Back to Multiple platform build/check report for BioC 3.14 |
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This page was generated on 2022-04-13 12:08:55 -0400 (Wed, 13 Apr 2022).
Hostname | OS | Arch (*) | R version | Installed pkgs |
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nebbiolo2 | Linux (Ubuntu 20.04.4 LTS) | x86_64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4324 |
tokay2 | Windows Server 2012 R2 Standard | x64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4077 |
machv2 | macOS 10.14.6 Mojave | x86_64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4137 |
Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X |
To the developers/maintainers of the TimeSeriesExperiment package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/TimeSeriesExperiment.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
Package 1959/2083 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
TimeSeriesExperiment 1.12.0 (landing page) Lan Huong Nguyen
| nebbiolo2 | Linux (Ubuntu 20.04.4 LTS) / x86_64 | OK | OK | OK | |||||||||
tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | |||||||||
machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | |||||||||
Package: TimeSeriesExperiment |
Version: 1.12.0 |
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:TimeSeriesExperiment.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings TimeSeriesExperiment_1.12.0.tar.gz |
StartedAt: 2022-04-12 19:24:26 -0400 (Tue, 12 Apr 2022) |
EndedAt: 2022-04-12 19:30:31 -0400 (Tue, 12 Apr 2022) |
EllapsedTime: 364.4 seconds |
RetCode: 0 |
Status: OK |
CheckDir: TimeSeriesExperiment.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:TimeSeriesExperiment.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings TimeSeriesExperiment_1.12.0.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/Users/biocbuild/bbs-3.14-bioc/meat/TimeSeriesExperiment.Rcheck’ * using R version 4.1.3 (2022-03-10) * using platform: x86_64-apple-darwin17.0 (64-bit) * using session charset: UTF-8 * using option ‘--no-vignettes’ * checking for file ‘TimeSeriesExperiment/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘TimeSeriesExperiment’ version ‘1.12.0’ * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘TimeSeriesExperiment’ can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... NOTE Unexported object imported by a ':::' call: ‘S4Vectors:::selectSome’ See the note in ?`:::` about the use of this operator. * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... NOTE clusterTimeSeries: no visible binding for global variable ‘freq’ clusterTimeSeries: no visible binding for global variable ‘.’ Undefined global functions or variables: . freq * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of ‘data’ directory ... OK * checking data for non-ASCII characters ... OK * checking data for ASCII and uncompressed saves ... OK * checking files in ‘vignettes’ ... OK * checking examples ... OK Examples with CPU (user + system) or elapsed time > 5s user system elapsed differentialExpression 22.135 0.484 22.637 plotTimeSeriesPCA 9.097 0.613 9.788 * checking for unstated dependencies in vignettes ... OK * checking package vignettes in ‘inst/doc’ ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: 2 NOTEs See ‘/Users/biocbuild/bbs-3.14-bioc/meat/TimeSeriesExperiment.Rcheck/00check.log’ for details.
TimeSeriesExperiment.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL TimeSeriesExperiment ### ############################################################################## ############################################################################## * installing to library ‘/Library/Frameworks/R.framework/Versions/4.1/Resources/library’ * installing *source* package ‘TimeSeriesExperiment’ ... ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (TimeSeriesExperiment)
TimeSeriesExperiment.Rcheck/TimeSeriesExperiment-Ex.timings
name | user | system | elapsed | |
TimeSeriesExperiment | 0.595 | 0.004 | 0.600 | |
addLags | 0.892 | 0.038 | 0.931 | |
clusterAssignment | 1.198 | 0.026 | 1.224 | |
clusterData | 0.244 | 0.007 | 0.251 | |
clusterTimeSeries | 0.857 | 0.028 | 0.885 | |
colData | 0.067 | 0.003 | 0.069 | |
collapseReplicates | 0.172 | 0.005 | 0.177 | |
collapsed-data | 0.469 | 0.010 | 0.479 | |
dataToTimeSeries | 0.076 | 0.002 | 0.077 | |
differentialExpression | 22.135 | 0.484 | 22.637 | |
dimensionReduction | 0.120 | 0.003 | 0.123 | |
filterFeatures | 0.156 | 0.004 | 0.159 | |
groups | 0.034 | 0.003 | 0.037 | |
makeTimeSeries | 0.358 | 0.018 | 0.376 | |
makeTimeSeriesExperimentFromExpressionSet | 0.002 | 0.001 | 0.002 | |
makeTimeSeriesExperimentFromSummarizedExperiment | 0.546 | 0.002 | 0.550 | |
meltMatrix | 0.028 | 0.001 | 0.029 | |
normalizeData | 0.089 | 0.004 | 0.093 | |
pathwayEnrichment | 1.125 | 0.071 | 1.219 | |
pipe | 0.000 | 0.001 | 0.001 | |
plotEnrichment | 1.161 | 0.022 | 1.188 | |
plotHeatmap | 0.069 | 0.003 | 0.072 | |
plotSamplePCA | 0.424 | 0.005 | 0.429 | |
plotTimeSeries | 2.967 | 0.046 | 3.087 | |
plotTimeSeriesClusters | 2.882 | 0.031 | 2.915 | |
plotTimeSeriesPCA | 9.097 | 0.613 | 9.788 | |
replicates | 0.037 | 0.002 | 0.040 | |
rowData | 0.079 | 0.003 | 0.082 | |
row_and_colnames | 0.033 | 0.002 | 0.035 | |
runPCA | 0.121 | 0.002 | 0.123 | |
timeSeries | 0.683 | 0.482 | 1.166 | |
timepointDE | 0.231 | 0.003 | 0.234 | |
timepoints | 0.059 | 0.003 | 0.062 | |
trajectoryDE | 0.269 | 0.015 | 0.284 | |
varianceStabilization | 0.004 | 0.001 | 0.004 | |