Back to Long Tests report for BioC 3.14

This page was generated on 2022-04-09 21:00:03 -0400 (Sat, 09 Apr 2022).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 20.04.4 LTS)x86_644.1.3 (2022-03-10) -- "One Push-Up" 4322
riesling1Windows Server 2019 Standardx644.1.2 (2021-11-01) -- "Bird Hippie" 4108
machv2macOS 10.14.6 Mojavex86_644.1.3 (2022-03-10) -- "One Push-Up" 4135
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

CHECK results for autonomics on riesling1


To the developers/maintainers of the autonomics package:
Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 2/19HostnameOS / ArchCHECK
autonomics 1.2.0  (landing page)
Aditya Bhagwat
Snapshot Date: 2022-04-09 06:55:01 -0400 (Sat, 09 Apr 2022)
git_url: https://git.bioconductor.org/packages/autonomics
git_branch: RELEASE_3_14
git_last_commit: f775f33
git_last_commit_date: 2021-10-26 13:07:36 -0400 (Tue, 26 Oct 2021)
nebbiolo2Linux (Ubuntu 20.04.4 LTS) / x86_64  ERROR  
riesling1Windows Server 2019 Standard / x64  ERROR  
machv2macOS 10.14.6 Mojave / x86_64  ERROR  

Summary

Package: autonomics
Version: 1.2.0
Command: D:\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD check --force-multiarch --test-dir=longtests --no-stop-on-test-error --no-codoc --no-examples --no-manual --ignore-vignettes --check-subdirs=no autonomics_1.2.0.tar.gz
StartedAt: 2022-04-09 08:04:23 -0400 (Sat, 09 Apr 2022)
EndedAt: 2022-04-09 08:06:52 -0400 (Sat, 09 Apr 2022)
EllapsedTime: 148.7 seconds
RetCode: 1
Status:   ERROR  
CheckDir: autonomics.Rcheck
Warnings: NA

Tests output

autonomics.Rcheck/tests_i386/test_long_1_download.Rout.fail


R version 4.1.2 (2021-11-01) -- "Bird Hippie"
Copyright (C) 2021 The R Foundation for Statistical Computing
Platform: i386-w64-mingw32/i386 (32-bit)

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> context('download_data')
Error in context("download_data") : could not find function "context"
Execution halted

autonomics.Rcheck/tests_x64/test_long_1_download.Rout.fail


R version 4.1.2 (2021-11-01) -- "Bird Hippie"
Copyright (C) 2021 The R Foundation for Statistical Computing
Platform: x86_64-w64-mingw32/x64 (64-bit)

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> context('download_data')
Error in context("download_data") : could not find function "context"
Execution halted

autonomics.Rcheck/tests_i386/test_long_3_read_proteingroups_billing16.Rout.fail


R version 4.1.2 (2021-11-01) -- "Bird Hippie"
Copyright (C) 2021 The R Foundation for Statistical Computing
Platform: i386-w64-mingw32/i386 (32-bit)

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> context('read_proteingroups: billing16')
Error in context("read_proteingroups: billing16") : 
  could not find function "context"
Execution halted

autonomics.Rcheck/tests_x64/test_long_3_read_proteingroups_billing16.Rout.fail


R version 4.1.2 (2021-11-01) -- "Bird Hippie"
Copyright (C) 2021 The R Foundation for Statistical Computing
Platform: x86_64-w64-mingw32/x64 (64-bit)

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> context('read_proteingroups: billing16')
Error in context("read_proteingroups: billing16") : 
  could not find function "context"
Execution halted

autonomics.Rcheck/tests_i386/test_long_3_read_proteingroups_billing19.Rout.fail


R version 4.1.2 (2021-11-01) -- "Bird Hippie"
Copyright (C) 2021 The R Foundation for Statistical Computing
Platform: i386-w64-mingw32/i386 (32-bit)

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> context('read_proteingroups: billing19')
Error in context("read_proteingroups: billing19") : 
  could not find function "context"
Execution halted

autonomics.Rcheck/tests_x64/test_long_3_read_proteingroups_billing19.Rout.fail


R version 4.1.2 (2021-11-01) -- "Bird Hippie"
Copyright (C) 2021 The R Foundation for Statistical Computing
Platform: x86_64-w64-mingw32/x64 (64-bit)

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> context('read_proteingroups: billing19')
Error in context("read_proteingroups: billing19") : 
  could not find function "context"
Execution halted

autonomics.Rcheck/tests_i386/test_long_3_read_rnaseq_bams.Rout.fail


R version 4.1.2 (2021-11-01) -- "Bird Hippie"
Copyright (C) 2021 The R Foundation for Statistical Computing
Platform: i386-w64-mingw32/i386 (32-bit)

