| Back to Multiple platform build/check report for BioC 3.14 |
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This page was generated on 2022-01-05 13:08:00 -0500 (Wed, 05 Jan 2022).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 20.04.4 LTS) | x86_64 | 4.1.2 (2021-11-01) -- "Bird Hippie" | 4327 |
| tokay2 | Windows Server 2012 R2 Standard | x64 | 4.1.2 (2021-11-01) -- "Bird Hippie" | 4076 |
| machv2 | macOS 10.14.6 Mojave | x86_64 | 4.1.2 (2021-11-01) -- "Bird Hippie" | 4137 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
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To the developers/maintainers of the gCrisprTools package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/gCrisprTools.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 704/2083 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| gCrisprTools 2.0.0 (landing page) Russell Bainer
| nebbiolo2 | Linux (Ubuntu 20.04.4 LTS) / x86_64 | OK | OK | OK |  | ||||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | | ||||||||
| machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | | ||||||||
| Package: gCrisprTools |
| Version: 2.0.0 |
| Command: C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:gCrisprTools.install-out.txt --library=C:\Users\biocbuild\bbs-3.14-bioc\R\library --no-vignettes --timings gCrisprTools_2.0.0.tar.gz |
| StartedAt: 2022-01-04 20:02:37 -0500 (Tue, 04 Jan 2022) |
| EndedAt: 2022-01-04 20:13:13 -0500 (Tue, 04 Jan 2022) |
| EllapsedTime: 635.9 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: gCrisprTools.Rcheck |
| Warnings: 0 |
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### Running command:
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### C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:gCrisprTools.install-out.txt --library=C:\Users\biocbuild\bbs-3.14-bioc\R\library --no-vignettes --timings gCrisprTools_2.0.0.tar.gz
###
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* using log directory 'C:/Users/biocbuild/bbs-3.14-bioc/meat/gCrisprTools.Rcheck'
* using R version 4.1.2 (2021-11-01)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'gCrisprTools/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'gCrisprTools' version '2.0.0'
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'gCrisprTools' can be installed ... OK
* checking installed package size ... NOTE
installed size is 9.0Mb
sub-directories of 1Mb or more:
data 2.6Mb
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
ct.seas: no visible global function definition for 'ct.compileSparrow'
Undefined global functions or variables:
ct.compileSparrow
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
Examples with CPU (user + system) or elapsed time > 5s
user system elapsed
ct.makeReport 14.14 31.25 46.06
ct.GREATdb 26.68 2.64 29.19
ct.makeContrastReport 6.77 6.05 13.50
ct.compareContrasts 9.77 1.08 10.84
ct.upSet 9.61 0.06 9.67
ct.guideCDF 9.35 0.03 9.39
ct.GCbias 8.51 0.23 9.01
ct.seas 7.22 0.41 19.36
ct.makeQCReport 4.22 3.06 8.11
ct.contrastBarchart 6.59 0.00 6.60
** running examples for arch 'x64' ... OK
Examples with CPU (user + system) or elapsed time > 5s
user system elapsed
ct.makeReport 13.50 27.06 41.26
ct.GREATdb 28.87 1.86 30.59
ct.makeContrastReport 7.01 6.25 14.00
ct.compareContrasts 10.14 0.19 10.33
ct.seas 8.28 0.28 20.50
ct.guideCDF 8.45 0.06 8.52
ct.upSet 8.38 0.01 8.39
ct.contrastBarchart 7.98 0.00 7.98
ct.makeQCReport 4.19 3.20 7.96
ct.GCbias 6.75 0.17 6.92
* checking for unstated dependencies in 'tests' ... OK
* checking tests ...
** running tests for arch 'i386' ...
Running 'unit.tests.R'
OK
** running tests for arch 'x64' ...
Running 'unit.tests.R'
OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: 2 NOTEs
See
'C:/Users/biocbuild/bbs-3.14-bioc/meat/gCrisprTools.Rcheck/00check.log'
for details.
gCrisprTools.Rcheck/00install.out
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###
### Running command:
###
### C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/gCrisprTools_2.0.0.tar.gz && rm -rf gCrisprTools.buildbin-libdir && mkdir gCrisprTools.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=gCrisprTools.buildbin-libdir gCrisprTools_2.0.0.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL gCrisprTools_2.0.0.zip && rm gCrisprTools_2.0.0.tar.gz gCrisprTools_2.0.0.zip
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% Total % Received % Xferd Average Speed Time Time Time Current
Dload Upload Total Spent Left Speed
0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0
0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0
47 8196k 47 3912k 0 0 3819k 0 0:00:02 0:00:01 0:00:01 3817k
100 8196k 100 8196k 0 0 4720k 0 0:00:01 0:00:01 --:--:-- 4718k
install for i386
* installing *source* package 'gCrisprTools' ...
