| Back to Multiple platform build/check report for BioC 3.14 |
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This page was generated on 2022-04-13 12:07:04 -0400 (Wed, 13 Apr 2022).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 20.04.4 LTS) | x86_64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4324 |
| tokay2 | Windows Server 2012 R2 Standard | x64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4077 |
| machv2 | macOS 10.14.6 Mojave | x86_64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4137 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
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To the developers/maintainers of the pcaMethods package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/pcaMethods.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 1384/2083 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| pcaMethods 1.86.0 (landing page) Henning Redestig
| nebbiolo2 | Linux (Ubuntu 20.04.4 LTS) / x86_64 | OK | OK | OK |  | ||||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | | ||||||||
| machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | | ||||||||
| Package: pcaMethods |
| Version: 1.86.0 |
| Command: C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/pcaMethods_1.86.0.tar.gz && rm -rf pcaMethods.buildbin-libdir && mkdir pcaMethods.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=pcaMethods.buildbin-libdir pcaMethods_1.86.0.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL pcaMethods_1.86.0.zip && rm pcaMethods_1.86.0.tar.gz pcaMethods_1.86.0.zip |
| StartedAt: 2022-04-12 04:33:13 -0400 (Tue, 12 Apr 2022) |
| EndedAt: 2022-04-12 04:35:57 -0400 (Tue, 12 Apr 2022) |
| EllapsedTime: 163.7 seconds |
| RetCode: 0 |
| Status: OK |
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### Running command:
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### C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/pcaMethods_1.86.0.tar.gz && rm -rf pcaMethods.buildbin-libdir && mkdir pcaMethods.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=pcaMethods.buildbin-libdir pcaMethods_1.86.0.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL pcaMethods_1.86.0.zip && rm pcaMethods_1.86.0.tar.gz pcaMethods_1.86.0.zip
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install for i386
* installing *source* package 'pcaMethods' ...
** using staged installation
** libs
"C:/rtools40/mingw32/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/Rcpp/include' -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c RcppExports.cpp -o RcppExports.o
"C:/rtools40/mingw32/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/Rcpp/include' -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c nipals.cpp -o nipals.o
C:/rtools40/mingw32/bin/g++ -std=gnu++11 -shared -s -static-libgcc -o pcaMethods.dll tmp.def RcppExports.o nipals.o -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.14-/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.14-bioc/meat/pcaMethods.buildbin-libdir/00LOCK-pcaMethods/00new/pcaMethods/libs/i386
** R
** data
** inst
** byte-compile and prepare package for lazy loading
Creating a new generic function for 'loadings' in package 'pcaMethods'
** help
*** installing help indices
converting help for package 'pcaMethods'
finding HTML links ... done
BPCA_dostep html
BPCA_initmodel html
DModX-pcaRes-method html
Q2 html
R2VX-pcaRes-method html
R2cum-pcaRes-method html
RnipalsPca html
asExprSet html
biplot-methods html
bpca html
center-pcaRes-method html
centered-pcaRes-method html
checkData html
completeObs-nniRes-method html
cvseg html
cvstat-pcaRes-method html
deletediagonals html
derrorHierarchic html
dim.pcaRes html
errorHierarchic html
fitted-methods html
forkNlpcaNet html
getHierarchicIdx html
helix html
kEstimate html
kEstimateFast html
leverage-pcaRes-method html
lineSearch html
linr html
listPcaMethods html
llsImpute html
loadings-ANY-method html
loadings-pcaRes-method html
loadings.pcaRes html
metaboliteData html
metaboliteDataComplete html
method-pcaRes-method html
nObs-pcaRes-method html
nP-pcaRes-method html
nPcs-pcaRes-method html
nVar-pcaRes-method html
nipalsPca html
nlpca html
nmissing-pcaRes-method html
nni html
nniRes html
optiAlgCgd html
orth html
pca html
pcaMethods-deprecated html
pcaMethods html
pcaNet html
pcaRes html
plot.pcaRes html
plotPcs html
ppca html
predict-methods html
prep html
rediduals-methods html
repmat html
robustPca html
robustSvd html
sDev-pcaRes-method html
scaled-pcaRes-method html
scl-pcaRes-method html
scores-pcaRes-method html
scores.pcaRes html
show-methods html
showNniRes html
simpleEllipse html
slplot-pcaRes-method html
sortFeatures html
summary html
svdImpute html
svdPca html
tempFixNas html
vector2matrices-matrix-method html
vector2matrices-nlpcaNet-method html
wasna-pcaRes-method html
weightsAccount html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'pcaMethods' ...
** libs
"C:/rtools40/mingw64/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/Rcpp/include' -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c RcppExports.cpp -o RcppExports.o
"C:/rtools40/mingw64/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/Rcpp/include' -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c nipals.cpp -o nipals.o
C:/rtools40/mingw64/bin/g++ -std=gnu++11 -shared -s -static-libgcc -o pcaMethods.dll tmp.def RcppExports.o nipals.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.14-/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.14-bioc/meat/pcaMethods.buildbin-libdir/pcaMethods/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'pcaMethods' as pcaMethods_1.86.0.zip
* DONE (pcaMethods)
* installing to library 'C:/Users/biocbuild/bbs-3.14-bioc/R/library'
package 'pcaMethods' successfully unpacked and MD5 sums checked