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> if (requireNamespace('Rsubread', quietly = TRUE)){
+     context('read_rnaseq_bams')
+     file <- download_data('billing16.bam.zip')
+     test_that('read_rnaseq_bams(file, cpm=FALSE)', {
+         object <- read_rnaseq_bams(
+                     file, paired=TRUE, genome='hg38', cpm=FALSE, plot=FALSE)
+         expect_s4_class(object, 'SummarizedExperiment')
+         expect_identical(SummarizedExperiment::assayNames(object),'log2counts')
+     })
+ 
+     test_that('read_rnaseq_bams(file)', {
+         object <- read_rnaseq_bams(
+                     file, paired=TRUE, genome='hg38', plot=FALSE)
+         expect_s4_class(object, 'SummarizedExperiment')
+         expect_identical(SummarizedExperiment::assayNames(object),'log2cpm')
+     })
+ 
+     test_that('read_rnaseq_bams(file, pca = TRUE)', {
+         object <- read_rnaseq_bams(
+                     file, paired=TRUE, genome='hg38', pca=TRUE, plot=FALSE)
+         expect_s4_class(object, 'SummarizedExperiment')
+         expect_identical(SummarizedExperiment::assayNames(object),'log2cpm')
+         expect_true('pca1' %in% svars(object))
+         expect_true('pca1' %in% fvars(object))
+         expect_true('pca'  %in% names(S4Vectors::metadata(object)))
+     })
+ 
+     test_that("read_rnaseq_counts(file, fit='limma')", {
+         object <- read_rnaseq_bams(
+                     file, paired=TRUE, genome='hg38', fit='limma', plot=FALSE)
+         expect_s4_class(object, 'SummarizedExperiment')
+         expect_true('limma' %in% names(S4Vectors::metadata(object)))
+     })
+ }
Error in context("read_rnaseq_bams") : could not find function "context"
Execution halted

autonomics.Rcheck/tests_x64/test_long_3_read_rnaseq_bams.Rout.fail


R version 4.1.2 (2021-11-01) -- "Bird Hippie"
Copyright (C) 2021 The R Foundation for Statistical Computing
Platform: x86_64-w64-mingw32/x64 (64-bit)

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> if (requireNamespace('Rsubread', quietly = TRUE)){
+     context('read_rnaseq_bams')
+     file <- download_data('billing16.bam.zip')
+     test_that('read_rnaseq_bams(file, cpm=FALSE)', {
+         object <- read_rnaseq_bams(
+                     file, paired=TRUE, genome='hg38', cpm=FALSE, plot=FALSE)
+         expect_s4_class(object, 'SummarizedExperiment')
+         expect_identical(SummarizedExperiment::assayNames(object),'log2counts')
+     })
+ 
+     test_that('read_rnaseq_bams(file)', {
+         object <- read_rnaseq_bams(
+                     file, paired=TRUE, genome='hg38', plot=FALSE)
+         expect_s4_class(object, 'SummarizedExperiment')
+         expect_identical(SummarizedExperiment::assayNames(object),'log2cpm')
+     })
+ 
+     test_that('read_rnaseq_bams(file, pca = TRUE)', {
+         object <- read_rnaseq_bams(
+                     file, paired=TRUE, genome='hg38', pca=TRUE, plot=FALSE)
+         expect_s4_class(object, 'SummarizedExperiment')
+         expect_identical(SummarizedExperiment::assayNames(object),'log2cpm')
+         expect_true('pca1' %in% svars(object))
+         expect_true('pca1' %in% fvars(object))
+         expect_true('pca'  %in% names(S4Vectors::metadata(object)))
+     })
+ 
+     test_that("read_rnaseq_counts(file, fit='limma')", {
+         object <- read_rnaseq_bams(
+                     file, paired=TRUE, genome='hg38', fit='limma', plot=FALSE)
+         expect_s4_class(object, 'SummarizedExperiment')
+         expect_true('limma' %in% names(S4Vectors::metadata(object)))
+     })
+ }
Error in context("read_rnaseq_bams") : could not find function "context"
Execution halted

autonomics.Rcheck/tests_i386/test_long_3_read_rnaseq_covid19.Rout.fail


R version 4.1.2 (2021-11-01) -- "Bird Hippie"
Copyright (C) 2021 The R Foundation for Statistical Computing
Platform: i386-w64-mingw32/i386 (32-bit)

