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###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/fmrs_1.4.0.tar.gz && rm -rf fmrs.buildbin-libdir && mkdir fmrs.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=fmrs.buildbin-libdir fmrs_1.4.0.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL fmrs_1.4.0.zip && rm fmrs_1.4.0.tar.gz fmrs_1.4.0.zip
###
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install for i386

* installing *source* package 'fmrs' ...
** using staged installation
** libs
"C:/rtools40/mingw32/bin/"gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign  -c fmrs.c -o fmrs.o
fmrs.c: In function 'minimum':
fmrs.c:138:3: warning: this 'for' clause does not guard... [-Wmisleading-indentation]
   for(i = 0; i < ncov1; i++)
   ^~~
fmrs.c:142:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for'
     return(min1);
     ^~~~~~
fmrs.c: In function 'maximum':
fmrs.c:152:3: warning: this 'for' clause does not guard... [-Wmisleading-indentation]
   for(i = 0; i < ncov1; i++)
   ^~~
fmrs.c:156:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for'
     return(max1);
     ^~~~~~
fmrs.c: In function 'FMR_Norm_Surv_EM_MLE':
fmrs.c:457:11: warning: this 'for' clause does not guard... [-Wmisleading-indentation]
           for(j = 0; j < (ONCOV[k1] + 1); j++)
           ^~~
fmrs.c:463:13: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for'
             for (i = 0; i < (ONCOV[k1] + 1); i++) {
             ^~~
fmrs.c:285:12: warning: variable 'multX' set but not used [-Wunused-but-set-variable]
     double multX[nsize][NCOV][NCOMP];
            ^~~~~
fmrs.c: In function 'FMR_Norm_Surv_EM_VarSel':
fmrs.c:883:9: warning: this 'for' clause does not guard... [-Wmisleading-indentation]
         for(j = 0; j < NCOV; j++)
         ^~~
fmrs.c:887:11: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for'
           for(i = 0; i < ONCOV[k1]; i++){
           ^~~
fmrs.c:915:13: warning: this 'for' clause does not guard... [-Wmisleading-indentation]
             for(j = 0; j < (ONCOV[k1] + 1); j++)
             ^~~
fmrs.c:921:15: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for'
               for (i = 0; i < (ONCOV[k1] + 1); i++) {
               ^~~
fmrs.c:687:12: warning: variable 'multX' set but not used [-Wunused-but-set-variable]
     double multX[nsize][NCOV][NCOMP];
            ^~~~~
fmrs.c: In function 'FMR_Norm_Surv_CwTuneParSel':
fmrs.c:1403:11: warning: this 'for' clause does not guard... [-Wmisleading-indentation]
           for(j = 0; j < (ONCOV[k1] + 1); j++)
           ^~~
fmrs.c:1409:13: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for'
             for (i = 0; i < (ONCOV[k1] + 1); i++) {
             ^~~
fmrs.c:1218:12: warning: variable 'new_pi0' set but not used [-Wunused-but-set-variable]
     double new_pi0[NCOMP];
            ^~~~~~~
fmrs.c:1211:12: warning: variable 'new_sigma0' set but not used [-Wunused-but-set-variable]
     double new_sigma0[NCOMP];
            ^~~~~~~~~~
fmrs.c:1196:12: warning: variable 'multX' set but not used [-Wunused-but-set-variable]
     double multX[nsize][NCOV][NCOMP];
            ^~~~~
fmrs.c: In function 'FMR_Weibl_Surv_EM_MLE':
fmrs.c:1752:13: warning: this 'for' clause does not guard... [-Wmisleading-indentation]
             for(j = 0; j < (ONCOV[k1] + 1); j++)
             ^~~
fmrs.c:1758:15: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for'
               for (i = 0; i < (ONCOV[k1] + 1); i++) {
               ^~~
fmrs.c:1547:12: warning: variable 'multX' set but not used [-Wunused-but-set-variable]
     double multX[nsize][NCOV][NCOMP];
            ^~~~~
fmrs.c: In function 'FMR_Weibl_Surv_EM_VarSel':
fmrs.c:2205:11: warning: this 'for' clause does not guard... [-Wmisleading-indentation]
           for(j = 0; j < (NCOV + 1); j++)
           ^~~
fmrs.c:2212:13: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for'
             for(i = 0; i < (NCOV + 1); i++){
             ^~~
fmrs.c:2251:15: warning: this 'for' clause does not guard... [-Wmisleading-indentation]
               for(j = 0; j < (NCOV + 2); j++)
               ^~~
