Back to Multiple platform build/check report for BioC 3.14 |
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This page was generated on 2022-04-13 12:07:20 -0400 (Wed, 13 Apr 2022).
Hostname | OS | Arch (*) | R version | Installed pkgs |
---|---|---|---|---|
nebbiolo2 | Linux (Ubuntu 20.04.4 LTS) | x86_64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4324 |
tokay2 | Windows Server 2012 R2 Standard | x64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4077 |
machv2 | macOS 10.14.6 Mojave | x86_64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4137 |
Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X |
To the developers/maintainers of the scuttle package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/scuttle.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
Package 1751/2083 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
scuttle 1.4.0 (landing page) Aaron Lun
| nebbiolo2 | Linux (Ubuntu 20.04.4 LTS) / x86_64 | OK | OK | WARNINGS | |||||||||
tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | WARNINGS | OK | |||||||||
machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | WARNINGS | OK | |||||||||
Package: scuttle |
Version: 1.4.0 |
Command: C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:scuttle.install-out.txt --library=C:\Users\biocbuild\bbs-3.14-bioc\R\library --no-vignettes --timings scuttle_1.4.0.tar.gz |
StartedAt: 2022-04-13 02:39:11 -0400 (Wed, 13 Apr 2022) |
EndedAt: 2022-04-13 02:57:14 -0400 (Wed, 13 Apr 2022) |
EllapsedTime: 1083.2 seconds |
RetCode: 0 |
Status: WARNINGS |
CheckDir: scuttle.Rcheck |
Warnings: 2 |
############################################################################## ############################################################################## ### ### Running command: ### ### C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:scuttle.install-out.txt --library=C:\Users\biocbuild\bbs-3.14-bioc\R\library --no-vignettes --timings scuttle_1.4.0.tar.gz ### ############################################################################## ############################################################################## * using log directory 'C:/Users/biocbuild/bbs-3.14-bioc/meat/scuttle.Rcheck' * using R version 4.1.3 (2022-03-10) * using platform: x86_64-w64-mingw32 (64-bit) * using session charset: ISO8859-1 * using option '--no-vignettes' * checking for file 'scuttle/DESCRIPTION' ... OK * checking extension type ... Package * this is package 'scuttle' version '1.4.0' * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking whether package 'scuttle' can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking 'build' directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * loading checks for arch 'i386' ** checking whether the package can be loaded ... OK ** checking whether the package can be loaded with stated dependencies ... OK ** checking whether the package can be unloaded cleanly ... OK ** checking whether the namespace can be loaded with stated dependencies ... OK ** checking whether the namespace can be unloaded cleanly ... OK * loading checks for arch 'x64' ** checking whether the package can be loaded ... OK ** checking whether the package can be loaded with stated dependencies ... OK ** checking whether the package can be unloaded cleanly ... OK ** checking whether the namespace can be loaded with stated dependencies ... OK ** checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking line endings in C/C++/Fortran sources/headers ... OK * checking line endings in Makefiles ... OK * checking compilation flags in Makevars ... OK * checking for GNU extensions in Makefiles ... OK * checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK * checking use of PKG_*FLAGS in Makefiles ... OK * checking compiled code ... NOTE Note: information on .o files for i386 is not available Note: information on .o files for x64 is not available File 'C:/Users/biocbuild/bbs-3.14-bioc/R/library/scuttle/libs/i386/scuttle.dll': Found 'abort', possibly from 'abort' (C), 'runtime' (Fortran) Found 'exit', possibly from 'exit' (C), 'stop' (Fortran) Found 'printf', possibly from 'printf' (C) File 'C:/Users/biocbuild/bbs-3.14-bioc/R/library/scuttle/libs/x64/scuttle.dll': Found 'abort', possibly from 'abort' (C), 'runtime' (Fortran) Found 'exit', possibly from 'exit' (C), 'stop' (Fortran) Found 'printf', possibly from 'printf' (C) Compiled code should not call entry points which might terminate R nor write to stdout/stderr instead of to the console, nor use Fortran I/O nor system RNGs. The detected symbols are linked into the code but might come from libraries and not actually be called. See 'Writing portable packages' in the 'Writing R Extensions' manual. * checking files in 'vignettes' ... OK * checking examples ... ** running examples for arch 'i386' ... WARNING Found the following significant warnings: Warning: 'use.altexps=' is deprecated. Warning: 'use.altexps=' is deprecated. Warning: 'use.altexps=' is deprecated. Warning: 'use.altexps=' is deprecated. Deprecated functions may be defunct as soon as of the next release of R. See ?Deprecated. Examples with CPU (user + system) or elapsed time > 5s user system elapsed downsampleBatches 8.88 0.11 8.98 computePooledFactors 6.85 0.17 7.02 aggregateAcrossCells 5.92 0.07 5.98 downsampleMatrix 5.85 0.02 5.88 ** running examples for arch 'x64' ... WARNING Found the following significant warnings: Warning: 'use.altexps=' is deprecated. Warning: 'use.altexps=' is deprecated. Warning: 'use.altexps=' is deprecated. Warning: 'use.altexps=' is deprecated. Deprecated functions may be defunct as soon as of the next release of R. See ?Deprecated. Examples with CPU (user + system) or elapsed time > 5s user system elapsed computePooledFactors 7.13 0.30 7.50 downsampleBatches 6.82 0.01 6.83 aggregateAcrossCells 6.47 0.01 6.49 * checking for unstated dependencies in 'tests' ... OK * checking tests ... ** running tests for arch 'i386' ... Running 'testthat.R' OK ** running tests for arch 'x64' ... Running 'testthat.R' OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes in 'inst/doc' ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: 2 WARNINGs, 1 NOTE See 'C:/Users/biocbuild/bbs-3.14-bioc/meat/scuttle.Rcheck/00check.log' for details.
scuttle.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/scuttle_1.4.0.tar.gz && rm -rf scuttle.buildbin-libdir && mkdir scuttle.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=scuttle.buildbin-libdir scuttle_1.4.0.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL scuttle_1.4.0.zip && rm scuttle_1.4.0.tar.gz scuttle_1.4.0.zip ### ############################################################################## ############################################################################## % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 100 128k 100 128k 0 0 249k 0 --:--:-- --:--:-- --:--:-- 250k install for i386 * installing *source* package 'scuttle' ... ** using staged installation ** libs "C:/rtools40/mingw32/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I../inst/include/ -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/Rcpp/include' -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/beachmat/include' -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c RcppExports.cpp -o RcppExports.o "C:/rtools40/mingw32/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I../inst/include/ -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/Rcpp/include' -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/beachmat/include' -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c cumulative_prop.cpp -o cumulative_prop.o In file included from C:/Users/biocbuild/bbs-3.14-bioc/R/library/beachmat/include/beachmat3/lin_matrix.h:12, from C:/Users/biocbuild/bbs-3.14-bioc/R/library/beachmat/include/beachmat3/read_lin_block.h:11, from C:/Users/biocbuild/bbs-3.14-bioc/R/library/beachmat/include/beachmat3/beachmat.h:24, from cumulative_prop.cpp:2: C:/Users/biocbuild/bbs-3.14-bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h: In instantiation of 'beachmat::SparseArraySeed_reader<V, TIT>::SparseArraySeed_reader(Rcpp::RObject) [with V = Rcpp::Vector<13>; TIT = const int*; Rcpp::RObject = Rcpp::RObject_Impl<Rcpp::PreserveStorage>]': C:/Users/biocbuild/bbs-3.14-bioc/R/library/beachmat/include/beachmat3/lin_matrix.h:561:56: required from 'beachmat::lin_SparseArraySeed<V, TIT>::lin_SparseArraySeed(Rcpp::RObject) [with V = Rcpp::Vector<13>; TIT = const int*; Rcpp::RObject = Rcpp::RObject_Impl<Rcpp::PreserveStorage>]' C:/Users/biocbuild/bbs-3.14-bioc/R/library/beachmat/include/beachmat3/read_lin_block.h:36:39: required from 'std::unique_ptr<_Codecvt> beachmat::read_lin_sparse_block_raw(Rcpp::RObject) [with M = beachmat::lin_matrix; Rcpp::RObject = Rcpp::RObject_Impl<Rcpp::PreserveStorage>]' C:/Users/biocbuild/bbs-3.14-bioc/R/library/beachmat/include/beachmat3/read_lin_block.h:65:63: required from here C:/Users/biocbuild/bbs-3.14-bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:535:17: warning: comparison of integer expressions of different signedness: 'const size_t' {aka 'const unsigned int'} and 'R_xlen_t' {aka 'int'} [-Wsign-compare] if (nnz != x.size()) { C:/Users/biocbuild/bbs-3.14-bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:551:45: warning: comparison of integer expressions of different signedness: 'int' and 'const size_t' {aka 'const unsigned int'} [-Wsign-compare] if (lastR <= 0 || lastR > NR || lastC <= 0 || lastC > NC) { ~~~~~~^~~~ C:/Users/biocbuild/bbs-3.14-bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:551:73: warning: comparison of integer expressions of different signedness: 'int' and 'const size_t' {aka 'const unsigned int'} [-Wsign-compare] if (lastR <= 0 || lastR > NR || lastC <= 0 || lastC > NC) { ~~~~~~^~~~ C:/Users/biocbuild/bbs-3.14-bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:593:35: warning: comparison of integer expressions of different signedness: 'int' and 'const size_t' {aka 'const unsigned int'} [-Wsign-compare] for (int v = 0; v < nnz; ++v, ++rowIt, ++colIt, ++xIt) { ~~^~~~~ C:/Users/biocbuild/bbs-3.14-bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h: In instantiation of 'beachmat::SparseArraySeed_reader<V, TIT>::SparseArraySeed_reader(Rcpp::RObject) [with V = Rcpp::Vector<14, Rcpp::PreserveStorage>; TIT = const double*; Rcpp::RObject = Rcpp::RObject_Impl<Rcpp::PreserveStorage>]': C:/Users/biocbuild/bbs-3.14-bioc/R/library/beachmat/include/beachmat3/lin_matrix.h:561:56: required from 'beachmat::lin_SparseArraySeed<V, TIT>::lin_SparseArraySeed(Rcpp::RObject) [with V = Rcpp::Vector<14, Rcpp::PreserveStorage>; TIT = const double*; Rcpp::RObject = Rcpp::RObject_Impl<Rcpp::PreserveStorage>]' C:/Users/biocbuild/bbs-3.14-bioc/R/library/beachmat/include/beachmat3/read_lin_block.h:38:39: required from 'std::unique_ptr<_Codecvt> beachmat::read_lin_sparse_block_raw(Rcpp::RObject) [with M = beachmat::lin_matrix; Rcpp::RObject = Rcpp::RObject_Impl<Rcpp::PreserveStorage>]' C:/Users/biocbuild/bbs-3.14-bioc/R/library/beachmat/include/beachmat3/read_lin_block.h:65:63: required from here C:/Users/biocbuild/bbs-3.14-bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:535:17: warning: comparison of integer expressions of different signedness: 'const size_t' {aka 'const unsigned int'} and 'R_xlen_t' {aka 'int'} [-Wsign-compare] if (nnz != x.size()) { C:/Users/biocbuild/bbs-3.14-bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:551:45: warning: comparison of integer expressions of different signedness: 'int' and 'const size_t' {aka 'const unsigned int'} [-Wsign-compare] if (lastR <= 0 || lastR > NR || lastC <= 0 || lastC > NC) { ~~~~~~^~~~ C:/Users/biocbuild/bbs-3.14-bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:551:73: warning: comparison of integer expressions of different signedness: 'int' and 'const size_t' {aka 'const unsigned int'} [-Wsign-compare] if (lastR <= 0 || lastR > NR || lastC <= 0 || lastC > NC) { ~~~~~~^~~~ C:/Users/biocbuild/bbs-3.14-bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:593:35: warning: comparison of integer expressions of different signedness: 'int' and 'const size_t' {aka 'const unsigned int'} [-Wsign-compare] for (int v = 0; v < nnz; ++v, ++rowIt, ++colIt, ++xIt) { ~~^~~~~ C:/Users/biocbuild/bbs-3.14-bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h: In instantiation of 'beachmat::SparseArraySeed_reader<V, TIT>::SparseArraySeed_reader(Rcpp::RObject) [with V = Rcpp::Vector<10, Rcpp::PreserveStorage>; TIT = const int*; Rcpp::RObject = Rcpp::RObject_Impl<Rcpp::PreserveStorage>]': C:/Users/biocbuild/bbs-3.14-bioc/R/library/beachmat/include/beachmat3/lin_matrix.h:561:56: required from 'beachmat::lin_SparseArraySeed<V, TIT>::lin_SparseArraySeed(Rcpp::RObject) [with V = Rcpp::Vector<10, Rcpp::PreserveStorage>; TIT = const int*; Rcpp::RObject = Rcpp::RObject_Impl<Rcpp::PreserveStorage>]' C:/Users/biocbuild/bbs-3.14-bioc/R/library/beachmat/include/beachmat3/read_lin_block.h:40:39: required from 'std::unique_ptr<_Codecvt> beachmat::read_lin_sparse_block_raw(Rcpp::RObject) [with M = beachmat::lin_matrix; Rcpp::RObject = Rcpp::RObject_Impl<Rcpp::PreserveStorage>]' C:/Users/biocbuild/bbs-3.14-bioc/R/library/beachmat/include/beachmat3/read_lin_block.h:65:63: required from here C:/Users/biocbuild/bbs-3.14-bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:535:17: warning: comparison of integer expressions of different signedness: 'const size_t' {aka 'const unsigned int'} and 'R_xlen_t' {aka 'int'} [-Wsign-compare] if (nnz != x.size()) { C:/Users/biocbuild/bbs-3.14-bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:551:45: warning: comparison of integer expressions of different signedness: 'int' and 'const size_t' {aka 'const unsigned int'} [-Wsign-compare] if (lastR <= 0 || lastR > NR || lastC <= 0 || lastC > NC) { ~~~~~~^~~~ C:/Users/biocbuild/bbs-3.14-bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:551:73: warning: comparison of integer expressions of different signedness: 'int' and 'const size_t' {aka 'const unsigned int'} [-Wsign-compare] if (lastR <= 0 || lastR > NR || lastC <= 0 || lastC > NC) { ~~~~~~^~~~ C:/Users/biocbuild/bbs-3.14-bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:593:35: warning: comparison of integer expressions of different signedness: 'int' and 'const size_t' {aka 'const unsigned int'} [-Wsign-compare] for (int v = 0; v < nnz; ++v, ++rowIt, ++colIt, ++xIt) { ~~^~~~~ C:/Users/biocbuild/bbs-3.14-bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h: In instantiation of 'beachmat::sparse_index<OUT, I> beachmat::Csparse_core<TIT, I, P>::get_row(size_t, ALT, I*, size_t, size_t) [with OUT = const int*; ALT = int*; TIT = const double*; I = int; P = unsigned int; size_t = unsigned int]': C:/Users/biocbuild/bbs-3.14-bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:650:73: required from 'beachmat::sparse_index<OUT, int> beachmat::SparseArraySeed_reader<V, TIT>::get_row(size_t, ALT, int*, size_t, size_t) [with OUT = const int*; ALT = int*; V = Rcpp::Vector<14, Rcpp::PreserveStorage>; TIT = const double*; size_t = unsigned int]' C:/Users/biocbuild/bbs-3.14-bioc/R/library/beachmat/include/beachmat3/lin_matrix.h:596:82: required from 'beachmat::sparse_index<const int*, int> beachmat::lin_SparseArraySeed<V, TIT>::get_row(size_t, int*, int*, size_t, size_t) [with V = Rcpp::Vector<14, Rcpp::PreserveStorage>; TIT = const double*; size_t = unsigned int]' C:/Users/biocbuild/bbs-3.14-bioc/R/library/beachmat/include/beachmat3/lin_matrix.h:595:35: required from here C:/Users/biocbuild/bbs-3.14-bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:250:22: warning: comparison of integer expressions of different signedness: 'const int' and 'const unsigned int' [-Wsign-compare] if (idex != *pIt && static_cast<size_t>(i[idex]) == r) { ~~~~~^~~~~~~ C:/Users/biocbuild/bbs-3.14-bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h: In instantiation of 'beachmat::sparse_index<OUT, I> beachmat::Csparse_core<TIT, I, P>::get_row(size_t, ALT, I*, size_t, size_t) [with OUT = const double*; ALT = double*; TIT = const double*; I = int; P = unsigned int; size_t = unsigned int]': C:/Users/biocbuild/bbs-3.14-bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:650:73: required from 'beachmat::sparse_index<OUT, int> beachmat::SparseArraySeed_reader<V, TIT>::get_row(size_t, ALT, int*, size_t, size_t) [with OUT = const double*; ALT = double*; V = Rcpp::Vector<14, Rcpp::PreserveStorage>; TIT = const double*; size_t = unsigned int]' C:/Users/biocbuild/bbs-3.14-bioc/R/library/beachmat/include/beachmat3/lin_matrix.h:602:85: required from 'beachmat::sparse_index<const double*, int> beachmat::lin_SparseArraySeed<V, TIT>::get_row(size_t, double*, int*, size_t, size_t) [with V = Rcpp::Vector<14, Rcpp::PreserveStorage>; TIT = const double*; size_t = unsigned int]' C:/Users/biocbuild/bbs-3.14-bioc/R/library/beachmat/include/beachmat3/lin_matrix.h:601:38: required from here C:/Users/biocbuild/bbs-3.14-bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:250:22: warning: comparison of integer expressions of different signedness: 'const int' and 'const unsigned int' [-Wsign-compare] C:/Users/biocbuild/bbs-3.14-bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h: In instantiation of 'beachmat::sparse_index<OUT, I> beachmat::Csparse_core<TIT, I, P>::get_row(size_t, ALT, I*, size_t, size_t) [with OUT = const int*; ALT = int*; TIT = const int*; I = int; P = unsigned int; size_t = unsigned int]': C:/Users/biocbuild/bbs-3.14-bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:650:73: required from 'beachmat::sparse_index<OUT, int> beachmat::SparseArraySeed_reader<V, TIT>::get_row(size_t, ALT, int*, size_t, size_t) [with OUT = const int*; ALT = int*; V = Rcpp::Vector<10, Rcpp::PreserveStorage>; TIT = const int*; size_t = unsigned int]' C:/Users/biocbuild/bbs-3.14-bioc/R/library/beachmat/include/beachmat3/lin_matrix.h:596:82: required from 'beachmat::sparse_index<const int*, int> beachmat::lin_SparseArraySeed<V, TIT>::get_row(size_t, int*, int*, size_t, size_t) [with V = Rcpp::Vector<10, Rcpp::PreserveStorage>; TIT = const int*; size_t = unsigned int]' C:/Users/biocbuild/bbs-3.14-bioc/R/library/beachmat/include/beachmat3/lin_matrix.h:595:35: required from here