Back to Multiple platform build/check report for BioC 3.14 |
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This page was generated on 2022-04-13 12:07:30 -0400 (Wed, 13 Apr 2022).
Hostname | OS | Arch (*) | R version | Installed pkgs |
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nebbiolo2 | Linux (Ubuntu 20.04.4 LTS) | x86_64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4324 |
tokay2 | Windows Server 2012 R2 Standard | x64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4077 |
machv2 | macOS 10.14.6 Mojave | x86_64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4137 |
Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X |
To the developers/maintainers of the trackViewer package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/trackViewer.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
Package 1979/2083 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
trackViewer 1.30.0 (landing page) Jianhong Ou
| nebbiolo2 | Linux (Ubuntu 20.04.4 LTS) / x86_64 | OK | OK | OK | |||||||||
tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | |||||||||
machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | |||||||||
Package: trackViewer |
Version: 1.30.0 |
Command: C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/trackViewer_1.30.0.tar.gz && rm -rf trackViewer.buildbin-libdir && mkdir trackViewer.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=trackViewer.buildbin-libdir trackViewer_1.30.0.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL trackViewer_1.30.0.zip && rm trackViewer_1.30.0.tar.gz trackViewer_1.30.0.zip |
StartedAt: 2022-04-12 07:16:41 -0400 (Tue, 12 Apr 2022) |
EndedAt: 2022-04-12 07:19:15 -0400 (Tue, 12 Apr 2022) |
EllapsedTime: 153.5 seconds |
RetCode: 0 |
Status: OK |
############################################################################## ############################################################################## ### ### Running command: ### ### C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/trackViewer_1.30.0.tar.gz && rm -rf trackViewer.buildbin-libdir && mkdir trackViewer.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=trackViewer.buildbin-libdir trackViewer_1.30.0.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL trackViewer_1.30.0.zip && rm trackViewer_1.30.0.tar.gz trackViewer_1.30.0.zip ### ############################################################################## ############################################################################## % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 14 1786k 14 255k 0 0 677k 0 0:00:02 --:--:-- 0:00:02 677k 97 1786k 97 1746k 0 0 1266k 0 0:00:01 0:00:01 --:--:-- 1266k 100 1786k 100 1786k 0 0 1293k 0 0:00:01 0:00:01 --:--:-- 1293k install for i386 * installing *source* package 'trackViewer' ... ** using staged installation ** libs "C:/rtools40/mingw32/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/Rcpp/include' -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c RcppExports.cpp -o RcppExports.o "C:/rtools40/mingw32/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/Rcpp/include' -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c hic.cpp -o hic.o hic.cpp: In member function 'void HicFileHead::readHeader(std::ifstream&)': hic.cpp:247:16: warning: unused variable 'nviPosition' [-Wunused-variable] long nviPosition = readLong(ifile); ^~~~~~~~~~~ hic.cpp:248:16: warning: unused variable 'nviLength' [-Wunused-variable] long nviLength = readLong(ifile); ^~~~~~~~~ hic.cpp: In function 'std::vector<cellData> getByCoor(std::__cxx11::string, int, int, std::__cxx11::string, int, int, int, std::__cxx11::string, std::__cxx11::string, HicFileHead&, HicFileFoot&, std::ifstream&)': hic.cpp:751:19: warning: '*((void*)& bd +8)' may be used uninitialized in this function [-Wmaybe-uninitialized] for(int i=0; i<data.nResolutions; i++){ ~^~~~~~~~~~~~~~~~~~ hic.cpp:797:10: note: '*((void*)& bd +8)' was declared here body bd; ^~ hic.cpp:797:10: warning: '*((void*)& bd +12)' may be used uninitialized in this function [-Wmaybe-uninitialized] C:/rtools40/mingw32/bin/g++ -std=gnu++11 -shared -s -static-libgcc -o trackViewer.dll tmp.def RcppExports.o hic.o -lz -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.14-/R/bin/i386 -lR installing to C:/Users/biocbuild/bbs-3.14-bioc/meat/trackViewer.buildbin-libdir/00LOCK-trackViewer/00new/trackViewer/libs/i386 ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'trackViewer' finding HTML links ... done GRoperator html addArrowMark html addGuideLine html browseTracks-shiny html browseTracks html coverageGR html dandelion.plot html geneModelFromTxdb html geneTrack html getCurTrackViewport html getGeneIDsFromTxDb html getLocation html gi2track html gieStain html gridPlot html ideogramPlot html importBam html importData html importGInteractions html importScSeqScore html importScore html listChromosomes html listResolutions html loadIdeogram html lolliplot html optimizeStyle html parse2GRanges html parseWIG html plotGInteractions html plotGRanges html plotIdeo html plotOneIdeo html pos-class html trackList-class html trackStyle-class html trackViewer-package html trackViewerStyle-class html viewGene html viewTracks html xscale-class html yaxisStyle-class html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path install for x64 * installing *source* package 'trackViewer' ... ** libs "C:/rtools40/mingw64/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/Rcpp/include' -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c RcppExports.cpp -o RcppExports.o "C:/rtools40/mingw64/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/Rcpp/include' -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c hic.cpp -o hic.o hic.cpp: In member function 'void HicFileHead::readHeader(std::ifstream&)': hic.cpp:247:16: warning: unused variable 'nviPosition' [-Wunused-variable] long nviPosition = readLong(ifile); ^~~~~~~~~~~ hic.cpp:248:16: warning: unused variable 'nviLength' [-Wunused-variable] long nviLength = readLong(ifile); ^~~~~~~~~ hic.cpp: In function 'std::vector<cellData> getByCoor(std::__cxx11::string, int, int, std::__cxx11::string, int, int, int, std::__cxx11::string, std::__cxx11::string, HicFileHead&, HicFileFoot&, std::ifstream&)': hic.cpp:751:19: warning: '*((void*)& bd +8)' may be used uninitialized in this function [-Wmaybe-uninitialized] for(int i=0; i<data.nResolutions; i++){ ~^~~~~~~~~~~~~~~~~~ hic.cpp:797:10: note: '*((void*)& bd +8)' was declared here body bd; ^~ hic.cpp:797:10: warning: '*((void*)& bd +16)' may be used uninitialized in this function [-Wmaybe-uninitialized] C:/rtools40/mingw64/bin/g++ -std=gnu++11 -shared -s -static-libgcc -o trackViewer.dll tmp.def RcppExports.o hic.o -lz -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.14-/R/bin/x64 -lR installing to C:/Users/biocbuild/bbs-3.14-bioc/meat/trackViewer.buildbin-libdir/trackViewer/libs/x64 ** testing if installed package can be loaded * MD5 sums packaged installation of 'trackViewer' as trackViewer_1.30.0.zip * DONE (trackViewer) * installing to library 'C:/Users/biocbuild/bbs-3.14-bioc/R/library' package 'trackViewer' successfully unpacked and MD5 sums checked