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> context('read_rnaseq_counts: GSE161731')
Error in context("read_rnaseq_counts: GSE161731") : 
  could not find function "context"
Execution halted

autonomics.Rcheck/tests_x64/test_long_3_read_rnaseq_covid19.Rout.fail


R version 4.1.2 (2021-11-01) -- "Bird Hippie"
Copyright (C) 2021 The R Foundation for Statistical Computing
Platform: x86_64-w64-mingw32/x64 (64-bit)

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> context('read_rnaseq_counts: GSE161731')
Error in context("read_rnaseq_counts: GSE161731") : 
  could not find function "context"
Execution halted

autonomics.Rcheck/tests_i386/test_long_8_fit.Rout.fail


R version 4.1.2 (2021-11-01) -- "Bird Hippie"
Copyright (C) 2021 The R Foundation for Statistical Computing
Platform: i386-w64-mingw32/i386 (32-bit)

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> sumexp_contains_fit <- function(object, fit = 'limma'){
+     is(object, 'SummarizedExperiment') &
+     is.array(S4Vectors::metadata(object)[[fit]]) &
+     (nrow(S4Vectors::metadata(object)[[fit]])==nrow(object)) 
+ }
> 
> #==============================================================================
> 
> context('fit: GSE161731')
Error in context("fit: GSE161731") : could not find function "context"
Execution halted

autonomics.Rcheck/tests_x64/test_long_8_fit.Rout.fail


R version 4.1.2 (2021-11-01) -- "Bird Hippie"
Copyright (C) 2021 The R Foundation for Statistical Computing
Platform: x86_64-w64-mingw32/x64 (64-bit)

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> sumexp_contains_fit <- function(object, fit = 'limma'){
+     is(object, 'SummarizedExperiment') &
+     is.array(S4Vectors::metadata(object)[[fit]]) &
+     (nrow(S4Vectors::metadata(object)[[fit]])==nrow(object)) 
+ }
> 
> #==============================================================================
> 
> context('fit: GSE161731')
Error in context("fit: GSE161731") : could not find function "context"
Execution halted

'R CMD check' output

##############################################################################
##############################################################################
###
### Running command:
###
###   D:\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD check --force-multiarch --test-dir=longtests --no-stop-on-test-error --no-codoc --no-examples --no-manual --ignore-vignettes --check-subdirs=no autonomics_1.2.0.tar.gz
###
##############################################################################
##############################################################################


* using log directory 'D:/biocbuild/bbs-3.14-bioc-longtests/meat/autonomics.Rcheck'
* using R version 4.1.2 (2021-11-01)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using options '--no-codoc --no-examples --no-manual --ignore-vignettes --no-stop-on-test-error'
* checking for file 'autonomics/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'autonomics' version '1.2.0'
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... NOTE
Found the following hidden files and directories:
  .BBSoptions
These were most likely included in error. See section 'Package
structure' in the 'Writing R Extensions' manual.
* checking for portable file names ... OK
* checking whether package 'autonomics' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... SKIPPED
* checking Rd \usage sections ... WARNING
Undocumented arguments in documentation object 'normimpute'
  'ref' 'pos'