C:/Users/biocbuild/bbs-3.14-bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:250:22: warning: comparison of integer expressions of different signedness: 'const int' and 'const unsigned int' [-Wsign-compare] C:/Users/biocbuild/bbs-3.14-bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h: In instantiation of 'beachmat::sparse_index<OUT, I> beachmat::Csparse_core<TIT, I, P>::get_row(size_t, ALT, I*, size_t, size_t) [with OUT = const double*; ALT = double*; TIT = const int*; I = int; P = unsigned int; size_t = unsigned int]': C:/Users/biocbuild/bbs-3.14-bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:650:73: required from 'beachmat::sparse_index<OUT, int> beachmat::SparseArraySeed_reader<V, TIT>::get_row(size_t, ALT, int*, size_t, size_t) [with OUT = const double*; ALT = double*; V = Rcpp::Vector<10, Rcpp::PreserveStorage>; TIT = const int*; size_t = unsigned int]' C:/Users/biocbuild/bbs-3.14-bioc/R/library/beachmat/include/beachmat3/lin_matrix.h:602:85: required from 'beachmat::sparse_index<const double*, int> beachmat::lin_SparseArraySeed<V, TIT>::get_row(size_t, double*, int*, size_t, size_t) [with V = Rcpp::Vector<10, Rcpp::PreserveStorage>; TIT = const int*; size_t = unsigned int]' C:/Users/biocbuild/bbs-3.14-bioc/R/library/beachmat/include/beachmat3/lin_matrix.h:601:38: required from here C:/Users/biocbuild/bbs-3.14-bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:250:22: warning: comparison of integer expressions of different signedness: 'const int' and 'const unsigned int' [-Wsign-compare] "C:/rtools40/mingw32/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I../inst/include/ -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/Rcpp/include' -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/beachmat/include' -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c downsample_counts.cpp -o downsample_counts.o In file included from C:/Users/biocbuild/bbs-3.14-bioc/R/library/beachmat/include/beachmat3/lin_matrix.h:12, from C:/Users/biocbuild/bbs-3.14-bioc/R/library/beachmat/include/beachmat3/read_lin_block.h:11, from C:/Users/biocbuild/bbs-3.14-bioc/R/library/beachmat/include/beachmat3/beachmat.h:24, from downsample_counts.cpp:2: C:/Users/biocbuild/bbs-3.14-bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h: In instantiation of 'beachmat::SparseArraySeed_reader<V, TIT>::SparseArraySeed_reader(Rcpp::RObject) [with V = Rcpp::Vector<13>; TIT = const int*; Rcpp::RObject = Rcpp::RObject_Impl<Rcpp::PreserveStorage>]': C:/Users/biocbuild/bbs-3.14-bioc/R/library/beachmat/include/beachmat3/lin_matrix.h:561:56: required from 'beachmat::lin_SparseArraySeed<V, TIT>::lin_SparseArraySeed(Rcpp::RObject) [with V = Rcpp::Vector<13>; TIT = const int*; Rcpp::RObject = Rcpp::RObject_Impl<Rcpp::PreserveStorage>]' C:/Users/biocbuild/bbs-3.14-bioc/R/library/beachmat/include/beachmat3/read_lin_block.h:36:39: required from 'std::unique_ptr<_Codecvt> beachmat::read_lin_sparse_block_raw(Rcpp::RObject) [with M = beachmat::lin_matrix; Rcpp::RObject = Rcpp::RObject_Impl<Rcpp::PreserveStorage>]' C:/Users/biocbuild/bbs-3.14-bioc/R/library/beachmat/include/beachmat3/read_lin_block.h:65:63: required from here C:/Users/biocbuild/bbs-3.14-bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:535:17: warning: comparison of integer expressions of different signedness: 'const size_t' {aka 'const unsigned int'} and 'R_xlen_t' {aka 'int'} [-Wsign-compare] if (nnz != x.size()) { C:/Users/biocbuild/bbs-3.14-bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:551:45: warning: comparison of integer expressions of different signedness: 'int' and 'const size_t' {aka 'const unsigned int'} [-Wsign-compare] if (lastR <= 0 || lastR > NR || lastC <= 0 || lastC > NC) { ~~~~~~^~~~ C:/Users/biocbuild/bbs-3.14-bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:551:73: warning: comparison of integer expressions of different signedness: 'int' and 'const size_t' {aka 'const unsigned int'} [-Wsign-compare] if (lastR <= 0 || lastR > NR || lastC <= 0 || lastC > NC) { ~~~~~~^~~~ C:/Users/biocbuild/bbs-3.14-bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:593:35: warning: comparison of integer expressions of different signedness: 'int' and 'const size_t' {aka 'const unsigned int'} [-Wsign-compare] for (int v = 0; v < nnz; ++v, ++rowIt, ++colIt, ++xIt) { ~~^~~~~ C:/Users/biocbuild/bbs-3.14-bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h: In instantiation of 'beachmat::SparseArraySeed_reader<V, TIT>::SparseArraySeed_reader(Rcpp::RObject) [with V = Rcpp::Vector<14, Rcpp::PreserveStorage>; TIT = const double*; Rcpp::RObject = Rcpp::RObject_Impl<Rcpp::PreserveStorage>]': C:/Users/biocbuild/bbs-3.14-bioc/R/library/beachmat/include/beachmat3/lin_matrix.h:561:56: required from 'beachmat::lin_SparseArraySeed<V, TIT>::lin_SparseArraySeed(Rcpp::RObject) [with V = Rcpp::Vector<14, Rcpp::PreserveStorage>; TIT = const double*; Rcpp::RObject = Rcpp::RObject_Impl<Rcpp::PreserveStorage>]' C:/Users/biocbuild/bbs-3.14-bioc/R/library/beachmat/include/beachmat3/read_lin_block.h:38:39: required from 'std::unique_ptr<_Codecvt> beachmat::read_lin_sparse_block_raw(Rcpp::RObject) [with M = beachmat::lin_matrix; Rcpp::RObject = Rcpp::RObject_Impl<Rcpp::PreserveStorage>]' C:/Users/biocbuild/bbs-3.14-bioc/R/library/beachmat/include/beachmat3/read_lin_block.h:65:63: required from here C:/Users/biocbuild/bbs-3.14-bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:535:17: warning: comparison of integer expressions of different signedness: 'const size_t' {aka 'const unsigned int'} and 'R_xlen_t' {aka 'int'} [-Wsign-compare] if (nnz != x.size()) { C:/Users/biocbuild/bbs-3.14-bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:551:45: warning: comparison of integer expressions of different signedness: 'int' and 'const size_t' {aka 'const unsigned int'} [-Wsign-compare] if (lastR <= 0 || lastR > NR || lastC <= 0 || lastC > NC) { ~~~~~~^~~~ C:/Users/biocbuild/bbs-3.14-bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:551:73: warning: comparison of integer expressions of different signedness: 'int' and 'const size_t' {aka 'const unsigned int'} [-Wsign-compare] if (lastR <= 0 || lastR > NR || lastC <= 0 || lastC > NC) { ~~~~~~^~~~ C:/Users/biocbuild/bbs-3.14-bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:593:35: warning: comparison of integer expressions of different signedness: 'int' and 'const size_t' {aka 'const unsigned int'} [-Wsign-compare] for (int v = 0; v < nnz; ++v, ++rowIt, ++colIt, ++xIt) { ~~^~~~~ C:/Users/biocbuild/bbs-3.14-bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h: In instantiation of 'beachmat::SparseArraySeed_reader<V, TIT>::SparseArraySeed_reader(Rcpp::RObject) [with V = Rcpp::Vector<10, Rcpp::PreserveStorage>; TIT = const int*; Rcpp::RObject = Rcpp::RObject_Impl<Rcpp::PreserveStorage>]': C:/Users/biocbuild/bbs-3.14-bioc/R/library/beachmat/include/beachmat3/lin_matrix.h:561:56: required from 'beachmat::lin_SparseArraySeed<V, TIT>::lin_SparseArraySeed(Rcpp::RObject) [with V = Rcpp::Vector<10, Rcpp::PreserveStorage>; TIT = const int*; Rcpp::RObject = Rcpp::RObject_Impl<Rcpp::PreserveStorage>]' C:/Users/biocbuild/bbs-3.14-bioc/R/library/beachmat/include/beachmat3/read_lin_block.h:40:39: required from 'std::unique_ptr<_Codecvt> beachmat::read_lin_sparse_block_raw(Rcpp::RObject) [with M = beachmat::lin_matrix; Rcpp::RObject = Rcpp::RObject_Impl<Rcpp::PreserveStorage>]' C:/Users/biocbuild/bbs-3.14-bioc/R/library/beachmat/include/beachmat3/read_lin_block.h:65:63: required from here C:/Users/biocbuild/bbs-3.14-bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:535:17: warning: comparison of integer expressions of different signedness: 'const size_t' {aka 'const unsigned int'} and 'R_xlen_t' {aka 'int'} [-Wsign-compare] if (nnz != x.size()) { C:/Users/biocbuild/bbs-3.14-bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:551:45: warning: comparison of integer expressions of different signedness: 'int' and 'const size_t' {aka 'const unsigned int'} [-Wsign-compare] if (lastR <= 0 || lastR > NR || lastC <= 0 || lastC > NC) { ~~~~~~^~~~ C:/Users/biocbuild/bbs-3.14-bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:551:73: warning: comparison of integer expressions of different signedness: 'int' and 'const size_t' {aka 'const unsigned int'} [-Wsign-compare] if (lastR <= 0 || lastR > NR || lastC <= 0 || lastC > NC) { ~~~~~~^~~~ C:/Users/biocbuild/bbs-3.14-bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:593:35: warning: comparison of integer expressions of different signedness: 'int' and 'const size_t' {aka 'const unsigned int'} [-Wsign-compare] for (int v = 0; v < nnz; ++v, ++rowIt, ++colIt, ++xIt) { ~~^~~~~ C:/Users/biocbuild/bbs-3.14-bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h: In instantiation of 'beachmat::sparse_index<OUT, I> beachmat::Csparse_core<TIT, I, P>::get_row(size_t, ALT, I*, size_t, size_t) [with OUT = const int*; ALT = int*; TIT = const double*; I = int; P = unsigned int; size_t = unsigned int]': C:/Users/biocbuild/bbs-3.14-bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:650:73: required from 'beachmat::sparse_index<OUT, int> beachmat::SparseArraySeed_reader<V, TIT>::get_row(size_t, ALT, int*, size_t, size_t) [with OUT = const int*; ALT = int*; V = Rcpp::Vector<14, Rcpp::PreserveStorage>; TIT = const double*; size_t = unsigned int]' C:/Users/biocbuild/bbs-3.14-bioc/R/library/beachmat/include/beachmat3/lin_matrix.h:596:82: required from 'beachmat::sparse_index<const int*, int> beachmat::lin_SparseArraySeed<V, TIT>::get_row(size_t, int*, int*, size_t, size_t) [with V = Rcpp::Vector<14, Rcpp::PreserveStorage>; TIT = const double*; size_t = unsigned int]' C:/Users/biocbuild/bbs-3.14-bioc/R/library/beachmat/include/beachmat3/lin_matrix.h:595:35: required from here C:/Users/biocbuild/bbs-3.14-bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:250:22: warning: comparison of integer expressions of different signedness: 'const int' and 'const unsigned int' [-Wsign-compare] if (idex != *pIt && static_cast<size_t>(i[idex]) == r) { ~~~~~^~~~~~~ C:/Users/biocbuild/bbs-3.14-bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h: In instantiation of 'beachmat::sparse_index<OUT, I> beachmat::Csparse_core<TIT, I, P>::get_row(size_t, ALT, I*, size_t, size_t) [with OUT = const double*; ALT = double*; TIT = const double*; I = int; P = unsigned int; size_t = unsigned int]': C:/Users/biocbuild/bbs-3.14-bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:650:73: required from 'beachmat::sparse_index<OUT, int> beachmat::SparseArraySeed_reader<V, TIT>::get_row(size_t, ALT, int*, size_t, size_t) [with OUT = const double*; ALT = double*; V = Rcpp::Vector<14, Rcpp::PreserveStorage>; TIT = const double*; size_t = unsigned int]' C:/Users/biocbuild/bbs-3.14-bioc/R/library/beachmat/include/beachmat3/lin_matrix.h:602:85: required from 'beachmat::sparse_index<const double*, int> beachmat::lin_SparseArraySeed<V, TIT>::get_row(size_t, double*, int*, size_t, size_t) [with V = Rcpp::Vector<14, Rcpp::PreserveStorage>; TIT = const double*; size_t = unsigned int]' C:/Users/biocbuild/bbs-3.14-bioc/R/library/beachmat/include/beachmat3/lin_matrix.h:601:38: required from here C:/Users/biocbuild/bbs-3.14-bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:250:22: warning: comparison of integer expressions of different signedness: 'const int' and 'const unsigned int' [-Wsign-compare] C:/Users/biocbuild/bbs-3.14-bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h: In instantiation of 'beachmat::sparse_index<OUT, I> beachmat::Csparse_core<TIT, I, P>::get_row(size_t, ALT, I*, size_t, size_t) [with OUT = const int*; ALT = int*; TIT = const int*; I = int; P = unsigned int; size_t = unsigned int]': C:/Users/biocbuild/bbs-3.14-bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:650:73: required from 'beachmat::sparse_index<OUT, int> beachmat::SparseArraySeed_reader<V, TIT>::get_row(size_t, ALT, int*, size_t, size_t) [with OUT = const int*; ALT = int*; V = Rcpp::Vector<10, Rcpp::PreserveStorage>; TIT = const int*; size_t = unsigned int]' C:/Users/biocbuild/bbs-3.14-bioc/R/library/beachmat/include/beachmat3/lin_matrix.h:596:82: required from 'beachmat::sparse_index<const int*, int> beachmat::lin_SparseArraySeed<V, TIT>::get_row(size_t, int*, int*, size_t, size_t) [with V = Rcpp::Vector<10, Rcpp::PreserveStorage>; TIT = const int*; size_t = unsigned int]' C:/Users/biocbuild/bbs-3.14-bioc/R/library/beachmat/include/beachmat3/lin_matrix.h:595:35: required from here C:/Users/biocbuild/bbs-3.14-bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:250:22: warning: comparison of integer expressions of different signedness: 'const int' and 'const unsigned int' [-Wsign-compare] C:/Users/biocbuild/bbs-3.14-bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h: In instantiation of 'beachmat::sparse_index<OUT, I> beachmat::Csparse_core<TIT, I, P>::get_row(size_t, ALT, I*, size_t, size_t) [with OUT = const double*; ALT = double*; TIT = const int*; I = int; P = unsigned int; size_t = unsigned int]': C:/Users/biocbuild/bbs-3.14-bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:650:73: required from 'beachmat::sparse_index<OUT, int> beachmat::SparseArraySeed_reader<V, TIT>::get_row(size_t, ALT, int*, size_t, size_t) [with OUT = const double*; ALT = double*; V = Rcpp::Vector<10, Rcpp::PreserveStorage>; TIT = const int*; size_t = unsigned int]' C:/Users/biocbuild/bbs-3.14-bioc/R/library/beachmat/include/beachmat3/lin_matrix.h:602:85: required from 'beachmat::sparse_index<const double*, int> beachmat::lin_SparseArraySeed<V, TIT>::get_row(size_t, double*, int*, size_t, size_t) [with V = Rcpp::Vector<10, Rcpp::PreserveStorage>; TIT = const int*; size_t = unsigned int]' C:/Users/biocbuild/bbs-3.14-bioc/R/library/beachmat/include/beachmat3/lin_matrix.h:601:38: required from here C:/Users/biocbuild/bbs-3.14-bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:250:22: warning: comparison of integer expressions of different signedness: 'const int' and 'const unsigned int' [-Wsign-compare] "C:/rtools40/mingw32/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I../inst/include/ -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/Rcpp/include' -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/beachmat/include' -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c fit_linear_model.cpp -o fit_linear_model.o In file included from C:/Users/biocbuild/bbs-3.14-bioc/R/library/beachmat/include/beachmat3/lin_matrix.h:12, from C:/Users/biocbuild/bbs-3.14-bioc/R/library/beachmat/include/beachmat3/read_lin_block.h:11, from C:/Users/biocbuild/bbs-3.14-bioc/R/library/beachmat/include/beachmat3/beachmat.h:24, from fit_linear_model.cpp:2: C:/Users/biocbuild/bbs-3.14-bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h: In instantiation of 'beachmat::SparseArraySeed_reader<V, TIT>::SparseArraySeed_reader(Rcpp::RObject) [with V = Rcpp::Vector<13>; TIT = const int*; Rcpp::RObject = Rcpp::RObject_Impl<Rcpp::PreserveStorage>]': C:/Users/biocbuild/bbs-3.14-bioc/R/library/beachmat/include/beachmat3/lin_matrix.h:561:56: required from 'beachmat::lin_SparseArraySeed<V, TIT>::lin_SparseArraySeed(Rcpp::RObject) [with V = Rcpp::Vector<13>; TIT = const int*; Rcpp::RObject = Rcpp::RObject_Impl<Rcpp::PreserveStorage>]' C:/Users/biocbuild/bbs-3.14-bioc/R/library/beachmat/include/beachmat3/read_lin_block.h:36:39: required from 'std::unique_ptr<_Codecvt> beachmat::read_lin_sparse_block_raw(Rcpp::RObject) [with M = beachmat::lin_matrix; Rcpp::RObject = Rcpp::RObject_Impl<Rcpp::PreserveStorage>]' C:/Users/biocbuild/bbs-3.14-bioc/R/library/beachmat/include/beachmat3/read_lin_block.h:65:63: required from here C:/Users/biocbuild/bbs-3.14-bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:535:17: warning: comparison of integer expressions of different signedness: 'const size_t' {aka 'const unsigned int'} and 'R_xlen_t' {aka 'int'} [-Wsign-compare] if (nnz != x.size()) { C:/Users/biocbuild/bbs-3.14-bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:551:45: warning: comparison of integer expressions of different signedness: 'int' and 'const size_t' {aka 'const unsigned int'} [-Wsign-compare] if (lastR <= 0 || lastR > NR || lastC <= 0 || lastC > NC) { ~~~~~~^~~~ C:/Users/biocbuild/bbs-3.14-bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:551:73: warning: comparison of integer expressions of different signedness: 'int' and 'const size_t' {aka 'const unsigned int'} [-Wsign-compare] if (lastR <= 0 || lastR > NR || lastC <= 0 || lastC > NC) { ~~~~~~^~~~ C:/Users/biocbuild/bbs-3.14-bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:593:35: warning: comparison of integer expressions of different signedness: 'int' and 'const size_t' {aka 'const unsigned int'} [-Wsign-compare] for (int v = 0; v < nnz; ++v, ++rowIt, ++colIt, ++xIt) { ~~^~~~~ C:/Users/biocbuild/bbs-3.14-bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h: In instantiation of 'beachmat::SparseArraySeed_reader<V, TIT>::SparseArraySeed_reader(Rcpp::RObject) [with V = Rcpp::Vector<14, Rcpp::PreserveStorage>; TIT = const double*; Rcpp::RObject = Rcpp::RObject_Impl<Rcpp::PreserveStorage>]': C:/Users/biocbuild/bbs-3.14-bioc/R/library/beachmat/include/beachmat3/lin_matrix.h:561:56: required from 'beachmat::lin_SparseArraySeed<V, TIT>::lin_SparseArraySeed(Rcpp::RObject) [with V = Rcpp::Vector<14, Rcpp::PreserveStorage>; TIT = const double*; Rcpp::RObject = Rcpp::RObject_Impl<Rcpp::PreserveStorage>]' C:/Users/biocbuild/bbs-3.14-bioc/R/library/beachmat/include/beachmat3/read_lin_block.h:38:39: required from 'std::unique_ptr<_Codecvt> beachmat::read_lin_sparse_block_raw(Rcpp::RObject) [with M = beachmat::lin_matrix; Rcpp::RObject = Rcpp::RObject_Impl<Rcpp::PreserveStorage>]' C:/Users/biocbuild/bbs-3.14-bioc/R/library/beachmat/include/beachmat3/read_lin_block.h:65:63: required from here C:/Users/biocbuild/bbs-3.14-bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:535:17: warning: comparison of integer expressions of different signedness: 'const size_t' {aka 'const unsigned int'} and 'R_xlen_t' {aka 'int'} [-Wsign-compare] if (nnz != x.size()) { C:/Users/biocbuild/bbs-3.14-bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:551:45: warning: comparison of integer expressions of different signedness: 'int' and 'const