** using staged installation
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'gCrisprTools'
finding HTML links ... done
aln html
ann html
appendDateAndExt html
ct.CAT html
ct.DirectionalTests html
ct.GCbias html
ct.GREATdb html
ct.PRC html
ct.ROC html
ct.RRAaPvals html
ct.RRAalpha html
ct.RRAalphaBatch html
ct.alignmentChart html
ct.alphaBeta html
ct.applyAlpha html
ct.buildSE html
ct.compareContrasts html
ct.contrastBarchart html
ct.drawColorLegend html
ct.drawFlat html
ct.ecdf html
ct.expandAnnotation html
ct.exprsColor html
ct.filterReads html
ct.gRNARankByReplicate html
ct.generateResults html
ct.guideCDF html
ct.inputCheck html
ct.keyCheck html
ct.makeContrastReport html
ct.makeQCReport html
ct.makeReport html
ct.makeRhoNull html
ct.normalizeBySlope html
ct.normalizeFQ html
ct.normalizeGuides html
ct.normalizeMedians html
ct.normalizeNTC html
ct.normalizeSpline html
ct.numcores html
ct.parseGeneSymbol html
ct.prepareAnnotation html
ct.preprocessFit html
ct.rankSimple html
ct.rawCountDensities html
ct.regularizeContrasts html
ct.resultCheck html
ct.scatter html
ct.seas html
ct.seasPrep html
ct.signalSummary html
ct.simpleResult html
ct.softLog html
ct.stackGuides html
ct.targetSetEnrichment html
ct.topTargets html
ct.upSet html
ct.viewControls html
ct.viewGuides html
dir.writable html
es html
essential.genes html
fit html
gCrisprTools-package html
initOutDir html
renderReport html
resultsDF html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'gCrisprTools' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'gCrisprTools' as gCrisprTools_2.0.0.zip
* DONE (gCrisprTools)
* installing to library 'C:/Users/biocbuild/bbs-3.14-bioc/R/library'
package 'gCrisprTools' successfully unpacked and MD5 sums checked
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gCrisprTools.Rcheck/tests_i386/unit.tests.Rout
R version 4.1.2 (2021-11-01) -- "Bird Hippie"
Copyright (C) 2021 The R Foundation for Statistical Computing
Platform: i386-w64-mingw32/i386 (32-bit)
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> #require("BiocGenerics", quietly = TRUE)
> BiocGenerics:::testPackage("gCrisprTools")
RUNIT TEST PROTOCOL -- Tue Jan 04 20:12:55 2022
***********************************************
Number of test functions: 0
Number of errors: 0
Number of failures: 0
1 Test Suite :
gCrisprTools RUnit Tests - 0 test functions, 0 errors, 0 failures
Number of test functions: 0
Number of errors: 0
Number of failures: 0
>
> proc.time()
user system elapsed
6.40 0.64 7.04
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gCrisprTools.Rcheck/tests_x64/unit.tests.Rout
R version 4.1.2 (2021-11-01) -- "Bird Hippie"
Copyright (C) 2021 The R Foundation for Statistical Computing
Platform: x86_64-w64-mingw32/x64 (64-bit)
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> #require("BiocGenerics", quietly = TRUE)
> BiocGenerics:::testPackage("gCrisprTools")
RUNIT TEST PROTOCOL -- Tue Jan 04 20:13:03 2022
***********************************************
Number of test functions: 0
Number of errors: 0
Number of failures: 0
1 Test Suite :
gCrisprTools RUnit Tests - 0 test functions, 0 errors, 0 failures
Number of test functions: 0
Number of errors: 0
Number of failures: 0
>
> proc.time()
user system elapsed
7.68 0.32 8.00
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gCrisprTools.Rcheck/examples_i386/gCrisprTools-Ex.timings
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gCrisprTools.Rcheck/examples_x64/gCrisprTools-Ex.timings
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