fmrs.c:2257:17: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for'
                 for (i = 0; i < (NCOV + 2); i++) {
                 ^~~
fmrs.c:2271:19: warning: this 'for' clause does not guard... [-Wmisleading-indentation]
                   for(j = 0; j < (NCOV + 1); j++)
                   ^~~
fmrs.c:2277:21: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for'
                     sumi5[k1] = 0.0;
                     ^~~~~
fmrs.c: In function 'FMR_Weibl_Surv_CwTuneParSel':
fmrs.c:2745:11: warning: this 'for' clause does not guard... [-Wmisleading-indentation]
           for(j = 0; j < NCOV; j++)
           ^~~
fmrs.c:2750:13: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for'
             for(i = 0; i < ONCOV[k1]; i++){
             ^~~
fmrs.c:2553:12: warning: variable 'multX' set but not used [-Wunused-but-set-variable]
     double multX[nsize][NCOV][k1];
            ^~~~~
fmrs.c: In function 'FMR_Norm_Surv_EM_VarSel':
fmrs.c:748:12: warning: 'sat_den' may be used uninitialized in this function [-Wmaybe-uninitialized]
     double sat_den;
            ^~~~~~~
fmrs.c: In function 'FMR_Weibl_Surv_EM_VarSel':
fmrs.c:2072:12: warning: 'sat_den' may be used uninitialized in this function [-Wmaybe-uninitialized]
     double sat_den;
            ^~~~~~~
"C:/rtools40/mingw32/bin/"gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign  -c fmrs_init.c -o fmrs_init.o
C:/rtools40/mingw32/bin/gcc -shared -s -static-libgcc -o fmrs.dll tmp.def fmrs.o fmrs_init.o -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.14-/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.14-bioc/meat/fmrs.buildbin-libdir/00LOCK-fmrs/00new/fmrs/libs/i386
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'fmrs'
    finding HTML links ... done
    BIC-methods                             html  
    coefficients-methods                    html  
    dispersion-methods                      html  
    fitted-methods                          html  
    fmrs-package                            html  
    fmrs.gendata-methods                    html  
    fmrs.mle-methods                        html  
    fmrs.tunsel-methods                     html  
    fmrs.varsel-methods                     html  
    fmrsfit-class                           html  
    fmrstunpar-class                        html  
    logLik-methods                          html  
    mixProp-methods                         html  
    ncomp-methods                           html  
    ncov-methods                            html  
    nobs-methods                            html  
    residuals-methods                       html  
    summary-methods                         html  
    weights-methods                         html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'fmrs' ...
** libs
"C:/rtools40/mingw64/bin/"gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign  -c fmrs.c -o fmrs.o
fmrs.c: In function 'minimum':
fmrs.c:138:3: warning: this 'for' clause does not guard... [-Wmisleading-indentation]
   for(i = 0; i < ncov1; i++)
   ^~~
fmrs.c:142:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for'
     return(min1);
     ^~~~~~
fmrs.c: In function 'maximum':
fmrs.c:152:3: warning: this 'for' clause does not guard... [-Wmisleading-indentation]
   for(i = 0; i < ncov1; i++)
   ^~~
fmrs.c:156:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for'
     return(max1);
     ^~~~~~
fmrs.c: In function 'FMR_Norm_Surv_EM_MLE':
fmrs.c:457:11: warning: this 'for' clause does not guard... [-Wmisleading-indentation]
           for(j = 0; j < (ONCOV[k1] + 1); j++)
           ^~~
fmrs.c:463:13: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for'
             for (i = 0; i < (ONCOV[k1] + 1); i++) {
             ^~~
fmrs.c:285:12: warning: variable 'multX' set but not used [-Wunused-but-set-variable]
     double multX[nsize][NCOV][NCOMP];
            ^~~~~
fmrs.c: In function 'FMR_Norm_Surv_EM_VarSel':
fmrs.c:883:9: warning: this 'for' clause does not guard... [-Wmisleading-indentation]
         for(j = 0; j < NCOV; j++)
         ^~~
fmrs.c:887:11: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for'