size_t' {aka 'const unsigned int'} [-Wsign-compare] if (lastR <= 0 || lastR > NR || lastC <= 0 || lastC > NC) { ~~~~~~^~~~ C:/Users/biocbuild/bbs-3.14-bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:551:73: warning: comparison of integer expressions of different signedness: 'int' and 'const size_t' {aka 'const unsigned int'} [-Wsign-compare] if (lastR <= 0 || lastR > NR || lastC <= 0 || lastC > NC) { ~~~~~~^~~~ C:/Users/biocbuild/bbs-3.14-bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:593:35: warning: comparison of integer expressions of different signedness: 'int' and 'const size_t' {aka 'const unsigned int'} [-Wsign-compare] for (int v = 0; v < nnz; ++v, ++rowIt, ++colIt, ++xIt) { ~~^~~~~ C:/Users/biocbuild/bbs-3.14-bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h: In instantiation of 'beachmat::SparseArraySeed_reader<V, TIT>::SparseArraySeed_reader(Rcpp::RObject) [with V = Rcpp::Vector<10, Rcpp::PreserveStorage>; TIT = const int*; Rcpp::RObject = Rcpp::RObject_Impl<Rcpp::PreserveStorage>]': C:/Users/biocbuild/bbs-3.14-bioc/R/library/beachmat/include/beachmat3/lin_matrix.h:561:56: required from 'beachmat::lin_SparseArraySeed<V, TIT>::lin_SparseArraySeed(Rcpp::RObject) [with V = Rcpp::Vector<10, Rcpp::PreserveStorage>; TIT = const int*; Rcpp::RObject = Rcpp::RObject_Impl<Rcpp::PreserveStorage>]' C:/Users/biocbuild/bbs-3.14-bioc/R/library/beachmat/include/beachmat3/read_lin_block.h:40:39: required from 'std::unique_ptr<_Codecvt> beachmat::read_lin_sparse_block_raw(Rcpp::RObject) [with M = beachmat::lin_matrix; Rcpp::RObject = Rcpp::RObject_Impl<Rcpp::PreserveStorage>]' C:/Users/biocbuild/bbs-3.14-bioc/R/library/beachmat/include/beachmat3/read_lin_block.h:65:63: required from here C:/Users/biocbuild/bbs-3.14-bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:535:17: warning: comparison of integer expressions of different signedness: 'const size_t' {aka 'const unsigned int'} and 'R_xlen_t' {aka 'int'} [-Wsign-compare] if (nnz != x.size()) { C:/Users/biocbuild/bbs-3.14-bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:551:45: warning: comparison of integer expressions of different signedness: 'int' and 'const size_t' {aka 'const unsigned int'} [-Wsign-compare] if (lastR <= 0 || lastR > NR || lastC <= 0 || lastC > NC) { ~~~~~~^~~~ C:/Users/biocbuild/bbs-3.14-bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:551:73: warning: comparison of integer expressions of different signedness: 'int' and 'const size_t' {aka 'const unsigned int'} [-Wsign-compare] if (lastR <= 0 || lastR > NR || lastC <= 0 || lastC > NC) { ~~~~~~^~~~ C:/Users/biocbuild/bbs-3.14-bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:593:35: warning: comparison of integer expressions of different signedness: 'int' and 'const size_t' {aka 'const unsigned int'} [-Wsign-compare] for (int v = 0; v < nnz; ++v, ++rowIt, ++colIt, ++xIt) { ~~^~~~~ C:/Users/biocbuild/bbs-3.14-bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h: In instantiation of 'beachmat::sparse_index<OUT, I> beachmat::Csparse_core<TIT, I, P>::get_row(size_t, ALT, I*, size_t, size_t) [with OUT = const int*; ALT = int*; TIT = const double*; I = int; P = unsigned int; size_t = unsigned int]': C:/Users/biocbuild/bbs-3.14-bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:650:73: required from 'beachmat::sparse_index<OUT, int> beachmat::SparseArraySeed_reader<V, TIT>::get_row(size_t, ALT, int*, size_t, size_t) [with OUT = const int*; ALT = int*; V = Rcpp::Vector<14, Rcpp::PreserveStorage>; TIT = const double*; size_t = unsigned int]' C:/Users/biocbuild/bbs-3.14-bioc/R/library/beachmat/include/beachmat3/lin_matrix.h:596:82: required from 'beachmat::sparse_index<const int*, int> beachmat::lin_SparseArraySeed<V, TIT>::get_row(size_t, int*, int*, size_t, size_t) [with V = Rcpp::Vector<14, Rcpp::PreserveStorage>; TIT = const double*; size_t = unsigned int]' C:/Users/biocbuild/bbs-3.14-bioc/R/library/beachmat/include/beachmat3/lin_matrix.h:595:35: required from here C:/Users/biocbuild/bbs-3.14-bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:250:22: warning: comparison of integer expressions of different signedness: 'const int' and 'const unsigned int' [-Wsign-compare] if (idex != *pIt && static_cast<size_t>(i[idex]) == r) { ~~~~~^~~~~~~ C:/Users/biocbuild/bbs-3.14-bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h: In instantiation of 'beachmat::sparse_index<OUT, I> beachmat::Csparse_core<TIT, I, P>::get_row(size_t, ALT, I*, size_t, size_t) [with OUT = const double*; ALT = double*; TIT = const double*; I = int; P = unsigned int; size_t = unsigned int]': C:/Users/biocbuild/bbs-3.14-bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:650:73: required from 'beachmat::sparse_index<OUT, int> beachmat::SparseArraySeed_reader<V, TIT>::get_row(size_t, ALT, int*, size_t, size_t) [with OUT = const double*; ALT = double*; V = Rcpp::Vector<14, Rcpp::PreserveStorage>; TIT = const double*; size_t = unsigned int]' C:/Users/biocbuild/bbs-3.14-bioc/R/library/beachmat/include/beachmat3/lin_matrix.h:602:85: required from 'beachmat::sparse_index<const double*, int> beachmat::lin_SparseArraySeed<V, TIT>::get_row(size_t, double*, int*, size_t, size_t) [with V = Rcpp::Vector<14, Rcpp::PreserveStorage>; TIT = const double*; size_t = unsigned int]' C:/Users/biocbuild/bbs-3.14-bioc/R/library/beachmat/include/beachmat3/lin_matrix.h:601:38: required from here C:/Users/biocbuild/bbs-3.14-bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:250:22: warning: comparison of integer expressions of different signedness: 'const int' and 'const unsigned int' [-Wsign-compare] C:/Users/biocbuild/bbs-3.14-bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h: In instantiation of 'beachmat::sparse_index<OUT, I> beachmat::Csparse_core<TIT, I, P>::get_row(size_t, ALT, I*, size_t, size_t) [with OUT = const int*; ALT = int*; TIT = const int*; I = int; P = unsigned int; size_t = unsigned int]': C:/Users/biocbuild/bbs-3.14-bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:650:73: required from 'beachmat::sparse_index<OUT, int> beachmat::SparseArraySeed_reader<V, TIT>::get_row(size_t, ALT, int*, size_t, size_t) [with OUT = const int*; ALT = int*; V = Rcpp::Vector<10, Rcpp::PreserveStorage>; TIT = const int*; size_t = unsigned int]' C:/Users/biocbuild/bbs-3.14-bioc/R/library/beachmat/include/beachmat3/lin_matrix.h:596:82: required from 'beachmat::sparse_index<const int*, int> beachmat::lin_SparseArraySeed<V, TIT>::get_row(size_t, int*, int*, size_t, size_t) [with V = Rcpp::Vector<10, Rcpp::PreserveStorage>; TIT = const int*; size_t = unsigned int]' C:/Users/biocbuild/bbs-3.14-bioc/R/library/beachmat/include/beachmat3/lin_matrix.h:595:35: required from here C:/Users/biocbuild/bbs-3.14-bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:250:22: warning: comparison of integer expressions of different signedness: 'const int' and 'const unsigned int' [-Wsign-compare] C:/Users/biocbuild/bbs-3.14-bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h: In instantiation of 'beachmat::sparse_index<OUT, I> beachmat::Csparse_core<TIT, I, P>::get_row(size_t, ALT, I*, size_t, size_t) [with OUT = const double*; ALT = double*; TIT = const int*; I = int; P = unsigned int; size_t = unsigned int]': C:/Users/biocbuild/bbs-3.14-bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:650:73: required from 'beachmat::sparse_index<OUT, int> beachmat::SparseArraySeed_reader<V, TIT>::get_row(size_t, ALT, int*, size_t, size_t) [with OUT = const double*; ALT = double*; V = Rcpp::Vector<10, Rcpp::PreserveStorage>; TIT = const int*; size_t = unsigned int]' C:/Users/biocbuild/bbs-3.14-bioc/R/library/beachmat/include/beachmat3/lin_matrix.h:602:85: required from 'beachmat::sparse_index<const double*, int> beachmat::lin_SparseArraySeed<V, TIT>::get_row(size_t, double*, int*, size_t, size_t) [with V = Rcpp::Vector<10, Rcpp::PreserveStorage>; TIT = const int*; size_t = unsigned int]' C:/Users/biocbuild/bbs-3.14-bioc/R/library/beachmat/include/beachmat3/lin_matrix.h:601:38: required from here C:/Users/biocbuild/bbs-3.14-bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:250:22: warning: comparison of integer expressions of different signedness: 'const int' and 'const unsigned int' [-Wsign-compare] "C:/rtools40/mingw32/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I../inst/include/ -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/Rcpp/include' -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/beachmat/include' -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c pool_size_factors.cpp -o pool_size_factors.o pool_size_factors.cpp: In function 'Rcpp::List pool_size_factors(Rcpp::RObject, Rcpp::NumericVector, Rcpp::IntegerVector, Rcpp::IntegerVector)': pool_size_factors.cpp:56:15: warning: comparison of integer expressions of different signedness: 'const size_t' {aka 'const unsigned int'} and 'R_xlen_t' {aka 'int'} [-Wsign-compare] if (ngenes!=pseudo_cell.size()) { ~~~~~~^~~~~~~~~~~~~~~~~~~~ pool_size_factors.cpp:61:22: warning: comparison of integer expressions of different signedness: 'R_xlen_t' {aka 'int'} and 'unsigned int' [-Wsign-compare] if (order.size() < ncells*2-1) { ~~~~~~~~~~~~~^~~~~~~~~~~~ pool_size_factors.cpp:170:37: warning: comparison of integer expressions of different signedness: 'int' and 'unsigned int' [-Wsign-compare] for (auto i=0; i<n; ++i, ++val, ++rows) { ~^~ In file included from C:/Users/biocbuild/bbs-3.14-bioc/R/library/beachmat/include/beachmat3/lin_matrix.h:12, from C:/Users/biocbuild/bbs-3.14-bioc/R/library/beachmat/include/beachmat3/read_lin_block.h:11, from C:/Users/biocbuild/bbs-3.14-bioc/R/library/beachmat/include/beachmat3/beachmat.h:24, from pool_size_factors.cpp:2: C:/Users/biocbuild/bbs-3.14-bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h: In instantiation of 'beachmat::SparseArraySeed_reader<V, TIT>::SparseArraySeed_reader(Rcpp::RObject) [with V = Rcpp::Vector<13>; TIT = const int*; Rcpp::RObject = Rcpp::RObject_Impl<Rcpp::PreserveStorage>]': C:/Users/biocbuild/bbs-3.14-bioc/R/library/beachmat/include/beachmat3/lin_matrix.h:561:56: required from 'beachmat::lin_SparseArraySeed<V, TIT>::lin_SparseArraySeed(Rcpp::RObject) [with V = Rcpp::Vector<13>; TIT = const int*; Rcpp::RObject = Rcpp::RObject_Impl<Rcpp::PreserveStorage>]' C:/Users/biocbuild/bbs-3.14-bioc/R/library/beachmat/include/beachmat3/read_lin_block.h:36:39: required from 'std::unique_ptr<_Codecvt> beachmat::read_lin_sparse_block_raw(Rcpp::RObject) [with M = beachmat::lin_matrix; Rcpp::RObject = Rcpp::RObject_Impl<Rcpp::PreserveStorage>]' C:/Users/biocbuild/bbs-3.14-bioc/R/library/beachmat/include/beachmat3/read_lin_block.h:65:63: required from here C:/Users/biocbuild/bbs-3.14-bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:535:17: warning: comparison of integer expressions of different signedness: 'const size_t' {aka 'const unsigned int'} and 'R_xlen_t' {aka 'int'} [-Wsign-compare] if (nnz != x.size()) { C:/Users/biocbuild/bbs-3.14-bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:551:45: warning: comparison of integer expressions of different signedness: 'int' and 'const size_t' {aka 'const unsigned int'} [-Wsign-compare] if (lastR <= 0 || lastR > NR || lastC <= 0 || lastC > NC) { ~~~~~~^~~~ C:/Users/biocbuild/bbs-3.14-bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:551:73: warning: comparison of integer expressions of different signedness: 'int' and 'const size_t' {aka 'const unsigned int'} [-Wsign-compare] if (lastR <= 0 || lastR > NR || lastC <= 0 || lastC > NC) { ~~~~~~^~~~ C:/Users/biocbuild/bbs-3.14-bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:593:35: warning: comparison of integer expressions of different signedness: 'int' and 'const size_t' {aka 'const unsigned int'} [-Wsign-compare] for (int v = 0; v < nnz; ++v, ++rowIt, ++colIt, ++xIt) { ~~^~~~~ C:/Users/biocbuild/bbs-3.14-bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h: In instantiation of 'beachmat::SparseArraySeed_reader<V, TIT>::SparseArraySeed_reader(Rcpp::RObject) [with V = Rcpp::Vector<14, Rcpp::PreserveStorage>; TIT = const double*; Rcpp::RObject = Rcpp::RObject_Impl<Rcpp::PreserveStorage>]': C:/Users/biocbuild/bbs-3.14-bioc/R/library/beachmat/include/beachmat3/lin_matrix.h:561:56: required from 'beachmat::lin_SparseArraySeed<V, TIT>::lin_SparseArraySeed(Rcpp::RObject) [with V = Rcpp::Vector<14, Rcpp::PreserveStorage>; TIT = const double*; Rcpp::RObject = Rcpp::RObject_Impl<Rcpp::PreserveStorage>]' C:/Users/biocbuild/bbs-3.14-bioc/R/library/beachmat/include/beachmat3/read_lin_block.h:38:39: required from 'std::unique_ptr<_Codecvt> beachmat::read_lin_sparse_block_raw(Rcpp::RObject) [with M = beachmat::lin_matrix; Rcpp::RObject = Rcpp::RObject_Impl<Rcpp::PreserveStorage>]' C:/Users/biocbuild/bbs-3.14-bioc/R/library/beachmat/include/beachmat3/read_lin_block.h:65:63: required from here C:/Users/biocbuild/bbs-3.14-bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:535:17: warning: comparison of integer expressions of different signedness: 'const size_t' {aka 'const unsigned int'} and 'R_xlen_t' {aka 'int'} [-Wsign-compare] if (nnz != x.size()) { C:/Users/biocbuild/bbs-3.14-bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:551:45: warning: comparison of integer expressions of different signedness: 'int' and 'const size_t' {aka 'const unsigned int'} [-Wsign-compare] if (lastR <= 0 || lastR > NR || lastC <= 0 || lastC > NC) { ~~~~~~^~~~ C:/Users/biocbuild/bbs-3.14-bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:551:73: warning: comparison of integer expressions of different signedness: 'int' and 'const size_t' {aka 'const unsigned int'} [-Wsign-compare] if (lastR <= 0 || lastR > NR || lastC <= 0 || lastC > NC) { ~~~~~~^~~~ C:/Users/biocbuild/bbs-3.14-bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:593:35: warning: comparison of integer expressions of different signedness: 'int' and 'const size_t' {aka 'const unsigned int'} [-Wsign-compare] for (int v = 0; v < nnz; ++v, ++rowIt, ++colIt, ++xIt) { ~~^~~~~ C:/Users/biocbuild/bbs-3.14-bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h: In instantiation of 'beachmat::SparseArraySeed_reader<V, TIT>::SparseArraySeed_reader(Rcpp::RObject) [with V = Rcpp::Vector<10, Rcpp::PreserveStorage>; TIT = const int*; Rcpp::RObject = Rcpp::RObject_Impl<Rcpp::PreserveStorage>]': C:/Users/biocbuild/bbs-3.14-bioc/R/library/beachmat/include/beachmat3/lin_matrix.h:561:56: required from 'beachmat::lin_SparseArraySeed<V, TIT>::lin_SparseArraySeed(Rcpp::RObject) [with V = Rcpp::Vector<10, Rcpp::PreserveStorage>; TIT = const int*; Rcpp::RObject = Rcpp::RObject_Impl<Rcpp::PreserveStorage>]' C:/Users/biocbuild/bbs-3.14-bioc/R/library/beachmat/include/beachmat3/read_lin_block.h:40:39: required from 'std::unique_ptr<_Codecvt> beachmat::read_lin_sparse_block_raw(Rcpp::RObject) [with M = beachmat::lin_matrix; Rcpp::RObject = Rcpp::RObject_Impl<Rcpp::PreserveStorage>]' C:/Users/biocbuild/bbs-3.14-bioc/R/library/beachmat/include/beachmat3/read_lin_block.h:65:63: required from here C:/Users/biocbuild/bbs-3.14-bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:535:17: warning: comparison of integer expressions of different signedness: 'const size_t' {aka 'const unsigned int'} and 'R_xlen_t' {aka 'int'} [-Wsign-compare] if (nnz != x.size()) { C:/Users/biocbuild/bbs-3.14-bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:551:45: warning: comparison of integer expressions of different signedness: 'int' and 'const size_t' {aka 'const unsigned int'} [-Wsign-compare] if (lastR <= 0 || lastR > NR || lastC <= 0 || lastC > NC) { ~~~~~~^~~~ C:/Users/biocbuild/bbs-3.14-bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:551:73: warning: comparison of integer expressions of different signedness: 'int' and 'const size_t' {aka 'const unsigned int'} [-Wsign-compare] if (lastR <= 0 || lastR > NR || lastC <= 0 || lastC > NC) { ~~~~~~^~~~ C:/Users/biocbuild/bbs-3.14-bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:593:35: warning: comparison of integer expressions of different signedness: 'int' and 'const size_t' {aka 'const unsigned int'} [-Wsign-compare] for (int v = 0; v < nnz; ++v, ++rowIt, ++colIt, ++xIt) { ~~^~~~~ C:/Users/biocbuild/bbs-3.14-bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h: In instantiation of 'beachmat::sparse_index<OUT, I> beachmat::Csparse_core<TIT, I, P>::get_row(size_t, ALT, I*, size_t, size_t) [with OUT = const int*; ALT = int*; TIT = const double*; I = int; P = unsigned int; size_t = unsigned int]': C:/Users/biocbuild/bbs-3.14-bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:650:73: required from 'beachmat::sparse_index<OUT, int> beachmat::SparseArraySeed_reader<V, TIT>::get_row(size_t, ALT, int*, size_t, size_t) [with OUT = const int*; ALT = int*; V = Rcpp::Vector<14, Rcpp::PreserveStorage>; TIT = const double*; size_t = unsigned int]' C:/Users/biocbuild/bbs-3.14-bioc/R/library/beachmat/include/beachmat3/lin_matrix.h:596:82: required from 'beachmat::sparse_index<const int*, int> beachmat::lin_SparseArraySeed<V, TIT>::get_row(size_t, int*, int*, size_t, size_t) [with V = Rcpp::Vector<14, Rcpp::PreserveStorage>; TIT = const double*; size_t = unsigned int]' C:/Users/biocbuild/bbs-3.14-bioc/R/library/beachmat/include/beachmat3/lin_matrix.h:595:35: required from here C:/Users/biocbuild/bbs-3.14-bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:250:22: warning: comparison of integer expressions of different signedness: 'const int' and 'const unsigned int' [-Wsign-compare] if (idex != *pIt && static_cast<size_t>(i[idex]) == r) { ~~~~~^~~~~~~ C:/Users/biocbuild/bbs-3.14-bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h: In instantiation of 'beachmat::sparse_index<OUT, I> beachmat::Csparse_core<TIT, I, P>::get_row(size_t, ALT, I*, size_t, size_t) [with OUT = const double*; ALT = double*; TIT = const double*; I = int; P = unsigned int; size_t = unsigned int]': C:/Users/biocbuild/bbs-3.14-bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:650:73: required from 'beachmat::sparse_index<OUT, int> beachmat::SparseArraySeed_reader<V, TIT>::get_row(size_t, ALT, int*, size_t, size_t) [with OUT = const double*; ALT = double*; V = Rcpp::Vector<14, Rcpp::PreserveStorage>; TIT = const double*; size_t = unsigned