Functions with \usage entries need to have the appropriate \alias
entries, and all their arguments documented.
The \usage entries must correspond to syntactically valid R code.
See chapter 'Writing R documentation files' in the 'Writing R
Extensions' manual.
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in 'vignettes' ... SKIPPED
* checking examples ... SKIPPED
* checking for unstated dependencies in 'longtests' ... OK
* checking tests in 'longtests' ...
** running tests for arch 'i386' ...
  Running 'test_long_1_download.R'
  Running 'test_long_3_read_proteingroups_billing16.R'
  Running 'test_long_3_read_proteingroups_billing19.R'
  Running 'test_long_3_read_rnaseq_bams.R'
  Running 'test_long_3_read_rnaseq_covid19.R'
  Running 'test_long_8_fit.R'
 ERROR
Running the tests in 'longtests/test_long_1_download.R' failed.
Complete output:
  > context('download_data')
  Error in context("download_data") : could not find function "context"
  Execution halted
Running the tests in 'longtests/test_long_3_read_proteingroups_billing16.R' failed.
Complete output:
  > context('read_proteingroups: billing16')
  Error in context("read_proteingroups: billing16") : 
    could not find function "context"
  Execution halted
Running the tests in 'longtests/test_long_3_read_proteingroups_billing19.R' failed.
Complete output:
  > context('read_proteingroups: billing19')
  Error in context("read_proteingroups: billing19") : 
    could not find function "context"
  Execution halted
Running the tests in 'longtests/test_long_3_read_rnaseq_bams.R' failed.
Last 13 lines of output:
  +         expect_identical(SummarizedExperiment::assayNames(object),'log2cpm')
  +         expect_true('pca1' %in% svars(object))
  +         expect_true('pca1' %in% fvars(object))
  +         expect_true('pca'  %in% names(S4Vectors::metadata(object)))
  +     })
  + 
  +     test_that("read_rnaseq_counts(file, fit='limma')", {
  +         object <- read_rnaseq_bams(
  +                     file, paired=TRUE, genome='hg38', fit='limma', plot=FALSE)
  +         expect_s4_class(object, 'SummarizedExperiment')
  +         expect_true('limma' %in% names(S4Vectors::metadata(object)))
  +     })
  + }
  Error in context("read_rnaseq_bams") : could not find function "context"
  Execution halted
Running the tests in 'longtests/test_long_3_read_rnaseq_covid19.R' failed.
Complete output:
  > context('read_rnaseq_counts: GSE161731')
  Error in context("read_rnaseq_counts: GSE161731") : 
    could not find function "context"
  Execution halted
Running the tests in 'longtests/test_long_8_fit.R' failed.
Complete output:
  > sumexp_contains_fit <- function(object, fit = 'limma'){
  +     is(object, 'SummarizedExperiment') &
  +     is.array(S4Vectors::metadata(object)[[fit]]) &
  +     (nrow(S4Vectors::metadata(object)[[fit]])==nrow(object)) 
  + }
  > 
  > #==============================================================================
  > 
  > context('fit: GSE161731')
  Error in context("fit: GSE161731") : could not find function "context"
  Execution halted
** running tests for arch 'x64' ...
  Running 'test_long_1_download.R'
  Running 'test_long_3_read_proteingroups_billing16.R'
  Running 'test_long_3_read_proteingroups_billing19.R'
  Running 'test_long_3_read_rnaseq_bams.R'
  Running 'test_long_3_read_rnaseq_covid19.R'
  Running 'test_long_8_fit.R'
 ERROR
Running the tests in 'longtests/test_long_1_download.R' failed.
Complete output:
  > context('download_data')
  Error in context("download_data") : could not find function "context"
  Execution halted
Running the tests in 'longtests/test_long_3_read_proteingroups_billing16.R' failed.
Complete output:
  > context('read_proteingroups: billing16')
  Error in context("read_proteingroups: billing16") : 
    could not find function "context"
  Execution halted
Running the tests in 'longtests/test_long_3_read_proteingroups_billing19.R' failed.
Complete output:
  > context('read_proteingroups: billing19')
  Error in context("read_proteingroups: billing19") : 
    could not find function "context"
  Execution halted
Running the tests in 'longtests/test_long_3_read_rnaseq_bams.R' failed.
Last 13 lines of output:
  +         expect_identical(SummarizedExperiment::assayNames(object),'log2cpm')
  +         expect_true('pca1' %in% svars(object))
  +         expect_true('pca1' %in% fvars(object))
  +         expect_true('pca'  %in% names(S4Vectors::metadata(object)))
  +     })
  + 
  +     test_that("read_rnaseq_counts(file, fit='limma')", {
  +         object <- read_rnaseq_bams(
  +                     file, paired=TRUE, genome='hg38', fit='limma', plot=FALSE)
  +         expect_s4_class(object, 'SummarizedExperiment')
  +         expect_true('limma' %in% names(S4Vectors::metadata(object)))
  +     })
  + }
  Error in context("read_rnaseq_bams") : could not find function "context"
  Execution halted
Running the tests in 'longtests/test_long_3_read_rnaseq_covid19.R' failed.
Complete output:
  > context('read_rnaseq_counts: GSE161731')
  Error in context("read_rnaseq_counts: GSE161731") : 
    could not find function "context"
  Execution halted
Running the tests in 'longtests/test_long_8_fit.R' failed.
Complete output:
  > sumexp_contains_fit <- function(object, fit = 'limma'){
  +     is(object, 'SummarizedExperiment') &
  +     is.array(S4Vectors::metadata(object)[[fit]]) &
  +     (nrow(S4Vectors::metadata(object)[[fit]])==nrow(object)) 
  + }
  > 
  > #==============================================================================
  > 
  > context('fit: GSE161731')
  Error in context("fit: GSE161731") : could not find function "context"
  Execution halted
* DONE

Status: 2 ERRORs, 1 WARNING, 1 NOTE
See
  'D:/biocbuild/bbs-3.14-bioc-longtests/meat/autonomics.Rcheck/00check.log'
for details.

Installation output

autonomics.Rcheck/00install.out

* installing *source* package 'autonomics' ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
Note: wrong number of arguments to '/' 
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
*** arch - i386
*** arch - x64
** testing if installed package can be loaded from final location
*** arch - i386
*** arch - x64
** testing if installed package keeps a record of temporary installation path
* DONE (autonomics)