.764 | 0.012 | 1.778 | |
mulOptPlot | 2.524 | 0.151 | 2.679 | |
mulParOpt | 2.538 | 0.132 | 2.689 | |
mulPerm | 1.979 | 0.025 | 2.149 | |
mulPermC | 0.288 | 0.004 | 0.319 | |
mulScores | 0.428 | 0.004 | 0.473 | |