int]' C:/Users/biocbuild/bbs-3.14-bioc/R/library/beachmat/include/beachmat3/lin_matrix.h:602:85: required from 'beachmat::sparse_index<const double*, int> beachmat::lin_SparseArraySeed<V, TIT>::get_row(size_t, double*, int*, size_t, size_t) [with V = Rcpp::Vector<14, Rcpp::PreserveStorage>; TIT = const double*; size_t = unsigned int]' C:/Users/biocbuild/bbs-3.14-bioc/R/library/beachmat/include/beachmat3/lin_matrix.h:601:38: required from here C:/Users/biocbuild/bbs-3.14-bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:250:22: warning: comparison of integer expressions of different signedness: 'const int' and 'const unsigned int' [-Wsign-compare] C:/Users/biocbuild/bbs-3.14-bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h: In instantiation of 'beachmat::sparse_index<OUT, I> beachmat::Csparse_core<TIT, I, P>::get_row(size_t, ALT, I*, size_t, size_t) [with OUT = const int*; ALT = int*; TIT = const int*; I = int; P = unsigned int; size_t = unsigned int]': C:/Users/biocbuild/bbs-3.14-bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:650:73: required from 'beachmat::sparse_index<OUT, int> beachmat::SparseArraySeed_reader<V, TIT>::get_row(size_t, ALT, int*, size_t, size_t) [with OUT = const int*; ALT = int*; V = Rcpp::Vector<10, Rcpp::PreserveStorage>; TIT = const int*; size_t = unsigned int]' C:/Users/biocbuild/bbs-3.14-bioc/R/library/beachmat/include/beachmat3/lin_matrix.h:596:82: required from 'beachmat::sparse_index<const int*, int> beachmat::lin_SparseArraySeed<V, TIT>::get_row(size_t, int*, int*, size_t, size_t) [with V = Rcpp::Vector<10, Rcpp::PreserveStorage>; TIT = const int*; size_t = unsigned int]' C:/Users/biocbuild/bbs-3.14-bioc/R/library/beachmat/include/beachmat3/lin_matrix.h:595:35: required from here C:/Users/biocbuild/bbs-3.14-bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:250:22: warning: comparison of integer expressions of different signedness: 'const int' and 'const unsigned int' [-Wsign-compare] C:/Users/biocbuild/bbs-3.14-bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h: In instantiation of 'beachmat::sparse_index<OUT, I> beachmat::Csparse_core<TIT, I, P>::get_row(size_t, ALT, I*, size_t, size_t) [with OUT = const double*; ALT = double*; TIT = const int*; I = int; P = unsigned int; size_t = unsigned int]': C:/Users/biocbuild/bbs-3.14-bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:650:73: required from 'beachmat::sparse_index<OUT, int> beachmat::SparseArraySeed_reader<V, TIT>::get_row(size_t, ALT, int*, size_t, size_t) [with OUT = const double*; ALT = double*; V = Rcpp::Vector<10, Rcpp::PreserveStorage>; TIT = const int*; size_t = unsigned int]' C:/Users/biocbuild/bbs-3.14-bioc/R/library/beachmat/include/beachmat3/lin_matrix.h:602:85: required from 'beachmat::sparse_index<const double*, int> beachmat::lin_SparseArraySeed<V, TIT>::get_row(size_t, double*, int*, size_t, size_t) [with V = Rcpp::Vector<10, Rcpp::PreserveStorage>; TIT = const int*; size_t = unsigned int]' C:/Users/biocbuild/bbs-3.14-bioc/R/library/beachmat/include/beachmat3/lin_matrix.h:601:38: required from here C:/Users/biocbuild/bbs-3.14-bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:250:22: warning: comparison of integer expressions of different signedness: 'const int' and 'const unsigned int' [-Wsign-compare] "C:/rtools40/mingw32/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I../inst/include/ -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/Rcpp/include' -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/beachmat/include' -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c sum_counts.cpp -o sum_counts.o In file included from C:/Users/biocbuild/bbs-3.14-bioc/R/library/beachmat/include/beachmat3/lin_matrix.h:12, from C:/Users/biocbuild/bbs-3.14-bioc/R/library/beachmat/include/beachmat3/read_lin_block.h:11, from C:/Users/biocbuild/bbs-3.14-bioc/R/library/beachmat/include/beachmat3/beachmat.h:24, from sum_counts.cpp:2: C:/Users/biocbuild/bbs-3.14-bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h: In instantiation of 'beachmat::SparseArraySeed_reader<V, TIT>::SparseArraySeed_reader(Rcpp::RObject) [with V = Rcpp::Vector<13>; TIT = const int*; Rcpp::RObject = Rcpp::RObject_Impl<Rcpp::PreserveStorage>]': C:/Users/biocbuild/bbs-3.14-bioc/R/library/beachmat/include/beachmat3/lin_matrix.h:561:56: required from 'beachmat::lin_SparseArraySeed<V, TIT>::lin_SparseArraySeed(Rcpp::RObject) [with V = Rcpp::Vector<13>; TIT = const int*; Rcpp::RObject = Rcpp::RObject_Impl<Rcpp::PreserveStorage>]' C:/Users/biocbuild/bbs-3.14-bioc/R/library/beachmat/include/beachmat3/read_lin_block.h:36:39: required from 'std::unique_ptr<_Codecvt> beachmat::read_lin_sparse_block_raw(Rcpp::RObject) [with M = beachmat::lin_matrix; Rcpp::RObject = Rcpp::RObject_Impl<Rcpp::PreserveStorage>]' C:/Users/biocbuild/bbs-3.14-bioc/R/library/beachmat/include/beachmat3/read_lin_block.h:65:63: required from here C:/Users/biocbuild/bbs-3.14-bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:535:17: warning: comparison of integer expressions of different signedness: 'const size_t' {aka 'const unsigned int'} and 'R_xlen_t' {aka 'int'} [-Wsign-compare] if (nnz != x.size()) { C:/Users/biocbuild/bbs-3.14-bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:551:45: warning: comparison of integer expressions of different signedness: 'int' and 'const size_t' {aka 'const unsigned int'} [-Wsign-compare] if (lastR <= 0 || lastR > NR || lastC <= 0 || lastC > NC) { ~~~~~~^~~~ C:/Users/biocbuild/bbs-3.14-bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:551:73: warning: comparison of integer expressions of different signedness: 'int' and 'const size_t' {aka 'const unsigned int'} [-Wsign-compare] if (lastR <= 0 || lastR > NR || lastC <= 0 || lastC > NC) { ~~~~~~^~~~ C:/Users/biocbuild/bbs-3.14-bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:593:35: warning: comparison of integer expressions of different signedness: 'int' and 'const size_t' {aka 'const unsigned int'} [-Wsign-compare] for (int v = 0; v < nnz; ++v, ++rowIt, ++colIt, ++xIt) { ~~^~~~~ C:/Users/biocbuild/bbs-3.14-bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h: In instantiation of 'beachmat::SparseArraySeed_reader<V, TIT>::SparseArraySeed_reader(Rcpp::RObject) [with V = Rcpp::Vector<14, Rcpp::PreserveStorage>; TIT = const double*; Rcpp::RObject = Rcpp::RObject_Impl<Rcpp::PreserveStorage>]': C:/Users/biocbuild/bbs-3.14-bioc/R/library/beachmat/include/beachmat3/lin_matrix.h:561:56: required from 'beachmat::lin_SparseArraySeed<V, TIT>::lin_SparseArraySeed(Rcpp::RObject) [with V = Rcpp::Vector<14, Rcpp::PreserveStorage>; TIT = const double*; Rcpp::RObject = Rcpp::RObject_Impl<Rcpp::PreserveStorage>]' C:/Users/biocbuild/bbs-3.14-bioc/R/library/beachmat/include/beachmat3/read_lin_block.h:38:39: required from 'std::unique_ptr<_Codecvt> beachmat::read_lin_sparse_block_raw(Rcpp::RObject) [with M = beachmat::lin_matrix; Rcpp::RObject = Rcpp::RObject_Impl<Rcpp::PreserveStorage>]' C:/Users/biocbuild/bbs-3.14-bioc/R/library/beachmat/include/beachmat3/read_lin_block.h:65:63: required from here C:/Users/biocbuild/bbs-3.14-bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:535:17: warning: comparison of integer expressions of different signedness: 'const size_t' {aka 'const unsigned int'} and 'R_xlen_t' {aka 'int'} [-Wsign-compare] if (nnz != x.size()) { C:/Users/biocbuild/bbs-3.14-bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:551:45: warning: comparison of integer expressions of different signedness: 'int' and 'const size_t' {aka 'const unsigned int'} [-Wsign-compare] if (lastR <= 0 || lastR > NR || lastC <= 0 || lastC > NC) { ~~~~~~^~~~ C:/Users/biocbuild/bbs-3.14-bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:551:73: warning: comparison of integer expressions of different signedness: 'int' and 'const size_t' {aka 'const unsigned int'} [-Wsign-compare] if (lastR <= 0 || lastR > NR || lastC <= 0 || lastC > NC) { ~~~~~~^~~~ C:/Users/biocbuild/bbs-3.14-bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:593:35: warning: comparison of integer expressions of different signedness: 'int' and 'const size_t' {aka 'const unsigned int'} [-Wsign-compare] for (int v = 0; v < nnz; ++v, ++rowIt, ++colIt, ++xIt) { ~~^~~~~ C:/Users/biocbuild/bbs-3.14-bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h: In instantiation of 'beachmat::SparseArraySeed_reader<V, TIT>::SparseArraySeed_reader(Rcpp::RObject) [with V = Rcpp::Vector<10, Rcpp::PreserveStorage>; TIT = const int*; Rcpp::RObject = Rcpp::RObject_Impl<Rcpp::PreserveStorage>]': C:/Users/biocbuild/bbs-3.14-bioc/R/library/beachmat/include/beachmat3/lin_matrix.h:561:56: required from 'beachmat::lin_SparseArraySeed<V, TIT>::lin_SparseArraySeed(Rcpp::RObject) [with V = Rcpp::Vector<10, Rcpp::PreserveStorage>; TIT = const int*; Rcpp::RObject = Rcpp::RObject_Impl<Rcpp::PreserveStorage>]' C:/Users/biocbuild/bbs-3.14-bioc/R/library/beachmat/include/beachmat3/read_lin_block.h:40:39: required from 'std::unique_ptr<_Codecvt> beachmat::read_lin_sparse_block_raw(Rcpp::RObject) [with M = beachmat::lin_matrix; Rcpp::RObject = Rcpp::RObject_Impl<Rcpp::PreserveStorage>]' C:/Users/biocbuild/bbs-3.14-bioc/R/library/beachmat/include/beachmat3/read_lin_block.h:65:63: required from here C:/Users/biocbuild/bbs-3.14-bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:535:17: warning: comparison of integer expressions of different signedness: 'const size_t' {aka 'const unsigned int'} and 'R_xlen_t' {aka 'int'} [-Wsign-compare] if (nnz != x.size()) { C:/Users/biocbuild/bbs-3.14-bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:551:45: warning: comparison of integer expressions of different signedness: 'int' and 'const size_t' {aka 'const unsigned int'} [-Wsign-compare] if (lastR <= 0 || lastR > NR || lastC <= 0 || lastC > NC) { ~~~~~~^~~~ C:/Users/biocbuild/bbs-3.14-bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:551:73: warning: comparison of integer expressions of different signedness: 'int' and 'const size_t' {aka 'const unsigned int'} [-Wsign-compare] if (lastR <= 0 || lastR > NR || lastC <= 0 || lastC > NC) { ~~~~~~^~~~ C:/Users/biocbuild/bbs-3.14-bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:593:35: warning: comparison of integer expressions of different signedness: 'int' and 'const size_t' {aka 'const unsigned int'} [-Wsign-compare] for (int v = 0; v < nnz; ++v, ++rowIt, ++colIt, ++xIt) { ~~^~~~~ C:/Users/biocbuild/bbs-3.14-bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h: In instantiation of 'beachmat::sparse_index<OUT, I> beachmat::Csparse_core<TIT, I, P>::get_row(size_t, ALT, I*, size_t, size_t) [with OUT = const int*; ALT = int*; TIT = const double*; I = int; P = unsigned int; size_t = unsigned int]': C:/Users/biocbuild/bbs-3.14-bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:650:73: required from 'beachmat::sparse_index<OUT, int> beachmat::SparseArraySeed_reader<V, TIT>::get_row(size_t, ALT, int*, size_t, size_t) [with OUT = const int*; ALT = int*; V = Rcpp::Vector<14, Rcpp::PreserveStorage>; TIT = const double*; size_t = unsigned int]' C:/Users/biocbuild/bbs-3.14-bioc/R/library/beachmat/include/beachmat3/lin_matrix.h:596:82: required from 'beachmat::sparse_index<const int*, int> beachmat::lin_SparseArraySeed<V, TIT>::get_row(size_t, int*, int*, size_t, size_t) [with V = Rcpp::Vector<14, Rcpp::PreserveStorage>; TIT = const double*; size_t = unsigned int]' C:/Users/biocbuild/bbs-3.14-bioc/R/library/beachmat/include/beachmat3/lin_matrix.h:595:35: required from here C:/Users/biocbuild/bbs-3.14-bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:250:22: warning: comparison of integer expressions of different signedness: 'const int' and 'const unsigned int' [-Wsign-compare] if (idex != *pIt && static_cast<size_t>(i[idex]) == r) { ~~~~~^~~~~~~ C:/Users/biocbuild/bbs-3.14-bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h: In instantiation of 'beachmat::sparse_index<OUT, I> beachmat::Csparse_core<TIT, I, P>::get_row(size_t, ALT, I*, size_t, size_t) [with OUT = const double*; ALT = double*; TIT = const double*; I = int; P = unsigned int; size_t = unsigned int]': C:/Users/biocbuild/bbs-3.14-bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:650:73: required from 'beachmat::sparse_index<OUT, int> beachmat::SparseArraySeed_reader<V, TIT>::get_row(size_t, ALT, int*, size_t, size_t) [with OUT = const double*; ALT = double*; V = Rcpp::Vector<14, Rcpp::PreserveStorage>; TIT = const double*; size_t = unsigned int]' C:/Users/biocbuild/bbs-3.14-bioc/R/library/beachmat/include/beachmat3/lin_matrix.h:602:85: required from 'beachmat::sparse_index<const double*, int> beachmat::lin_SparseArraySeed<V, TIT>::get_row(size_t, double*, int*, size_t, size_t) [with V = Rcpp::Vector<14, Rcpp::PreserveStorage>; TIT = const double*; size_t = unsigned int]' C:/Users/biocbuild/bbs-3.14-bioc/R/library/beachmat/include/beachmat3/lin_matrix.h:601:38: required from here C:/Users/biocbuild/bbs-3.14-bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:250:22: warning: comparison of integer expressions of different signedness: 'const int' and 'const unsigned int' [-Wsign-compare] C:/Users/biocbuild/bbs-3.14-bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h: In instantiation of 'beachmat::sparse_index<OUT, I> beachmat::Csparse_core<TIT, I, P>::get_row(size_t, ALT, I*, size_t, size_t) [with OUT = const int*; ALT = int*; TIT = const int*; I = int; P = unsigned int; size_t = unsigned int]': C:/Users/biocbuild/bbs-3.14-bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:650:73: required from 'beachmat::sparse_index<OUT, int> beachmat::SparseArraySeed_reader<V, TIT>::get_row(size_t, ALT, int*, size_t, size_t) [with OUT = const int*; ALT = int*; V = Rcpp::Vector<10, Rcpp::PreserveStorage>; TIT = const int*; size_t = unsigned int]' C:/Users/biocbuild/bbs-3.14-bioc/R/library/beachmat/include/beachmat3/lin_matrix.h:596:82: required from 'beachmat::sparse_index<const int*, int> beachmat::lin_SparseArraySeed<V, TIT>::get_row(size_t, int*, int*, size_t, size_t) [with V = Rcpp::Vector<10, Rcpp::PreserveStorage>; TIT = const int*; size_t = unsigned int]' C:/Users/biocbuild/bbs-3.14-bioc/R/library/beachmat/include/beachmat3/lin_matrix.h:595:35: required from here C:/Users/biocbuild/bbs-3.14-bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:250:22: warning: comparison of integer expressions of different signedness: 'const int' and 'const unsigned int' [-Wsign-compare] C:/Users/biocbuild/bbs-3.14-bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h: In instantiation of 'beachmat::sparse_index<OUT, I> beachmat::Csparse_core<TIT, I, P>::get_row(size_t, ALT, I*, size_t, size_t) [with OUT = const double*; ALT = double*; TIT = const int*; I = int; P = unsigned int; size_t = unsigned int]': C:/Users/biocbuild/bbs-3.14-bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:650:73: required from 'beachmat::sparse_index<OUT, int> beachmat::SparseArraySeed_reader<V, TIT>::get_row(size_t, ALT, int*, size_t, size_t) [with OUT = const double*; ALT = double*; V = Rcpp::Vector<10, Rcpp::PreserveStorage>; TIT = const int*; size_t = unsigned int]' C:/Users/biocbuild/bbs-3.14-bioc/R/library/beachmat/include/beachmat3/lin_matrix.h:602:85: required from 'beachmat::sparse_index<const double*, int> beachmat::lin_SparseArraySeed<V, TIT>::get_row(size_t, double*, int*, size_t, size_t) [with V = Rcpp::Vector<10, Rcpp::PreserveStorage>; TIT = const int*; size_t = unsigned int]' C:/Users/biocbuild/bbs-3.14-bioc/R/library/beachmat/include/beachmat3/lin_matrix.h:601:38: required from here C:/Users/biocbuild/bbs-3.14-bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:250:22: warning: comparison of integer expressions of different signedness: 'const int' and 'const unsigned int' [-Wsign-compare] "C:/rtools40/mingw32/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I../inst/include/ -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/Rcpp/include' -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/beachmat/include' -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c utils.cpp -o utils.o C:/rtools40/mingw32/bin/g++ -shared -s -static-libgcc -o scuttle.dll tmp.def RcppExports.o cumulative_prop.o downsample_counts.o fit_linear_model.o pool_size_factors.o sum_counts.o utils.o -LC:/Users/BIOCBU~1/BBS-3~1.14-/R/bin/i386 -lRlapack -LC:/Users/BIOCBU~1/BBS-3~1.14-/R/bin/i386 -lRblas -lgfortran -lm -lquadmath -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.14-/R/bin/i386 -lR installing to C:/Users/biocbuild/bbs-3.14-bioc/meat/scuttle.buildbin-libdir/00LOCK-scuttle/00new/scuttle/libs/i386 ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'scuttle' finding HTML links ... done addPerCellQCMetrics html finding level-2 HTML links ... done aggregateAcrossCells html aggregateAcrossFeatures html calculateAverage html calculateCPM html calculateFPKM html calculateTPM html cleanSizeFactors html computePooledFactors html computeSpikeFactors html correctGroupSummary html downsampleBatches html downsampleMatrix html fitLinearModel html geometricSizeFactors html isOutlier html librarySizeFactors html logNormCounts html makePerCellDF html makePerFeatureDF html medianSizeFactors html mockSCE html normalizeCounts html numDetectedAcrossCells html numDetectedAcrossFeatures html perCellQCFilters html perCellQCMetrics html perFeatureQCMetrics html quickPerCellQC html readSparseCounts html reexports html scuttle-pkg html scuttle-utils html sumCountsAcrossCells html sumCountsAcrossFeatures html summarizeAssayByGroup html uniquifyFeatureNames html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path install for x64 * installing *source* package 'scuttle' ... ** libs "C:/rtools40/mingw64/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I../inst/include/ -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/Rcpp/include' -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/beachmat/include' -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c RcppExports.cpp -o RcppExports.o "C:/rtools40/mingw64/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I../inst/include/ -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/Rcpp/include' -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/beachmat/include' -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c cumulative_prop.cpp -o