           for(i = 0; i < ONCOV[k1]; i++){
           ^~~
fmrs.c:915:13: warning: this 'for' clause does not guard... [-Wmisleading-indentation]
             for(j = 0; j < (ONCOV[k1] + 1); j++)
             ^~~
fmrs.c:921:15: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for'
               for (i = 0; i < (ONCOV[k1] + 1); i++) {
               ^~~
fmrs.c:687:12: warning: variable 'multX' set but not used [-Wunused-but-set-variable]
     double multX[nsize][NCOV][NCOMP];
            ^~~~~
fmrs.c: In function 'FMR_Norm_Surv_CwTuneParSel':
fmrs.c:1403:11: warning: this 'for' clause does not guard... [-Wmisleading-indentation]
           for(j = 0; j < (ONCOV[k1] + 1); j++)
           ^~~
fmrs.c:1409:13: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for'
             for (i = 0; i < (ONCOV[k1] + 1); i++) {
             ^~~
fmrs.c:1218:12: warning: variable 'new_pi0' set but not used [-Wunused-but-set-variable]
     double new_pi0[NCOMP];
            ^~~~~~~
fmrs.c:1211:12: warning: variable 'new_sigma0' set but not used [-Wunused-but-set-variable]
     double new_sigma0[NCOMP];
            ^~~~~~~~~~
fmrs.c:1196:12: warning: variable 'multX' set but not used [-Wunused-but-set-variable]
     double multX[nsize][NCOV][NCOMP];
            ^~~~~
fmrs.c: In function 'FMR_Weibl_Surv_EM_MLE':
fmrs.c:1752:13: warning: this 'for' clause does not guard... [-Wmisleading-indentation]
             for(j = 0; j < (ONCOV[k1] + 1); j++)
             ^~~
fmrs.c:1758:15: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for'
               for (i = 0; i < (ONCOV[k1] + 1); i++) {
               ^~~
fmrs.c:1547:12: warning: variable 'multX' set but not used [-Wunused-but-set-variable]
     double multX[nsize][NCOV][NCOMP];
            ^~~~~
fmrs.c: In function 'FMR_Weibl_Surv_EM_VarSel':
fmrs.c:2205:11: warning: this 'for' clause does not guard... [-Wmisleading-indentation]
           for(j = 0; j < (NCOV + 1); j++)
           ^~~
fmrs.c:2212:13: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for'
             for(i = 0; i < (NCOV + 1); i++){
             ^~~
fmrs.c:2251:15: warning: this 'for' clause does not guard... [-Wmisleading-indentation]
               for(j = 0; j < (NCOV + 2); j++)
               ^~~
fmrs.c:2257:17: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for'
                 for (i = 0; i < (NCOV + 2); i++) {
                 ^~~
fmrs.c:2271:19: warning: this 'for' clause does not guard... [-Wmisleading-indentation]
                   for(j = 0; j < (NCOV + 1); j++)
                   ^~~
fmrs.c:2277:21: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for'
                     sumi5[k1] = 0.0;
                     ^~~~~
fmrs.c: In function 'FMR_Weibl_Surv_CwTuneParSel':
fmrs.c:2745:11: warning: this 'for' clause does not guard... [-Wmisleading-indentation]
           for(j = 0; j < NCOV; j++)
           ^~~
fmrs.c:2750:13: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for'
             for(i = 0; i < ONCOV[k1]; i++){
             ^~~
fmrs.c:2553:12: warning: variable 'multX' set but not used [-Wunused-but-set-variable]
     double multX[nsize][NCOV][k1];
            ^~~~~
fmrs.c: In function 'FMR_Norm_Surv_EM_VarSel':
fmrs.c:748:12: warning: 'sat_den' may be used uninitialized in this function [-Wmaybe-uninitialized]
     double sat_den;
            ^~~~~~~
fmrs.c: In function 'FMR_Weibl_Surv_EM_VarSel':
fmrs.c:2072:12: warning: 'sat_den' may be used uninitialized in this function [-Wmaybe-uninitialized]
     double sat_den;
            ^~~~~~~
"C:/rtools40/mingw64/bin/"gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign  -c fmrs_init.c -o fmrs_init.o
C:/rtools40/mingw64/bin/gcc -shared -s -static-libgcc -o fmrs.dll tmp.def fmrs.o fmrs_init.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.14-/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.14-bioc/meat/fmrs.buildbin-libdir/fmrs/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'fmrs' as fmrs_1.4.0.zip
* DONE (fmrs)
* installing to library 'C:/Users/biocbuild/bbs-3.14-bioc/R/library'
package 'fmrs' successfully unpacked and MD5 sums checked