cumulative_prop.o In file included from C:/Users/biocbuild/bbs-3.14-bioc/R/library/beachmat/include/beachmat3/lin_matrix.h:12, from C:/Users/biocbuild/bbs-3.14-bioc/R/library/beachmat/include/beachmat3/read_lin_block.h:11, from C:/Users/biocbuild/bbs-3.14-bioc/R/library/beachmat/include/beachmat3/beachmat.h:24, from cumulative_prop.cpp:2: C:/Users/biocbuild/bbs-3.14-bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h: In instantiation of 'beachmat::SparseArraySeed_reader<V, TIT>::SparseArraySeed_reader(Rcpp::RObject) [with V = Rcpp::Vector<13>; TIT = const int*; Rcpp::RObject = Rcpp::RObject_Impl<Rcpp::PreserveStorage>]': C:/Users/biocbuild/bbs-3.14-bioc/R/library/beachmat/include/beachmat3/lin_matrix.h:561:56: required from 'beachmat::lin_SparseArraySeed<V, TIT>::lin_SparseArraySeed(Rcpp::RObject) [with V = Rcpp::Vector<13>; TIT = const int*; Rcpp::RObject = Rcpp::RObject_Impl<Rcpp::PreserveStorage>]' C:/Users/biocbuild/bbs-3.14-bioc/R/library/beachmat/include/beachmat3/read_lin_block.h:36:39: required from 'std::unique_ptr<_Codecvt> beachmat::read_lin_sparse_block_raw(Rcpp::RObject) [with M = beachmat::lin_matrix; Rcpp::RObject = Rcpp::RObject_Impl<Rcpp::PreserveStorage>]' C:/Users/biocbuild/bbs-3.14-bioc/R/library/beachmat/include/beachmat3/read_lin_block.h:65:63: required from here C:/Users/biocbuild/bbs-3.14-bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:535:17: warning: comparison of integer expressions of different signedness: 'const size_t' {aka 'const long long unsigned int'} and 'R_xlen_t' {aka 'long long int'} [-Wsign-compare] if (nnz != x.size()) { C:/Users/biocbuild/bbs-3.14-bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:551:45: warning: comparison of integer expressions of different signedness: 'int' and 'const size_t' {aka 'const long long unsigned int'} [-Wsign-compare] if (lastR <= 0 || lastR > NR || lastC <= 0 || lastC > NC) { ~~~~~~^~~~ C:/Users/biocbuild/bbs-3.14-bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:551:73: warning: comparison of integer expressions of different signedness: 'int' and 'const size_t' {aka 'const long long unsigned int'} [-Wsign-compare] if (lastR <= 0 || lastR > NR || lastC <= 0 || lastC > NC) { ~~~~~~^~~~ C:/Users/biocbuild/bbs-3.14-bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:593:35: warning: comparison of integer expressions of different signedness: 'int' and 'const size_t' {aka 'const long long unsigned int'} [-Wsign-compare] for (int v = 0; v < nnz; ++v, ++rowIt, ++colIt, ++xIt) { ~~^~~~~ C:/Users/biocbuild/bbs-3.14-bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h: In instantiation of 'beachmat::SparseArraySeed_reader<V, TIT>::SparseArraySeed_reader(Rcpp::RObject) [with V = Rcpp::Vector<14, Rcpp::PreserveStorage>; TIT = const double*; Rcpp::RObject = Rcpp::RObject_Impl<Rcpp::PreserveStorage>]': C:/Users/biocbuild/bbs-3.14-bioc/R/library/beachmat/include/beachmat3/lin_matrix.h:561:56: required from 'beachmat::lin_SparseArraySeed<V, TIT>::lin_SparseArraySeed(Rcpp::RObject) [with V = Rcpp::Vector<14, Rcpp::PreserveStorage>; TIT = const double*; Rcpp::RObject = Rcpp::RObject_Impl<Rcpp::PreserveStorage>]' C:/Users/biocbuild/bbs-3.14-bioc/R/library/beachmat/include/beachmat3/read_lin_block.h:38:39: required from 'std::unique_ptr<_Codecvt> beachmat::read_lin_sparse_block_raw(Rcpp::RObject) [with M = beachmat::lin_matrix; Rcpp::RObject = Rcpp::RObject_Impl<Rcpp::PreserveStorage>]' C:/Users/biocbuild/bbs-3.14-bioc/R/library/beachmat/include/beachmat3/read_lin_block.h:65:63: required from here C:/Users/biocbuild/bbs-3.14-bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:535:17: warning: comparison of integer expressions of different signedness: 'const size_t' {aka 'const long long unsigned int'} and 'R_xlen_t' {aka 'long long int'} [-Wsign-compare] if (nnz != x.size()) { C:/Users/biocbuild/bbs-3.14-bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:551:45: warning: comparison of integer expressions of different signedness: 'int' and 'const size_t' {aka 'const long long unsigned int'} [-Wsign-compare] if (lastR <= 0 || lastR > NR || lastC <= 0 || lastC > NC) { ~~~~~~^~~~ C:/Users/biocbuild/bbs-3.14-bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:551:73: warning: comparison of integer expressions of different signedness: 'int' and 'const size_t' {aka 'const long long unsigned int'} [-Wsign-compare] if (lastR <= 0 || lastR > NR || lastC <= 0 || lastC > NC) { ~~~~~~^~~~ C:/Users/biocbuild/bbs-3.14-bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:593:35: warning: comparison of integer expressions of different signedness: 'int' and 'const size_t' {aka 'const long long unsigned int'} [-Wsign-compare] for (int v = 0; v < nnz; ++v, ++rowIt, ++colIt, ++xIt) { ~~^~~~~ C:/Users/biocbuild/bbs-3.14-bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h: In instantiation of 'beachmat::SparseArraySeed_reader<V, TIT>::SparseArraySeed_reader(Rcpp::RObject) [with V = Rcpp::Vector<10, Rcpp::PreserveStorage>; TIT = const int*; Rcpp::RObject = Rcpp::RObject_Impl<Rcpp::PreserveStorage>]': C:/Users/biocbuild/bbs-3.14-bioc/R/library/beachmat/include/beachmat3/lin_matrix.h:561:56: required from 'beachmat::lin_SparseArraySeed<V, TIT>::lin_SparseArraySeed(Rcpp::RObject) [with V = Rcpp::Vector<10, Rcpp::PreserveStorage>; TIT = const int*; Rcpp::RObject = Rcpp::RObject_Impl<Rcpp::PreserveStorage>]' C:/Users/biocbuild/bbs-3.14-bioc/R/library/beachmat/include/beachmat3/read_lin_block.h:40:39: required from 'std::unique_ptr<_Codecvt> beachmat::read_lin_sparse_block_raw(Rcpp::RObject) [with M = beachmat::lin_matrix; Rcpp::RObject = Rcpp::RObject_Impl<Rcpp::PreserveStorage>]' C:/Users/biocbuild/bbs-3.14-bioc/R/library/beachmat/include/beachmat3/read_lin_block.h:65:63: required from here C:/Users/biocbuild/bbs-3.14-bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:535:17: warning: comparison of integer expressions of different signedness: 'const size_t' {aka 'const long long unsigned int'} and 'R_xlen_t' {aka 'long long int'} [-Wsign-compare] if (nnz != x.size()) { C:/Users/biocbuild/bbs-3.14-bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:551:45: warning: comparison of integer expressions of different signedness: 'int' and 'const size_t' {aka 'const long long unsigned int'} [-Wsign-compare] if (lastR <= 0 || lastR > NR || lastC <= 0 || lastC > NC) { ~~~~~~^~~~ C:/Users/biocbuild/bbs-3.14-bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:551:73: warning: comparison of integer expressions of different signedness: 'int' and 'const size_t' {aka 'const long long unsigned int'} [-Wsign-compare] if (lastR <= 0 || lastR > NR || lastC <= 0 || lastC > NC) { ~~~~~~^~~~ C:/Users/biocbuild/bbs-3.14-bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:593:35: warning: comparison of integer expressions of different signedness: 'int' and 'const size_t' {aka 'const long long unsigned int'} [-Wsign-compare] for (int v = 0; v < nnz; ++v, ++rowIt, ++colIt, ++xIt) { ~~^~~~~ C:/Users/biocbuild/bbs-3.14-bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h: In instantiation of 'beachmat::sparse_index<OUT, I> beachmat::Csparse_core<TIT, I, P>::get_row(size_t, ALT, I*, size_t, size_t) [with OUT = const int*; ALT = int*; TIT = const double*; I = int; P = long long unsigned int; size_t = long long unsigned int]': C:/Users/biocbuild/bbs-3.14-bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:650:73: required from 'beachmat::sparse_index<OUT, int> beachmat::SparseArraySeed_reader<V, TIT>::get_row(size_t, ALT, int*, size_t, size_t) [with OUT = const int*; ALT = int*; V = Rcpp::Vector<14, Rcpp::PreserveStorage>; TIT = const double*; size_t = long long unsigned int]' C:/Users/biocbuild/bbs-3.14-bioc/R/library/beachmat/include/beachmat3/lin_matrix.h:596:82: required from 'beachmat::sparse_index<const int*, int> beachmat::lin_SparseArraySeed<V, TIT>::get_row(size_t, int*, int*, size_t, size_t) [with V = Rcpp::Vector<14, Rcpp::PreserveStorage>; TIT = const double*; size_t = long long unsigned int]' C:/Users/biocbuild/bbs-3.14-bioc/R/library/beachmat/include/beachmat3/lin_matrix.h:595:35: required from here C:/Users/biocbuild/bbs-3.14-bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:250:22: warning: comparison of integer expressions of different signedness: 'const int' and 'const long long unsigned int' [-Wsign-compare] if (idex != *pIt && static_cast<size_t>(i[idex]) == r) { ~~~~~^~~~~~~ C:/Users/biocbuild/bbs-3.14-bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h: In instantiation of 'beachmat::sparse_index<OUT, I> beachmat::Csparse_core<TIT, I, P>::get_row(size_t, ALT, I*, size_t, size_t) [with OUT = const double*; ALT = double*; TIT = const double*; I = int; P = long long unsigned int; size_t = long long unsigned int]': C:/Users/biocbuild/bbs-3.14-bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:650:73: required from 'beachmat::sparse_index<OUT, int> beachmat::SparseArraySeed_reader<V, TIT>::get_row(size_t, ALT, int*, size_t, size_t) [with OUT = const double*; ALT = double*; V = Rcpp::Vector<14, Rcpp::PreserveStorage>; TIT = const double*; size_t = long long unsigned int]' C:/Users/biocbuild/bbs-3.14-bioc/R/library/beachmat/include/beachmat3/lin_matrix.h:602:85: required from 'beachmat::sparse_index<const double*, int> beachmat::lin_SparseArraySeed<V, TIT>::get_row(size_t, double*, int*, size_t, size_t) [with V = Rcpp::Vector<14, Rcpp::PreserveStorage>; TIT = const double*; size_t = long long unsigned int]' C:/Users/biocbuild/bbs-3.14-bioc/R/library/beachmat/include/beachmat3/lin_matrix.h:601:38: required from here C:/Users/biocbuild/bbs-3.14-bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:250:22: warning: comparison of integer expressions of different signedness: 'const int' and 'const long long unsigned int' [-Wsign-compare] C:/Users/biocbuild/bbs-3.14-bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h: In instantiation of 'beachmat::sparse_index<OUT, I> beachmat::Csparse_core<TIT, I, P>::get_row(size_t, ALT, I*, size_t, size_t) [with OUT = const int*; ALT = int*; TIT = const int*; I = int; P = long long unsigned int; size_t = long long unsigned int]': C:/Users/biocbuild/bbs-3.14-bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:650:73: required from 'beachmat::sparse_index<OUT, int> beachmat::SparseArraySeed_reader<V, TIT>::get_row(size_t, ALT, int*, size_t, size_t) [with OUT = const int*; ALT = int*; V = Rcpp::Vector<10, Rcpp::PreserveStorage>; TIT = const int*; size_t = long long unsigned int]' C:/Users/biocbuild/bbs-3.14-bioc/R/library/beachmat/include/beachmat3/lin_matrix.h:596:82: required from 'beachmat::sparse_index<const int*, int> beachmat::lin_SparseArraySeed<V, TIT>::get_row(size_t, int*, int*, size_t, size_t) [with V = Rcpp::Vector<10, Rcpp::PreserveStorage>; TIT = const int*; size_t = long long unsigned int]' C:/Users/biocbuild/bbs-3.14-bioc/R/library/beachmat/include/beachmat3/lin_matrix.h:595:35: required from here C:/Users/biocbuild/bbs-3.14-bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:250:22: warning: comparison of integer expressions of different signedness: 'const int' and 'const long long unsigned int' [-Wsign-compare] C:/Users/biocbuild/bbs-3.14-bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h: In instantiation of 'beachmat::sparse_index<OUT, I> beachmat::Csparse_core<TIT, I, P>::get_row(size_t, ALT, I*, size_t, size_t) [with OUT = const double*; ALT = double*; TIT = const int*; I = int; P = long long unsigned int; size_t = long long unsigned int]': C:/Users/biocbuild/bbs-3.14-bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:650:73: required from 'beachmat::sparse_index<OUT, int> beachmat::SparseArraySeed_reader<V, TIT>::get_row(size_t, ALT, int*, size_t, size_t) [with OUT = const double*; ALT = double*; V = Rcpp::Vector<10, Rcpp::PreserveStorage>; TIT = const int*; size_t = long long unsigned int]' C:/Users/biocbuild/bbs-3.14-bioc/R/library/beachmat/include/beachmat3/lin_matrix.h:602:85: required from 'beachmat::sparse_index<const double*, int> beachmat::lin_SparseArraySeed<V, TIT>::get_row(size_t, double*, int*, size_t, size_t) [with V = Rcpp::Vector<10, Rcpp::PreserveStorage>; TIT = const int*; size_t = long long unsigned int]' C:/Users/biocbuild/bbs-3.14-bioc/R/library/beachmat/include/beachmat3/lin_matrix.h:601:38: required from here C:/Users/biocbuild/bbs-3.14-bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:250:22: warning: comparison of integer expressions of different signedness: 'const int' and 'const long long unsigned int' [-Wsign-compare] "C:/rtools40/mingw64/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I../inst/include/ -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/Rcpp/include' -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/beachmat/include' -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c downsample_counts.cpp -o downsample_counts.o In file included from C:/Users/biocbuild/bbs-3.14-bioc/R/library/beachmat/include/beachmat3/lin_matrix.h:12, from C:/Users/biocbuild/bbs-3.14-bioc/R/library/beachmat/include/beachmat3/read_lin_block.h:11, from C:/Users/biocbuild/bbs-3.14-bioc/R/library/beachmat/include/beachmat3/beachmat.h:24, from downsample_counts.cpp:2: C:/Users/biocbuild/bbs-3.14-bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h: In instantiation of 'beachmat::SparseArraySeed_reader<V, TIT>::SparseArraySeed_reader(Rcpp::RObject) [with V = Rcpp::Vector<13>; TIT = const int*; Rcpp::RObject = Rcpp::RObject_Impl<Rcpp::PreserveStorage>]': C:/Users/biocbuild/bbs-3.14-bioc/R/library/beachmat/include/beachmat3/lin_matrix.h:561:56: required from 'beachmat::lin_SparseArraySeed<V, TIT>::lin_SparseArraySeed(Rcpp::RObject) [with V = Rcpp::Vector<13>; TIT = const int*; Rcpp::RObject = Rcpp::RObject_Impl<Rcpp::PreserveStorage>]' C:/Users/biocbuild/bbs-3.14-bioc/R/library/beachmat/include/beachmat3/read_lin_block.h:36:39: required from 'std::unique_ptr<_Codecvt> beachmat::read_lin_sparse_block_raw(Rcpp::RObject) [with M = beachmat::lin_matrix; Rcpp::RObject = Rcpp::RObject_Impl<Rcpp::PreserveStorage>]' C:/Users/biocbuild/bbs-3.14-bioc/R/library/beachmat/include/beachmat3/read_lin_block.h:65:63: required from here C:/Users/biocbuild/bbs-3.14-bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:535:17: warning: comparison of integer expressions of different signedness: 'const size_t' {aka 'const long long unsigned int'} and 'R_xlen_t' {aka 'long long int'} [-Wsign-compare] if (nnz != x.size()) { C:/Users/biocbuild/bbs-3.14-bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:551:45: warning: comparison of integer expressions of different signedness: 'int' and 'const size_t' {aka 'const long long unsigned int'} [-Wsign-compare] if (lastR <= 0 || lastR > NR || lastC <= 0 || lastC > NC) { ~~~~~~^~~~ C:/Users/biocbuild/bbs-3.14-bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:551:73: warning: comparison of integer expressions of different signedness: 'int' and 'const size_t' {aka 'const long long unsigned int'} [-Wsign-compare] if (lastR <= 0 || lastR > NR || lastC <= 0 || lastC > NC) { ~~~~~~^~~~ C:/Users/biocbuild/bbs-3.14-bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:593:35: warning: comparison of integer expressions of different signedness: 'int' and 'const size_t' {aka 'const long long unsigned int'} [-Wsign-compare] for (int v = 0; v < nnz; ++v, ++rowIt, ++colIt, ++xIt) { ~~^~~~~ C:/Users/biocbuild/bbs-3.14-bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h: In instantiation of 'beachmat::SparseArraySeed_reader<V, TIT>::SparseArraySeed_reader(Rcpp::RObject) [with V = Rcpp::Vector<14, Rcpp::PreserveStorage>; TIT = const double*; Rcpp::RObject = Rcpp::RObject_Impl<Rcpp::PreserveStorage>]': C:/Users/biocbuild/bbs-3.14-bioc/R/library/beachmat/include/beachmat3/lin_matrix.h:561:56: required from 'beachmat::lin_SparseArraySeed<V, TIT>::lin_SparseArraySeed(Rcpp::RObject) [with V = Rcpp::Vector<14, Rcpp::PreserveStorage>; TIT = const double*; Rcpp::RObject = Rcpp::RObject_Impl<Rcpp::PreserveStorage>]' C:/Users/biocbuild/bbs-3.14-bioc/R/library/beachmat/include/beachmat3/read_lin_block.h:38:39: required from 'std::unique_ptr<_Codecvt> beachmat::read_lin_sparse_block_raw(Rcpp::RObject) [with M = beachmat::lin_matrix; Rcpp::RObject = Rcpp::RObject_Impl<Rcpp::PreserveStorage>]' C:/Users/biocbuild/bbs-3.14-bioc/R/library/beachmat/include/beachmat3/read_lin_block.h:65:63: required from here C:/Users/biocbuild/bbs-3.14-bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:535:17: warning: comparison of integer expressions of different signedness: 'const size_t' {aka 'const long long unsigned int'} and 'R_xlen_t' {aka 'long long int'} [-Wsign-compare] if (nnz != x.size()) { C:/Users/biocbuild/bbs-3.14-bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:551:45: warning: comparison of integer expressions of different signedness: 'int' and 'const size_t' {aka 'const long long unsigned int'} [-Wsign-compare] if (lastR <= 0 || lastR > NR || lastC <= 0 || lastC > NC) { ~~~~~~^~~~ C:/Users/biocbuild/bbs-3.14-bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:551:73: warning: comparison of integer expressions of different signedness: 'int' and 'const size_t' {aka 'const long long unsigned int'} [-Wsign-compare] if (lastR <= 0 || lastR > NR || lastC <= 0 || lastC > NC) { ~~~~~~^~~~ C:/Users/biocbuild/bbs-3.14-bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:593:35: warning: comparison of integer expressions of different signedness: 'int' and 'const size_t' {aka 'const long long unsigned int'} [-Wsign-compare] for (int v = 0; v < nnz; ++v, ++rowIt, ++colIt, ++xIt) { ~~^~~~~ C:/Users/biocbuild/bbs-3.14-bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h: In instantiation of 'beachmat::SparseArraySeed_reader<V, TIT>::SparseArraySeed_reader(Rcpp::RObject) [with V = Rcpp::Vector<10, Rcpp::PreserveStorage>; TIT = const int*; Rcpp::RObject = Rcpp::RObject_Impl<Rcpp::PreserveStorage>]': C:/Users/biocbuild/bbs-3.14-bioc/R/library/beachmat/include/beachmat3/lin_matrix.h:561:56: required from 'beachmat::lin_SparseArraySeed<V, TIT>::lin_SparseArraySeed(Rcpp::RObject) [with V = Rcpp::Vector<10, Rcpp::PreserveStorage>; TIT = const int*; Rcpp::RObject = Rcpp::RObject_Impl<Rcpp::PreserveStorage>]' C:/Users/biocbuild/bbs-3.14-bioc/R/library/beachmat/include/beachmat3/read_lin_block.h:40:39: required from 'std::unique_ptr<_Codecvt> beachmat::read_lin_sparse_block_raw(Rcpp::RObject) [with M = beachmat::lin_matrix; Rcpp::RObject = Rcpp::RObject_Impl<Rcpp::PreserveStorage>]' C:/Users/biocbuild/bbs-3.14-bioc/R/library/beachmat/include/beachmat3/read_lin_block.h:65:63: required from here C:/Users/biocbuild/bbs-3.14-bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:535:17: warning: comparison of integer expressions of different signedness: 'const size_t' {aka 'const long long unsigned int'} and 'R_xlen_t' {aka 'long long int'} [-Wsign-compare] if (nnz != x.size()) { C:/Users/biocbuild/bbs-3.14-bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:551:45: warning: comparison of integer expressions of different signedness: 'int' and 'const size_t' {aka 'const long long unsigned int'} [-Wsign-compare] if (lastR <= 0 || lastR > NR || lastC <= 0 || lastC > NC) { ~~~~~~^~~~ C:/Users/biocbuild/bbs-3.14-bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:551:73: warning: comparison of integer expressions of different signedness: 'int' and 'const size_t' {aka 'const long long unsigned int'} [-Wsign-compare] if (lastR <= 0 || lastR > NR || lastC <= 0 || lastC > NC) { ~~~~~~^~~~ C:/Users/biocbuild/bbs-3.14-bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:593:35: warning: comparison of integer expressions of different signedness: 'int' and 'const size_t' {aka 'const long long unsigned int'} [-Wsign-compare] for (int v = 0; v < nnz; ++v, ++rowIt, ++colIt, ++xIt) { ~~^~~~~ C:/Users/biocbuild/bbs-3.14-bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h: In instantiation of 'beachmat::sparse_index<OUT, I> beachmat::Csparse_core<TIT, I, P>::get_row(size_t, ALT, I*, size_t, size_t) [with OUT = const int*; ALT = int*; TIT = const double*; I = int; P = long long unsigned int; size_t = long long unsigned int]': C:/Users/biocbuild/bbs-3.14-bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:650:73: required from 'beachmat::sparse_index<OUT, int> beachmat::SparseArraySeed_reader<V, TIT>::get_row(size_t, ALT, int*, size_t, size_t) [with OUT = const int*; ALT = int*; V = Rcpp::Vector<14, Rcpp::PreserveStorage>; TIT = const double*; size_t = long long unsigned int]' C:/Users/biocbuild/bbs-3.14-bioc/R/library/beachmat/include/beachmat3/lin_matrix.h:596:82: required from 'beachmat::sparse_index<const int*, int> beachmat::lin_SparseArraySeed<V, TIT>::get_row(size_t, int*, int*, size_t, size_t) [with V = Rcpp::Vector<14, Rcpp::PreserveStorage>; TIT = const double*; size_t = long long unsigned int]' C:/Users/biocbuild/bbs-3.14-bioc/R/library/beachmat/include/beachmat3/lin_matrix.h:595:35: required from here C:/Users/biocbuild/bbs-3.14-bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:250:22: warning: comparison of integer expressions of different signedness: 'const int' and 'const long long unsigned int' [-Wsign-compare] if (idex != *pIt && static_cast<size_t>(i[idex]) == r) { ~~~~~^~~~~~~ C:/Users/biocbuild/bbs-3.14-bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h: In instantiation of 'beachmat::sparse_index<OUT, I> beachmat::Csparse_core<TIT, I, P>::get_row(size_t, ALT, I*, size_t, size_t) [with OUT = const double*; ALT = double*; TIT = const double*; I = int; P = long long unsigned int; size_t = long long unsigned int]': C:/Users/biocbuild/bbs-3.14-bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:650:73: required from 'beachmat::sparse_index<OUT, int> beachmat::SparseArraySeed_reader<V, TIT>::get_row(size_t, ALT, int*, size_t, size_t) [with OUT = const double*; ALT = double*; V = Rcpp::Vector<14, Rcpp::PreserveStorage>; TIT = const double*; size_t = long long unsigned int]' C:/Users/biocbuild/bbs-3.14-bioc/R/library/beachmat/include/beachmat3/lin_matrix.h:602:85: required from 'beachmat::sparse_index<const double*, int> beachmat::lin_SparseArraySeed<V, TIT>::get_row(size_t, double*, int*, size_t, size_t) [with V = Rcpp::Vector<14, Rcpp::PreserveStorage>; TIT = const double*; size_t = long long unsigned int]' C:/Users/biocbuild/bbs-3.14-bioc/R/library/beachmat/include/beachmat3/lin_matrix.h:601:38: required from here C:/Users/biocbuild/bbs-3.14-bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:250:22: warning: comparison of integer expressions of different signedness: 'const int' and 'const long long unsigned int' [-Wsign-compare] C:/Users/biocbuild/bbs-3.14-bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h: In instantiation of 'beachmat::sparse_index<OUT, I> beachmat::Csparse_core<TIT, I, P>::get_row(size_t, ALT, I*, size_t, size_t) [with OUT = const int*; ALT = int*; TIT = const int*; I = int; P = long long unsigned int; size_t = long long unsigned int]': C:/Users/biocbuild/bbs-3.14-bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:650:73: required from 'beachmat::sparse_index<OUT, int> beachmat::SparseArraySeed_reader<V, TIT>::get_row(size_t, ALT, int*, size_t, size_t) [with OUT = const int*; ALT = int*; V = Rcpp::Vector<10, Rcpp::PreserveStorage>; TIT = const int*; size_t = long long unsigned int]' C:/Users/biocbuild/bbs-3.14-bioc/R/library/beachmat/include/beachmat3/lin_matrix.h:596:82: required from 'beachmat::sparse_index<const int*, int> beachmat::lin_SparseArraySeed<V, TIT>::get_row(size_t, int*, int*, size_t, size_t) [with V = Rcpp::Vector<10, Rcpp::PreserveStorage>; TIT = const int*; size_t = long long unsigned int]' C:/Users/biocbuild/bbs-3.14-bioc/R/library/beachmat/include/beachmat3/lin_matrix.h:595:35: required from here C:/Users/biocbuild/bbs-3.14-bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:250:22: warning: comparison of integer expressions of different signedness: 'const int' and 'const long long unsigned int' [-Wsign-compare] C:/Users/biocbuild/bbs-3.14-bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h: In instantiation of 'beachmat::sparse_index<OUT, I> beachmat::Csparse_core<TIT, I, P>::get_row(size_t, ALT, I*, size_t, size_t) [with OUT = const double*; ALT = double*; TIT = const int*; I = int; P = long long unsigned int; size_t = long long unsigned int]': C:/Users/biocbuild/bbs-3.14-bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:650:73: required from 'beachmat::sparse_index<OUT, int> beachmat::SparseArraySeed_reader<V, TIT>::get_row(size_t, ALT, int*, size_t, size_t) [with OUT = const double*; ALT = double*; V = Rcpp::Vector<10, Rcpp::PreserveStorage>; TIT = const int*; size_t = long long unsigned int]' C:/Users/biocbuild/bbs-3.14-bioc/R/library/beachmat/include/beachmat3/lin_matrix.h:602:85: required from 'beachmat::sparse_index<const double*, int> beachmat::lin_SparseArraySeed<V, TIT>::get_row(size_t, double*, int*, size_t, size_t) [with V = Rcpp::Vector<10, Rcpp::PreserveStorage>; TIT = const int*; size_t = long long unsigned int]' C:/Users/biocbuild/bbs-3.14-bioc/R/library/beachmat/include/beachmat3/lin_matrix.h:601:38: required from here C:/Users/biocbuild/bbs-3.14-bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:250:22: warning: comparison of integer expressions of different signedness: 'const int' and 'const long long unsigned int' [-Wsign-compare] "C:/rtools40/mingw64/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I../inst/include/ -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/Rcpp/include' -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/beachmat/include' -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c fit_linear_model.cpp -o fit_linear_model.o In file included from C:/Users/biocbuild/bbs-3.14-bioc/R/library/beachmat/include/beachmat3/lin_matrix.h:12, from C:/Users/biocbuild/bbs-3.14-bioc/R/library/beachmat/include/beachmat3/read_lin_block.h:11, from C:/Users/biocbuild/bbs-3.14-bioc/R/library/beachmat/include/beachmat3/beachmat.h:24, from fit_linear_model.cpp:2: C:/Users/biocbuild/bbs-3.14-bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h: In instantiation of 'beachmat::SparseArraySeed_reader<V, TIT>::SparseArraySeed_reader(Rcpp::RObject) [with V = Rcpp::Vector<13>; TIT = const int*; Rcpp::RObject = Rcpp::RObject_Impl<Rcpp::PreserveStorage>]': C:/Users/biocbuild/bbs-3.14-bioc/R/library/beachmat/include/beachmat3/lin_matrix.h:561:56: required from 'beachmat::lin_SparseArraySeed<V, TIT>::lin_SparseArraySeed(Rcpp::RObject) [with V = Rcpp::Vector<13>; TIT = const int*; Rcpp::RObject = Rcpp::RObject_Impl<Rcpp::PreserveStorage>]' C:/Users/biocbuild/bbs-3.14-bioc/R/library/beachmat/include/beachmat3/read_lin_block.h:36:39: required from 'std::unique_ptr<_Codecvt> beachmat::read_lin_sparse_block_raw(Rcpp::RObject) [with M = beachmat::lin_matrix; Rcpp::RObject = Rcpp::RObject_Impl<Rcpp::PreserveStorage>]' C:/Users/biocbuild/bbs-3.14-bioc/R/library/beachmat/include/beachmat3/read_lin_block.h:65:63: required from here C:/Users/biocbuild/bbs-3.14-bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:535:17: warning: comparison of integer expressions of different signedness: 'const size_t' {aka 'const long long unsigned int'} and 'R_xlen_t' {aka 'long long int'} [-Wsign-compare] if (nnz != x.size()) { C:/Users/biocbuild/bbs-3.14-bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:551:45: warning: comparison of integer expressions of different signedness: 'int' and 'const size_t' {aka 'const long long unsigned int'} [-Wsign-compare] if (lastR <= 0 || lastR > NR || lastC <= 0 || lastC > NC) { ~~~~~~^~~~ C:/Users/biocbuild/bbs-3.14-bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:551:73: warning: comparison of integer expressions of different signedness: 'int' and 'const size_t' {aka 'const long long unsigned int'} [-Wsign-compare] if (lastR <= 0 || lastR > NR || lastC <= 0 || lastC > NC) { ~~~~~~^~~~ C:/Users/biocbuild/bbs-3.14-bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:593:35: warning: comparison of integer expressions of different signedness: 'int' and 'const size_t' {aka 'const long long unsigned int'} [-Wsign-compare] for (int v = 0; v < nnz; ++v, ++rowIt, ++colIt, ++xIt) { ~~^~~~~ C:/Users/biocbuild/bbs-3.14-bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h: In instantiation of 'beachmat::SparseArraySeed_reader<V, TIT>::SparseArraySeed_reader(Rcpp::RObject) [with V = Rcpp::Vector<14, Rcpp::PreserveStorage>; TIT = const double*; Rcpp::RObject = Rcpp::RObject_Impl<Rcpp::PreserveStorage>]': C:/Users/biocbuild/bbs-3.14-bioc/R/library/beachmat/include/beachmat3/lin_matrix.h:561:56: required from 'beachmat::lin_SparseArraySeed<V, TIT>::lin_SparseArraySeed(Rcpp::RObject) [with V = Rcpp::Vector<14, Rcpp::PreserveStorage>; TIT = const double*; Rcpp::RObject = Rcpp::RObject_Impl<Rcpp::PreserveStorage>]' C:/Users/biocbuild/bbs-3.14-bioc/R/library/beachmat/include/beachmat3/read_lin_block.h:38:39: required from 'std::unique_ptr<_Codecvt> beachmat::read_lin_sparse_block_raw(Rcpp::RObject) [with M = beachmat::lin_matrix; Rcpp::RObject = Rcpp::RObject_Impl<Rcpp::PreserveStorage>]' C:/Users/biocbuild/bbs-3.14-bioc/R/library/beachmat/include/beachmat3/read_lin_block.h:65:63: required from here C:/Users/biocbuild/bbs-3.14-bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:535:17: warning: comparison of integer expressions of different signedness: 'const size_t' {aka 'const long long unsigned int'} and 'R_xlen_t' {aka 'long long int'} [-Wsign-compare] if (nnz != x.size()) { C:/Users/biocbuild/bbs-3.14-bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:551:45: warning: comparison of integer expressions of different signedness: 'int' and 'const size_t' {aka 'const long long unsigned int'} [-Wsign-compare] if (lastR <= 0 || lastR > NR || lastC <= 0 || lastC > NC) { ~~~~~~^~~~ C:/Users/biocbuild/bbs-3.14-bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:551:73: warning: comparison of integer expressions of different signedness: 'int' and 'const size_t' {aka 'const long long unsigned int'} [-Wsign-compare] if (lastR <= 0 || lastR > NR || lastC <= 0 || lastC > NC) { ~~~~~~^~~~ C:/Users/biocbuild/bbs-3.14-bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:593:35: warning: comparison of integer expressions of different signedness: 'int' and 'const size_t' {aka 'const long long unsigned int'} [-Wsign-compare] for (int v = 0; v < nnz; ++v, ++rowIt, ++colIt, ++xIt) { ~~^~~~~ C:/Users/biocbuild/bbs-3.14-bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h: In instantiation of 'beachmat::SparseArraySeed_reader<V, TIT>::SparseArraySeed_reader(Rcpp::RObject) [with V = Rcpp::Vector<10, Rcpp::PreserveStorage>; TIT = const int*; Rcpp::RObject = Rcpp::RObject_Impl<Rcpp::PreserveStorage>]': C:/Users/biocbuild/bbs-3.14-bioc/R/library/beachmat/include/beachmat3/lin_matrix.h:561:56: required from 'beachmat::lin_SparseArraySeed<V, TIT>::lin_SparseArraySeed(Rcpp::RObject) [with V = Rcpp::Vector<10, Rcpp::PreserveStorage>; TIT = const int*; Rcpp::RObject = Rcpp::RObject_Impl<Rcpp::PreserveStorage>]' C:/Users/biocbuild/bbs-3.14-bioc/R/library/beachmat/include/beachmat3/read_lin_block.h:40:39: required from 'std::unique_ptr<_Codecvt> beachmat::read_lin_sparse_block_raw(Rcpp::RObject) [with M = beachmat::lin_matrix; Rcpp::RObject = Rcpp::RObject_Impl<Rcpp::PreserveStorage>]' C:/Users/biocbuild/bbs-3.14-bioc/R/library/beachmat/include/beachmat3/read_lin_block.h:65:63: required from here C:/Users/biocbuild/bbs-3.14-bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:535:17: warning: comparison of integer expressions of different signedness: 'const size_t' {aka 'const long long unsigned int'} and 'R_xlen_t' {aka 'long long int'} [-Wsign-compare] if (nnz != x.size()) { C:/Users/biocbuild/bbs-3.14-bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:551:45: warning: comparison of integer expressions of different signedness: 'int' and 'const size_t' {aka 'const long long unsigned int'} [-Wsign-compare] if (lastR <= 0 || lastR > NR || lastC <= 0 || lastC > NC) { ~~~~~~^~~~ C:/Users/biocbuild/bbs-3.14-bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:551:73: warning: comparison of integer expressions of different signedness: 'int' and 'const size_t' {aka 'const long long unsigned int'} [-Wsign-compare] if (lastR <= 0 || lastR > NR || lastC <= 0 || lastC > NC) { ~~~~~~^~~~ C:/Users/biocbuild/bbs-3.14-bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:593:35: warning: comparison of integer expressions of different signedness: 'int' and 'const size_t' {aka 'const long long unsigned int'} [-Wsign-compare] for (int v = 0; v < nnz; ++v, ++rowIt, ++colIt, ++xIt) { ~~^~~~~ C:/Users/biocbuild/bbs-3.14-bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h: In instantiation of 'beachmat::sparse_index<OUT, I> beachmat::Csparse_core<TIT, I, P>::get_row(size_t, ALT, I*, size_t, size_t) [with OUT = const int*; ALT = int*; TIT = const double*; I = int; P = long long unsigned int; size_t = long long unsigned int]': C:/Users/biocbuild/bbs-3.14-bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:650:73: required from 'beachmat::sparse_index<OUT, int> beachmat::SparseArraySeed_reader<V, TIT>::get_row(size_t, ALT, int*, size_t, size_t) [with OUT = const int*; ALT = int*; V = Rcpp::Vector<14, Rcpp::PreserveStorage>; TIT = const double*; size_t = long long unsigned int]' C:/Users/biocbuild/bbs-3.14-bioc/R/library/beachmat/include/beachmat3/lin_matrix.h:596:82: required from 'beachmat::sparse_index<const int*, int> beachmat::lin_SparseArraySeed<V, TIT>::get_row(size_t, int*, int*, size_t, size_t) [with V = Rcpp::Vector<14, Rcpp::PreserveStorage>; TIT = const double*; size_t = long long unsigned int]' C:/Users/biocbuild/bbs-3.14-bioc/R/library/beachmat/include/beachmat3/lin_matrix.h:595:35: required from here C:/Users/biocbuild/bbs-3.14-bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:250:22: warning: comparison of integer expressions of different signedness: 'const int' and 'const long long unsigned int' [-Wsign-compare] if (idex != *pIt && static_cast<size_t>(i[idex]) == r) { ~~~~~^~~~~~~ C:/Users/biocbuild/bbs-3.14-bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h: In instantiation of 'beachmat::sparse_index<OUT, I> beachmat::Csparse_core<TIT, I, P>::get_row(size_t, ALT, I*, size_t, size_t) [with OUT = const double*; ALT = double*; TIT = const double*; I = int; P = long long unsigned int; size_t = long long unsigned int]': C:/Users/biocbuild/bbs-3.14-bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:650:73: required from 'beachmat::sparse_index<OUT, int> beachmat::SparseArraySeed_reader<V, TIT>::get_row(size_t, ALT, int*, size_t, size_t) [with OUT = const double*; ALT = double*; V = Rcpp::Vector<14, Rcpp::PreserveStorage>; TIT = const double*; size_t = long long unsigned int]' C:/Users/biocbuild/bbs-3.14-bioc/R/library/beachmat/include/beachmat3/lin_matrix.h:602:85: required from 'beachmat::sparse_index<const double*, int> beachmat::lin_SparseArraySeed<V, TIT>::get_row(size_t, double*, int*, size_t, size_t) [with V = Rcpp::Vector<14, Rcpp::PreserveStorage>; TIT = const double*; size_t = long long unsigned int]' C:/Users/biocbuild/bbs-3.14-bioc/R/library/beachmat/include/beachmat3/lin_matrix.h:601:38: required from here C:/Users/biocbuild/bbs-3.14-bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:250:22: warning: comparison of integer expressions of different signedness: 'const int' and 'const long long unsigned int' [-Wsign-compare] C:/Users/biocbuild/bbs-3.14-bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h: In instantiation of 'beachmat::sparse_index<OUT, I> beachmat::Csparse_core<TIT, I, P>::get_row(size_t, ALT, I*, size_t, size_t) [with OUT = const int*; ALT = int*; TIT = const int*; I = int; P = long long unsigned int; size_t = long long unsigned int]': C:/Users/biocbuild/bbs-3.14-bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:650:73: required from 'beachmat::sparse_index<OUT, int> beachmat::SparseArraySeed_reader<V, TIT>::get_row(size_t, ALT, int*, size_t, size_t) [with OUT = const int*; ALT = int*; V = Rcpp::Vector<10, Rcpp::PreserveStorage>; TIT = const int*; size_t = long long unsigned int]' C:/Users/biocbuild/bbs-3.14-bioc/R/library/beachmat/include/beachmat3/lin_matrix.h:596:82: required from 'beachmat::sparse_index<const int*, int> beachmat::lin_SparseArraySeed<V, TIT>::get_row(size_t, int*, int*, size_t, size_t) [with V = Rcpp::Vector<10, Rcpp::PreserveStorage>; TIT = const int*; size_t = long long unsigned int]' C:/Users/biocbuild/bbs-3.14-bioc/R/library/beachmat/include/beachmat3/lin_matrix.h:595:35: required from here C:/Users/biocbuild/bbs-3.14-bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:250:22: warning: comparison of integer expressions of different signedness: 'const int' and 'const long long unsigned int' [-Wsign-compare] C:/Users/biocbuild/bbs-3.14-bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h: In instantiation of 'beachmat::sparse_index<OUT, I> beachmat::Csparse_core<TIT, I, P>::get_row(size_t, ALT, I*, size_t, size_t) [with OUT = const double*; ALT = double*; TIT = const int*; I = int; P = long long unsigned int; size_t = long long unsigned int]': C:/Users/biocbuild/bbs-3.14-bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:650:73: required from 'beachmat::sparse_index<OUT, int> beachmat::SparseArraySeed_reader<V, TIT>::get_row(size_t, ALT, int*, size_t, size_t) [with OUT = const double*; ALT = double*; V = Rcpp::Vector<10, Rcpp::PreserveStorage>; TIT = const int*; size_t = long long unsigned int]' C:/Users/biocbuild/bbs-3.14-bioc/R/library/beachmat/include/beachmat3/lin_matrix.h:602:85: required from 'beachmat::sparse_index<const double*, int> beachmat::lin_SparseArraySeed<V, TIT>::get_row(size_t, double*, int*, size_t, size_t) [with V = Rcpp::Vector<10, Rcpp::PreserveStorage>; TIT = const int*; size_t = long long unsigned int]' C:/Users/biocbuild/bbs-3.14-bioc/R/library/beachmat/include/beachmat3/lin_matrix.h:601:38: required from here C:/Users/biocbuild/bbs-3.14-bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:250:22: warning: comparison of integer expressions of different signedness: 'const int' and 'const long long unsigned int' [-Wsign-compare] "C:/rtools40/mingw64/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I../inst/include/ -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/Rcpp/include' -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/beachmat/include' -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c pool_size_factors.cpp -o pool_size_factors.o pool_size_factors.cpp: In function 'Rcpp::List pool_size_factors(Rcpp::RObject, Rcpp::NumericVector, Rcpp::IntegerVector, Rcpp::IntegerVector)': pool_size_factors.cpp:56:15: warning: comparison of integer expressions of different signedness: 'const size_t' {aka 'const long long unsigned int'} and 'R_xlen_t' {aka 'long long int'} [-Wsign-compare] if (ngenes!=pseudo_cell.size()) { ~~~~~~^~~~~~~~~~~~~~~~~~~~ pool_size_factors.cpp:61:22: warning: comparison of integer expressions of different signedness: 'R_xlen_t' {aka 'long long int'} and 'long long unsigned int' [-Wsign-compare] if (order.size() < ncells*2-1) { ~~~~~~~~~~~~~^~~~~~~~~~~~ pool_size_factors.cpp:170:37: warning: comparison of integer expressions of different signedness: 'int' and 'long long unsigned int' [-Wsign-compare] for (auto i=0; i<n; ++i, ++val, ++rows) { ~^~ In file included from C:/Users/biocbuild/bbs-3.14-bioc/R/library/beachmat/include/beachmat3/lin_matrix.h:12, from C:/Users/biocbuild/bbs-3.14-bioc/R/library/beachmat/include/beachmat3/read_lin_block.h:11, from C:/Users/biocbuild/bbs-3.14-bioc/R/library/beachmat/include/beachmat3/beachmat.h:24, from pool_size_factors.cpp:2: C:/Users/biocbuild/bbs-3.14-bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h: In instantiation of 'beachmat::SparseArraySeed_reader<V, TIT>::SparseArraySeed_reader(Rcpp::RObject) [with V = Rcpp::Vector<13>; TIT = const int*; Rcpp::RObject = Rcpp::RObject_Impl<Rcpp::PreserveStorage>]': C:/Users/biocbuild/bbs-3.14-bioc/R/library/beachmat/include/beachmat3/lin_matrix.h:561:56: required from 'beachmat::lin_SparseArraySeed<V, TIT>::lin_SparseArraySeed(Rcpp::RObject) [with V = Rcpp::Vector<13>; TIT = const int*; Rcpp::RObject = Rcpp::RObject_Impl<Rcpp::PreserveStorage>]' C:/Users/biocbuild/bbs-3.14-bioc/R/library/beachmat/include/beachmat3/read_lin_block.h:36:39: required from 'std::unique_ptr<_Codecvt> beachmat::read_lin_sparse_block_raw(Rcpp::RObject) [with M = beachmat::lin_matrix; Rcpp::RObject = Rcpp::RObject_Impl<Rcpp::PreserveStorage>]' C:/Users/biocbuild/bbs-3.14-bioc/R/library/beachmat/include/beachmat3/read_lin_block.h:65:63: required from here C:/Users/biocbuild/bbs-3.14-bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:535:17: warning: comparison of integer expressions of different signedness: 'const size_t' {aka 'const long long unsigned int'} and 'R_xlen_t' {aka 'long long int'} [-Wsign-compare] if (nnz != x.size()) { C:/Users/biocbuild/bbs-3.14-bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:551:45: warning: comparison of integer expressions of different signedness: 'int' and 'const size_t' {aka 'const long long unsigned int'} [-Wsign-compare] if (lastR <= 0 || lastR > NR || lastC <= 0 || lastC > NC) { ~~~~~~^~~~ C:/Users/biocbuild/bbs-3.14-bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:551:73: warning: comparison of integer expressions of different signedness: 'int' and 'const size_t' {aka 'const long long unsigned int'} [-Wsign-compare] if (lastR <= 0 || lastR > NR || lastC <= 0 || lastC > NC) { ~~~~~~^~~~ C:/Users/biocbuild/bbs-3.14-bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:593:35: warning: comparison of integer expressions of different signedness: 'int' and 'const size_t' {aka 'const long long unsigned int'} [-Wsign-compare] for (int v = 0; v < nnz; ++v, ++rowIt, ++colIt, ++xIt) { ~~^~~~~ C:/Users/biocbuild/bbs-3.14-bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h: In instantiation of 'beachmat::SparseArraySeed_reader<V, TIT>::SparseArraySeed_reader(Rcpp::RObject) [with V = Rcpp::Vector<14, Rcpp::PreserveStorage>; TIT = const double*; Rcpp::RObject = Rcpp::RObject_Impl<Rcpp::PreserveStorage>]': C:/Users/biocbuild/bbs-3.14-bioc/R/library/beachmat/include/beachmat3/lin_matrix.h:561:56: required from 'beachmat::lin_SparseArraySeed<V, TIT>::lin_SparseArraySeed(Rcpp::RObject) [with V = Rcpp::Vector<14, Rcpp::PreserveStorage>; TIT = const double*; Rcpp::RObject = Rcpp::RObject_Impl<Rcpp::PreserveStorage>]' C:/Users/biocbuild/bbs-3.14-bioc/R/library/beachmat/include/beachmat3/read_lin_block.h:38:39: required from 'std::unique_ptr<_Codecvt> beachmat::read_lin_sparse_block_raw(Rcpp::RObject) [with M = beachmat::lin_matrix; Rcpp::RObject = Rcpp::RObject_Impl<Rcpp::PreserveStorage>]' C:/Users/biocbuild/bbs-3.14-bioc/R/library/beachmat/include/beachmat3/read_lin_block.h:65:63: required from here C:/Users/biocbuild/bbs-3.14-bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:535:17: warning: comparison of integer expressions of different signedness: 'const size_t' {aka 'const long long unsigned int'} and 'R_xlen_t' {aka 'long long int'} [-Wsign-compare] if (nnz != x.size()) { C:/Users/biocbuild/bbs-3.14-bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:551:45: warning: comparison of integer expressions of different signedness: 'int' and 'const size_t' {aka 'const long long unsigned int'} [-Wsign-compare] if (lastR <= 0 || lastR > NR || lastC <= 0 || lastC > NC) { ~~~~~~^~~~ C:/Users/biocbuild/bbs-3.14-bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:551:73: warning: comparison of integer expressions of different signedness: 'int' and 'const size_t' {aka 'const long long unsigned int'} [-Wsign-compare] if (lastR <= 0 || lastR > NR || lastC <= 0 || lastC > NC) { ~~~~~~^~~~ C:/Users/biocbuild/bbs-3.14-bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:593:35: warning: comparison of integer expressions of different signedness: 'int' and 'const size_t' {aka 'const long long unsigned int'} [-Wsign-compare] for (int v = 0; v < nnz; ++v, ++rowIt, ++colIt, ++xIt) { ~~^~~~~ C:/Users/biocbuild/bbs-3.14-bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h: In instantiation of 'beachmat::SparseArraySeed_reader<V, TIT>::SparseArraySeed_reader(Rcpp::RObject) [with V = Rcpp::Vector<10, Rcpp::PreserveStorage>; TIT = const int*; Rcpp::RObject = Rcpp::RObject_Impl<Rcpp::PreserveStorage>]': C:/Users/biocbuild/bbs-3.14-bioc/R/library/beachmat/include/beachmat3/lin_matrix.h:561:56: required from 'beachmat::lin_SparseArraySeed<V, TIT>::lin_SparseArraySeed(Rcpp::RObject) [with V = Rcpp::Vector<10, Rcpp::PreserveStorage>; TIT = const int*; Rcpp::RObject = Rcpp::RObject_Impl<Rcpp::PreserveStorage>]' C:/Users/biocbuild/bbs-3.14-bioc/R/library/beachmat/include/beachmat3/read_lin_block.h:40:39: required from 'std::unique_ptr<_Codecvt> beachmat::read_lin_sparse_block_raw(Rcpp::RObject) [with M = beachmat::lin_matrix; Rcpp::RObject = Rcpp::RObject_Impl<Rcpp::PreserveStorage>]' C:/Users/biocbuild/bbs-3.14-bioc/R/library/beachmat/include/beachmat3/read_lin_block.h:65:63: required from here C:/Users/biocbuild/bbs-3.14-bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:535:17: warning: comparison of integer expressions of different signedness: 'const size_t' {aka 'const long long unsigned int'} and 'R_xlen_t' {aka 'long long int'} [-Wsign-compare] if (nnz != x.size()) { C:/Users/biocbuild/bbs-3.14-bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:551:45: warning: comparison of integer expressions of different signedness: 'int' and 'const size_t' {aka 'const long long unsigned int'} [-Wsign-compare] if (lastR <= 0 || lastR > NR || lastC <= 0 || lastC > NC) { ~~~~~~^~~~ C:/Users/biocbuild/bbs-3.14-bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:551:73: warning: comparison of integer expressions of different signedness: 'int' and 'const size_t' {aka 'const long long unsigned int'} [-Wsign-compare] if (lastR <= 0 || lastR > NR || lastC <= 0 || lastC > NC) { ~~~~~~^~~~ C:/Users/biocbuild/bbs-3.14-bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:593:35: warning: comparison of integer expressions of different signedness: 'int' and 'const size_t' {aka 'const long long unsigned int'} [-Wsign-compare] for (int v = 0; v < nnz; ++v, ++rowIt, ++colIt, ++xIt) { ~~^~~~~ C:/Users/biocbuild/bbs-3.14-bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h: In instantiation of 'beachmat::sparse_index<OUT, I> beachmat::Csparse_core<TIT, I, P>::get_row(size_t, ALT, I*, size_t, size_t) [with OUT = const int*; ALT = int*; TIT = const double*; I = int; P = long long unsigned int; size_t = long long unsigned int]': C:/Users/biocbuild/bbs-3.14-bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:650:73: required from 'beachmat::sparse_index<OUT, int> beachmat::SparseArraySeed_reader<V, TIT>::get_row(size_t, ALT, int*, size_t, size_t) [with OUT = const int*; ALT = int*; V = Rcpp::Vector<14, Rcpp::PreserveStorage>; TIT = const double*; size_t = long long unsigned int]' C:/Users/biocbuild/bbs-3.14-bioc/R/library/beachmat/include/beachmat3/lin_matrix.h:596:82: required from 'beachmat::sparse_index<const int*, int> beachmat::lin_SparseArraySeed<V, TIT>::get_row(size_t, int*, int*, size_t, size_t) [with V = Rcpp::Vector<14, Rcpp::PreserveStorage>; TIT = const double*; size_t = long long unsigned int]' C:/Users/biocbuild/bbs-3.14-bioc/R/library/beachmat/include/beachmat3/lin_matrix.h:595:35: required from here C:/Users/biocbuild/bbs-3.14-bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:250:22: warning: comparison of integer expressions of different signedness: 'const int' and 'const long long unsigned int' [-Wsign-compare] if (idex != *pIt && static_cast<size_t>(i[idex]) == r) { ~~~~~^~~~~~~ C:/Users/biocbuild/bbs-3.14-bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h: In instantiation of 'beachmat::sparse_index<OUT, I> beachmat::Csparse_core<TIT, I, P>::get_row(size_t, ALT, I*, size_t, size_t) [with OUT = const double*; ALT = double*; TIT = const double*; I = int; P = long long unsigned int; size_t = long long unsigned int]': C:/Users/biocbuild/bbs-3.14-bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:650:73: required from 'beachmat::sparse_index<OUT, int> beachmat::SparseArraySeed_reader<V, TIT>::get_row(size_t, ALT, int*, size_t, size_t) [with OUT = const double*; ALT = double*; V = Rcpp::Vector<14, Rcpp::PreserveStorage>; TIT = const double*; size_t = long long unsigned int]' C:/Users/biocbuild/bbs-3.14-bioc/R/library/beachmat/include/beachmat3/lin_matrix.h:602:85: required from 'beachmat::sparse_index<const double*, int> beachmat::lin_SparseArraySeed<V, TIT>::get_row(size_t, double*, int*, size_t, size_t) [with V = Rcpp::Vector<14, Rcpp::PreserveStorage>; TIT = const double*; size_t = long long unsigned int]' C:/Users/biocbuild/bbs-3.14-bioc/R/library/beachmat/include/beachmat3/lin_matrix.h:601:38: required from here C:/Users/biocbuild/bbs-3.14-bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:250:22: warning: comparison of integer expressions of different signedness: 'const int' and 'const long long unsigned int' [-Wsign-compare] C:/Users/biocbuild/bbs-3.14-bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h: In instantiation of 'beachmat::sparse_index<OUT, I> beachmat::Csparse_core<TIT, I, P>::get_row(size_t, ALT, I*, size_t, size_t) [with OUT = const int*; ALT = int*; TIT = const int*; I = int; P = long long unsigned int; size_t = long long unsigned int]': C:/Users/biocbuild/bbs-3.14-bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:650:73: required from 'beachmat::sparse_index<OUT, int> beachmat::SparseArraySeed_reader<V, TIT>::get_row(size_t, ALT, int*, size_t, size_t) [with OUT = const int*; ALT = int*; V = Rcpp::Vector<10, Rcpp::PreserveStorage>; TIT = const int*; size_t = long long unsigned int]' C:/Users/biocbuild/bbs-3.14-bioc/R/library/beachmat/include/beachmat3/lin_matrix.h:596:82: required from 'beachmat::sparse_index<const int*, int> beachmat::lin_SparseArraySeed<V, TIT>::get_row(size_t, int*, int*, size_t, size_t) [with V = Rcpp::Vector<10, Rcpp::PreserveStorage>; TIT = const int*; size_t = long long unsigned int]' C:/Users/biocbuild/bbs-3.14-bioc/R/library/beachmat/include/beachmat3/lin_matrix.h:595:35: required from here C:/Users/biocbuild/bbs-3.14-bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:250:22: warning: comparison of integer expressions of different signedness: 'const int' and 'const long long unsigned int' [-Wsign-compare] C:/Users/biocbuild/bbs-3.14-bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h: In instantiation of 'beachmat::sparse_index<OUT, I> beachmat::Csparse_core<TIT, I, P>::get_row(size_t, ALT, I*, size_t, size_t) [with OUT = const double*; ALT = double*; TIT = const int*; I = int; P = long long unsigned int; size_t = long long unsigned int]': C:/Users/biocbuild/bbs-3.14-bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:650:73: required from 'beachmat::sparse_index<OUT, int> beachmat::SparseArraySeed_reader<V, TIT>::get_row(size_t, ALT, int*, size_t, size_t) [with OUT = const double*; ALT = double*; V = Rcpp::Vector<10, Rcpp::PreserveStorage>; TIT = const int*; size_t = long long unsigned int]' C:/Users/biocbuild/bbs-3.14-bioc/R/library/beachmat/include/beachmat3/lin_matrix.h:602:85: required from 'beachmat::sparse_index<const double*, int> beachmat::lin_SparseArraySeed<V, TIT>::get_row(size_t, double*, int*, size_t, size_t) [with V = Rcpp::Vector<10, Rcpp::PreserveStorage>; TIT = const int*; size_t = long long unsigned int]' C:/Users/biocbuild/bbs-3.14-bioc/R/library/beachmat/include/beachmat3/lin_matrix.h:601:38: required from here C:/Users/biocbuild/bbs-3.14-bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:250:22: warning: comparison of integer expressions of different signedness: 'const int' and 'const long long unsigned int' [-Wsign-compare] "C:/rtools40/mingw64/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I../inst/include/ -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/Rcpp/include' -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/beachmat/include' -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c sum_counts.cpp -o sum_counts.o In file included from C:/Users/biocbuild/bbs-3.14-bioc/R/library/beachmat/include/beachmat3/lin_matrix.h:12, from C:/Users/biocbuild/bbs-3.14-bioc/R/library/beachmat/include/beachmat3/read_lin_block.h:11, from C:/Users/biocbuild/bbs-3.14-bioc/R/library/beachmat/include/beachmat3/beachmat.h:24, from sum_counts.cpp:2: C:/Users/biocbuild/bbs-3.14-bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h: In instantiation of 'beachmat::SparseArraySeed_reader<V, TIT>::SparseArraySeed_reader(Rcpp::RObject) [with V = Rcpp::Vector<13>; TIT = const int*; Rcpp::RObject = Rcpp::RObject_Impl<Rcpp::PreserveStorage>]': C:/Users/biocbuild/bbs-3.14-bioc/R/library/beachmat/include/beachmat3/lin_matrix.h:561:56: required from 'beachmat::lin_SparseArraySeed<V, TIT>::lin_SparseArraySeed(Rcpp::RObject) [with V = Rcpp::Vector<13>; TIT = const int*; Rcpp::RObject = Rcpp::RObject_Impl<Rcpp::PreserveStorage>]' C:/Users/biocbuild/bbs-3.14-bioc/R/library/beachmat/include/beachmat3/read_lin_block.h:36:39: required from 'std::unique_ptr<_Codecvt> beachmat::read_lin_sparse_block_raw(Rcpp::RObject) [with M = beachmat::lin_matrix; Rcpp::RObject = Rcpp::RObject_Impl<Rcpp::PreserveStorage>]' C:/Users/biocbuild/bbs-3.14-bioc/R/library/beachmat/include/beachmat3/read_lin_block.h:65:63: required from here C:/Users/biocbuild/bbs-3.14-bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:535:17: warning: comparison of integer expressions of different signedness: 'const size_t' {aka 'const long long unsigned int'} and 'R_xlen_t' {aka 'long long int'} [-Wsign-compare] if (nnz != x.size()) { C:/Users/biocbuild/bbs-3.14-bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:551:45: warning: comparison of integer expressions of different signedness: 'int' and 'const size_t' {aka 'const long long unsigned int'} [-Wsign-compare] if (lastR <= 0 || lastR > NR || lastC <= 0 || lastC > NC) { ~~~~~~^~~~ C:/Users/biocbuild/bbs-3.14-bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:551:73: warning: comparison of integer expressions of different signedness: 'int' and 'const size_t' {aka 'const long long unsigned int'} [-Wsign-compare] if (lastR <= 0 || lastR > NR || lastC <= 0 || lastC > NC) { ~~~~~~^~~~ C:/Users/biocbuild/bbs-3.14-bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:593:35: warning: comparison of integer expressions of different signedness: 'int' and 'const size_t' {aka 'const long long unsigned int'} [-Wsign-compare] for (int v = 0; v < nnz; ++v, ++rowIt, ++colIt, ++xIt) { ~~^~~~~ C:/Users/biocbuild/bbs-3.14-bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h: In instantiation of 'beachmat::SparseArraySeed_reader<V, TIT>::SparseArraySeed_reader(Rcpp::RObject) [with V = Rcpp::Vector<14, Rcpp::PreserveStorage>; TIT = const double*; Rcpp::RObject = Rcpp::RObject_Impl<Rcpp::PreserveStorage>]': C:/Users/biocbuild/bbs-3.14-bioc/R/library/beachmat/include/beachmat3/lin_matrix.h:561:56: required from 'beachmat::lin_SparseArraySeed<V, TIT>::lin_SparseArraySeed(Rcpp::RObject) [with V = Rcpp::Vector<14, Rcpp::PreserveStorage>; TIT = const double*; Rcpp::RObject = Rcpp::RObject_Impl<Rcpp::PreserveStorage>]' C:/Users/biocbuild/bbs-3.14-bioc/R/library/beachmat/include/beachmat3/read_lin_block.h:38:39: required from 'std::unique_ptr<_Codecvt> beachmat::read_lin_sparse_block_raw(Rcpp::RObject) [with M = beachmat::lin_matrix; Rcpp::RObject = Rcpp::RObject_Impl<Rcpp::PreserveStorage>]' C:/Users/biocbuild/bbs-3.14-bioc/R/library/beachmat/include/beachmat3/read_lin_block.h:65:63: required from here C:/Users/biocbuild/bbs-3.14-bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:535:17: warning: comparison of integer expressions of different signedness: 'const size_t' {aka 'const long long unsigned int'} and 'R_xlen_t' {aka 'long long int'} [-Wsign-compare] if (nnz != x.size()) { C:/Users/biocbuild/bbs-3.14-bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:551:45: warning: comparison of integer expressions of different signedness: 'int' and 'const size_t' {aka 'const long long unsigned int'} [-Wsign-compare] if (lastR <= 0 || lastR > NR || lastC <= 0 || lastC > NC) { ~~~~~~^~~~ C:/Users/biocbuild/bbs-3.14-bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:551:73: warning: comparison of integer expressions of different signedness: 'int' and 'const size_t' {aka 'const long long unsigned int'} [-Wsign-compare] if (lastR <= 0 || lastR > NR || lastC <= 0 || lastC > NC) { ~~~~~~^~~~ C:/Users/biocbuild/bbs-3.14-bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:593:35: warning: comparison of integer expressions of different signedness: 'int' and 'const size_t' {aka 'const long long unsigned int'} [-Wsign-compare] for (int v = 0; v < nnz; ++v, ++rowIt, ++colIt, ++xIt) { ~~^~~~~ C:/Users/biocbuild/bbs-3.14-bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h: In instantiation of 'beachmat::SparseArraySeed_reader<V, TIT>::SparseArraySeed_reader(Rcpp::RObject) [with V = Rcpp::Vector<10, Rcpp::PreserveStorage>; TIT = const int*; Rcpp::RObject = Rcpp::RObject_Impl<Rcpp::PreserveStorage>]': C:/Users/biocbuild/bbs-3.14-bioc/R/library/beachmat/include/beachmat3/lin_matrix.h:561:56: required from 'beachmat::lin_SparseArraySeed<V, TIT>::lin_SparseArraySeed(Rcpp::RObject) [with V = Rcpp::Vector<10, Rcpp::PreserveStorage>; TIT = const int*; Rcpp::RObject = Rcpp::RObject_Impl<Rcpp::PreserveStorage>]' C:/Users/biocbuild/bbs-3.14-bioc/R/library/beachmat/include/beachmat3/read_lin_block.h:40:39: required from 'std::unique_ptr<_Codecvt> beachmat::read_lin_sparse_block_raw(Rcpp::RObject) [with M = beachmat::lin_matrix; Rcpp::RObject = Rcpp::RObject_Impl<Rcpp::PreserveStorage>]' C:/Users/biocbuild/bbs-3.14-bioc/R/library/beachmat/include/beachmat3/read_lin_block.h:65:63: required from here C:/Users/biocbuild/bbs-3.14-bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:535:17: warning: comparison of integer expressions of different signedness: 'const size_t' {aka 'const long long unsigned int'} and 'R_xlen_t' {aka 'long long int'} [-Wsign-compare] if (nnz != x.size()) { C:/Users/biocbuild/bbs-3.14-bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:551:45: warning: comparison of integer expressions of different signedness: 'int' and 'const size_t' {aka 'const long long unsigned int'} [-Wsign-compare] if (lastR <= 0 || lastR > NR || lastC <= 0 || lastC > NC) { ~~~~~~^~~~ C:/Users/biocbuild/bbs-3.14-bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:551:73: warning: comparison of integer expressions of different signedness: 'int' and 'const size_t' {aka 'const long long unsigned int'} [-Wsign-compare] if (lastR <= 0 || lastR > NR || lastC <= 0 || lastC > NC) { ~~~~~~^~~~ C:/Users/biocbuild/bbs-3.14-bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:593:35: warning: comparison of integer expressions of different signedness: 'int' and 'const size_t' {aka 'const long long unsigned int'} [-Wsign-compare] for (int v = 0; v < nnz; ++v, ++rowIt, ++colIt, ++xIt) { ~~^~~~~ C:/Users/biocbuild/bbs-3.14-bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h: In instantiation of 'beachmat::sparse_index<OUT, I> beachmat::Csparse_core<TIT, I, P>::get_row(size_t, ALT, I*, size_t, size_t) [with OUT = const int*; ALT = int*; TIT = const double*; I = int; P = long long unsigned int; size_t = long long unsigned int]': C:/Users/biocbuild/bbs-3.14-bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:650:73: required from 'beachmat::sparse_index<OUT, int> beachmat::SparseArraySeed_reader<V, TIT>::get_row(size_t, ALT, int*, size_t, size_t) [with OUT = const int*; ALT = int*; V = Rcpp::Vector<14, Rcpp::PreserveStorage>; TIT = const double*; size_t = long long unsigned int]' C:/Users/biocbuild/bbs-3.14-bioc/R/library/beachmat/include/beachmat3/lin_matrix.h:596:82: required from 'beachmat::sparse_index<const int*, int> beachmat::lin_SparseArraySeed<V, TIT>::get_row(size_t, int*, int*, size_t, size_t) [with V = Rcpp::Vector<14, Rcpp::PreserveStorage>; TIT = const double*; size_t = long long unsigned int]' C:/Users/biocbuild/bbs-3.14-bioc/R/library/beachmat/include/beachmat3/lin_matrix.h:595:35: required from here C:/Users/biocbuild/bbs-3.14-bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:250:22: warning: comparison of integer expressions of different signedness: 'const int' and 'const long long unsigned int' [-Wsign-compare] if (idex != *pIt && static_cast<size_t>(i[idex]) == r) { ~~~~~^~~~~~~ C:/Users/biocbuild/bbs-3.14-bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h: In instantiation of 'beachmat::sparse_index<OUT, I> beachmat::Csparse_core<TIT, I, P>::get_row(size_t, ALT, I*, size_t, size_t) [with OUT = const double*; ALT = double*; TIT = const double*; I = int; P = long long unsigned int; size_t = long long unsigned int]': C:/Users/biocbuild/bbs-3.14-bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:650:73: required from 'beachmat::sparse_index<OUT, int> beachmat::SparseArraySeed_reader<V, TIT>::get_row(size_t, ALT, int*, size_t, size_t) [with OUT = const double*; ALT = double*; V = Rcpp::Vector<14, Rcpp::PreserveStorage>; TIT = const double*; size_t = long long unsigned int]' C:/Users/biocbuild/bbs-3.14-bioc/R/library/beachmat/include/beachmat3/lin_matrix.h:602:85: required from 'beachmat::sparse_index<const double*, int> beachmat::lin_SparseArraySeed<V, TIT>::get_row(size_t, double*, int*, size_t, size_t) [with V = Rcpp::Vector<14, Rcpp::PreserveStorage>; TIT = const double*; size_t = long long unsigned int]' C:/Users/biocbuild/bbs-3.14-bioc/R/library/beachmat/include/beachmat3/lin_matrix.h:601:38: required from here C:/Users/biocbuild/bbs-3.14-bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:250:22: warning: comparison of integer expressions of different signedness: 'const int' and 'const long long unsigned int' [-Wsign-compare] C:/Users/biocbuild/bbs-3.14-bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h: In instantiation of 'beachmat::sparse_index<OUT, I> beachmat::Csparse_core<TIT, I, P>::get_row(size_t, ALT, I*, size_t, size_t) [with OUT = const int*; ALT = int*; TIT = const int*; I = int; P = long long unsigned int; size_t = long long unsigned int]': C:/Users/biocbuild/bbs-3.14-bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:650:73: required from 'beachmat::sparse_index<OUT, int> beachmat::SparseArraySeed_reader<V, TIT>::get_row(size_t, ALT, int*, size_t, size_t) [with OUT = const int*; ALT = int*; V = Rcpp::Vector<10, Rcpp::PreserveStorage>; TIT = const int*; size_t = long long unsigned int]' C:/Users/biocbuild/bbs-3.14-bioc/R/library/beachmat/include/beachmat3/lin_matrix.h:596:82: required from 'beachmat::sparse_index<const int*, int> beachmat::lin_SparseArraySeed<V, TIT>::get_row(size_t, int*, int*, size_t, size_t) [with V = Rcpp::Vector<10, Rcpp::PreserveStorage>; TIT = const int*; size_t = long long unsigned int]' C:/Users/biocbuild/bbs-3.14-bioc/R/library/beachmat/include/beachmat3/lin_matrix.h:595:35: required from here C:/Users/biocbuild/bbs-3.14-bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:250:22: warning: comparison of integer expressions of different signedness: 'const int' and 'const long long unsigned int' [-Wsign-compare] C:/Users/biocbuild/bbs-3.14-bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h: In instantiation of 'beachmat::sparse_index<OUT, I> beachmat::Csparse_core<TIT, I, P>::get_row(size_t, ALT, I*, size_t, size_t) [with OUT = const double*; ALT = double*; TIT = const int*; I = int; P = long long unsigned int; size_t = long long unsigned int]': C:/Users/biocbuild/bbs-3.14-bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:650:73: required from 'beachmat::sparse_index<OUT, int> beachmat::SparseArraySeed_reader<V, TIT>::get_row(size_t, ALT, int*, size_t, size_t) [with OUT = const double*; ALT = double*; V = Rcpp::Vector<10, Rcpp::PreserveStorage>; TIT = const int*; size_t = long long unsigned int]' C:/Users/biocbuild/bbs-3.14-bioc/R/library/beachmat/include/beachmat3/lin_matrix.h:602:85: required from 'beachmat::sparse_index<const double*, int> beachmat::lin_SparseArraySeed<V, TIT>::get_row(size_t, double*, int*, size_t, size_t) [with V = Rcpp::Vector<10, Rcpp::PreserveStorage>; TIT = const int*; size_t = long long unsigned int]' C:/Users/biocbuild/bbs-3.14-bioc/R/library/beachmat/include/beachmat3/lin_matrix.h:601:38: required from here C:/Users/biocbuild/bbs-3.14-bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:250:22: warning: comparison of integer expressions of different signedness: 'const int' and 'const long long unsigned int' [-Wsign-compare] "C:/rtools40/mingw64/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I../inst/include/ -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/Rcpp/include' -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/beachmat/include' -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c utils.cpp -o utils.o C:/rtools40/mingw64/bin/g++ -shared -s -static-libgcc -o scuttle.dll tmp.def RcppExports.o cumulative_prop.o downsample_counts.o fit_linear_model.o pool_size_factors.o sum_counts.o utils.o -LC:/Users/BIOCBU~1/BBS-3~1.14-/R/bin/x64 -lRlapack -LC:/Users/BIOCBU~1/BBS-3~1.14-/R/bin/x64 -lRblas -lgfortran -lm -lquadmath -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.14-/R/bin/x64 -lR installing to C:/Users/biocbuild/bbs-3.14-bioc/meat/scuttle.buildbin-libdir/scuttle/libs/x64 ** testing if installed package can be loaded * MD5 sums packaged installation of 'scuttle' as scuttle_1.4.0.zip * DONE (scuttle) * installing to library 'C:/Users/biocbuild/bbs-3.14-bioc/R/library' package 'scuttle' successfully unpacked and MD5 sums checked
scuttle.Rcheck/tests_i386/testthat.Rout R version 4.1.3 (2022-03-10) -- "One Push-Up" Copyright (C) 2022 The R Foundation for Statistical Computing Platform: i386-w64-mingw32/i386 (32-bit) R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under certain conditions. Type 'license()' or 'licence()' for distribution details. R is a collaborative project with many contributors. Type 'contributors()' for more information and 'citation()' on how to cite R or R packages in publications. Type 'demo()' for some demos, 'help()' for on-line help, or 'help.start()' for an HTML browser interface to help. Type 'q()' to quit R. > library(testthat) > library(scuttle) Loading required package: SingleCellExperiment Loading required package: SummarizedExperiment Loading required package: MatrixGenerics Loading required package: matrixStats Attaching package: 'MatrixGenerics' The following objects are masked from 'package:matrixStats': colAlls, colAnyNAs, colAnys, colAvgsPerRowSet, colCollapse, colCounts, colCummaxs, colCummins, colCumprods, colCumsums, colDiffs, colIQRDiffs, colIQRs, colLogSumExps, colMadDiffs, colMads, colMaxs, colMeans2, colMedians, colMins, colOrderStats, colProds, colQuantiles, colRanges, colRanks, colSdDiffs, colSds, colSums2, colTabulates, colVarDiffs, colVars, colWeightedMads, colWeightedMeans, colWeightedMedians, colWeightedSds, colWeightedVars, rowAlls, rowAnyNAs, rowAnys, rowAvgsPerColSet, rowCollapse, rowCounts, rowCummaxs, rowCummins, rowCumprods, rowCumsums, rowDiffs, rowIQRDiffs, rowIQRs, rowLogSumExps, rowMadDiffs, rowMads, rowMaxs, rowMeans2, rowMedians, rowMins, rowOrderStats, rowProds, rowQuantiles, rowRanges, rowRanks, rowSdDiffs, rowSds, rowSums2, rowTabulates, rowVarDiffs, rowVars, rowWeightedMads, rowWeightedMeans, rowWeightedMedians, rowWeightedSds, rowWeightedVars Loading required package: GenomicRanges Loading required package: stats4 Loading required package: BiocGenerics Attaching package: 'BiocGenerics' The following objects are masked from 'package:stats': IQR, mad, sd, var, xtabs The following objects are masked from 'package:base': Filter, Find, Map, Position, Reduce, anyDuplicated, append, as.data.frame, basename, cbind, colnames, dirname, do.call, duplicated, eval, evalq, get, grep, grepl, intersect, is.unsorted, lapply, mapply, match, mget, order, paste, pmax, pmax.int, pmin, pmin.int, rank, rbind, rownames, sapply, setdiff, sort, table, tapply, union, unique, unsplit, which.max, which.min Loading required package: S4Vectors Attaching package: 'S4Vectors' The following objects are masked from 'package:base': I, expand.grid, unname Loading required package: IRanges Attaching package: 'IRanges' The following object is masked from 'package:grDevices': windows Loading required package: GenomeInfoDb Loading required package: Biobase Welcome to Bioconductor Vignettes contain introductory material; view with 'browseVignettes()'. To cite Bioconductor, see 'citation("Biobase")', and for packages 'citation("pkgname")'. Attaching package: 'Biobase' The following object is masked from 'package:MatrixGenerics': rowMedians The following objects are masked from 'package:matrixStats': anyMissing, rowMedians > test_check("scuttle") Loading required package: Matrix Attaching package: 'Matrix' The following object is masked from 'package:S4Vectors': expand Attaching package: 'DelayedArray' The following objects are masked from 'package:base': aperm, apply, rowsum, scale, sweep [ FAIL 0 | WARN 0 | SKIP 0 | PASS 1681 ] > > proc.time() user system elapsed 143.01 5.65 345.03 |
scuttle.Rcheck/tests_x64/testthat.Rout R version 4.1.3 (2022-03-10) -- "One Push-Up" Copyright (C) 2022 The R Foundation for Statistical Computing Platform: x86_64-w64-mingw32/x64 (64-bit) R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under certain conditions. Type 'license()' or 'licence()' for distribution details. R is a collaborative project with many contributors. Type 'contributors()' for more information and 'citation()' on how to cite R or R packages in publications. Type 'demo()' for some demos, 'help()' for on-line help, or 'help.start()' for an HTML browser interface to help. Type 'q()' to quit R. > library(testthat) > library(scuttle) Loading required package: SingleCellExperiment Loading required package: SummarizedExperiment Loading required package: MatrixGenerics Loading required package: matrixStats Attaching package: 'MatrixGenerics' The following objects are masked from 'package:matrixStats': colAlls, colAnyNAs, colAnys, colAvgsPerRowSet, colCollapse, colCounts, colCummaxs, colCummins, colCumprods, colCumsums, colDiffs, colIQRDiffs, colIQRs, colLogSumExps, colMadDiffs, colMads, colMaxs, colMeans2, colMedians, colMins, colOrderStats, colProds, colQuantiles, colRanges, colRanks, colSdDiffs, colSds, colSums2, colTabulates, colVarDiffs, colVars, colWeightedMads, colWeightedMeans, colWeightedMedians, colWeightedSds, colWeightedVars, rowAlls, rowAnyNAs, rowAnys, rowAvgsPerColSet, rowCollapse, rowCounts, rowCummaxs, rowCummins, rowCumprods, rowCumsums, rowDiffs, rowIQRDiffs, rowIQRs, rowLogSumExps, rowMadDiffs, rowMads, rowMaxs, rowMeans2, rowMedians, rowMins, rowOrderStats, rowProds, rowQuantiles, rowRanges, rowRanks, rowSdDiffs, rowSds, rowSums2, rowTabulates, rowVarDiffs, rowVars, rowWeightedMads, rowWeightedMeans, rowWeightedMedians, rowWeightedSds, rowWeightedVars Loading required package: GenomicRanges Loading required package: stats4 Loading required package: BiocGenerics Attaching package: 'BiocGenerics' The following objects are masked from 'package:stats': IQR, mad, sd, var, xtabs The following objects are masked from 'package:base': Filter, Find, Map, Position, Reduce, anyDuplicated, append, as.data.frame, basename, cbind, colnames, dirname, do.call, duplicated, eval, evalq, get, grep, grepl, intersect, is.unsorted, lapply, mapply, match, mget, order, paste, pmax, pmax.int, pmin, pmin.int, rank, rbind, rownames, sapply, setdiff, sort, table, tapply, union, unique, unsplit, which.max, which.min Loading required package: S4Vectors Attaching package: 'S4Vectors' The following objects are masked from 'package:base': I, expand.grid, unname Loading required package: IRanges Attaching package: 'IRanges' The following object is masked from 'package:grDevices': windows Loading required package: GenomeInfoDb Loading required package: Biobase Welcome to Bioconductor Vignettes contain introductory material; view with 'browseVignettes()'. To cite Bioconductor, see 'citation("Biobase")', and for packages 'citation("pkgname")'. Attaching package: 'Biobase' The following object is masked from 'package:MatrixGenerics': rowMedians The following objects are masked from 'package:matrixStats': anyMissing, rowMedians > test_check("scuttle") Loading required package: Matrix Attaching package: 'Matrix' The following object is masked from 'package:S4Vectors': expand Attaching package: 'DelayedArray' The following objects are masked from 'package:base': aperm, apply, rowsum, scale, sweep [ FAIL 0 | WARN 0 | SKIP 0 | PASS 1681 ] > > proc.time() user system elapsed 133.56 3.60 407.48 |
scuttle.Rcheck/examples_i386/scuttle-Ex.timings
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scuttle.Rcheck/examples_x64/scuttle-Ex.timings
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