Aaron Lun
| Snapshot Date: 2022-04-12 01:55:07 -0400 (Tue, 12 Apr 2022) |
| git_url: https://git.bioconductor.org/packages/TileDBArray |
| git_branch: RELEASE_3_14 |
| git_last_commit: fa2ccec |
| git_last_commit_date: 2021-10-26 13:02:51 -0400 (Tue, 26 Oct 2021) |
| Back to Multiple platform build/check report for BioC 3.14 |
|
This page was generated on 2022-04-13 12:07:29 -0400 (Wed, 13 Apr 2022).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 20.04.4 LTS) | x86_64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4324 |
| tokay2 | Windows Server 2012 R2 Standard | x64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4077 |
| machv2 | macOS 10.14.6 Mojave | x86_64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4137 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
|
To the developers/maintainers of the TileDBArray package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/TileDBArray.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 1954/2083 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| TileDBArray 1.4.0 (landing page) Aaron Lun
| nebbiolo2 | Linux (Ubuntu 20.04.4 LTS) / x86_64 | OK | OK | WARNINGS | | ||||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | WARNINGS | OK | | ||||||||
| machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | WARNINGS | OK | | ||||||||
| Package: TileDBArray |
| Version: 1.4.0 |
| Command: C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:TileDBArray.install-out.txt --library=C:\Users\biocbuild\bbs-3.14-bioc\R\library --no-vignettes --timings TileDBArray_1.4.0.tar.gz |
| StartedAt: 2022-04-13 04:02:51 -0400 (Wed, 13 Apr 2022) |
| EndedAt: 2022-04-13 04:06:28 -0400 (Wed, 13 Apr 2022) |
| EllapsedTime: 216.3 seconds |
| RetCode: 0 |
| Status: WARNINGS |
| CheckDir: TileDBArray.Rcheck |
| Warnings: 4 |
############################################################################## ############################################################################## ### ### Running command: ### ### C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:TileDBArray.install-out.txt --library=C:\Users\biocbuild\bbs-3.14-bioc\R\library --no-vignettes --timings TileDBArray_1.4.0.tar.gz ### ############################################################################## ############################################################################## * using log directory 'C:/Users/biocbuild/bbs-3.14-bioc/meat/TileDBArray.Rcheck' * using R version 4.1.3 (2022-03-10) * using platform: x86_64-w64-mingw32 (64-bit) * using session charset: ISO8859-1 * using option '--no-vignettes' * checking for file 'TileDBArray/DESCRIPTION' ... OK * this is package 'TileDBArray' version '1.4.0' * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking whether package 'TileDBArray' can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking 'build' directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * loading checks for arch 'i386' ** checking whether the package can be loaded ... OK ** checking whether the package can be loaded with stated dependencies ... OK ** checking whether the package can be unloaded cleanly ... OK ** checking whether the namespace can be loaded with stated dependencies ... OK ** checking whether the namespace can be unloaded cleanly ... OK * loading checks for arch 'x64' ** checking whether the package can be loaded ... OK ** checking whether the package can be loaded with stated dependencies ... OK ** checking whether the package can be unloaded cleanly ... OK ** checking whether the namespace can be loaded with stated dependencies ... OK ** checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... NOTE Package tiledb was not found in the pkg-config search path. Perhaps you should add the directory containing `tiledb.pc' to the PKG_CONFIG_PATH environment variable No package 'tiledb' found Package tiledb was not found in the pkg-config search path. Perhaps you should add the directory containing `tiledb.pc' to the PKG_CONFIG_PATH environment variable No package 'tiledb' found ':::' call which should be '::': 'tiledb:::tiledb_datatype_R_type' See the note in ?`:::` about the use of this operator. * checking S3 generic/method consistency ... WARNING Package tiledb was not found in the pkg-config search path. Perhaps you should add the directory containing `tiledb.pc' to the PKG_CONFIG_PATH environment variable No package 'tiledb' found Package tiledb was not found in the pkg-config search path. Perhaps you should add the directory containing `tiledb.pc' to the PKG_CONFIG_PATH environment variable No package 'tiledb' found See section 'Generic functions and methods' in the 'Writing R Extensions' manual. * checking replacement functions ... WARNING Package tiledb was not found in the pkg-config search path. Perhaps you should add the directory containing `tiledb.pc' to the PKG_CONFIG_PATH environment variable No package 'tiledb' found Package tiledb was not found in the pkg-config search path. Perhaps you should add the directory containing `tiledb.pc' to the PKG_CONFIG_PATH environment variable No package 'tiledb' found The argument of a replacement function which corresponds to the right hand side must be named 'value'. * checking foreign function calls ... NOTE Package tiledb was not found in the pkg-config search path. Perhaps you should add the directory containing `tiledb.pc' to the PKG_CONFIG_PATH environment variable No package 'tiledb' found Package tiledb was not found in the pkg-config search path. Perhaps you should add the directory containing `tiledb.pc' to the PKG_CONFIG_PATH environment variable No package 'tiledb' found See chapter 'System and foreign language interfaces' in the 'Writing R Extensions' manual. * checking R code for possible problems ... NOTE Package tiledb was not found in the pkg-config search path. Perhaps you should add the directory containing `tiledb.pc' to the PKG_CONFIG_PATH environment variable No package 'tiledb' found Package tiledb was not found in the pkg-config search path. Perhaps you should add the directory containing `tiledb.pc' to the PKG_CONFIG_PATH environment variable No package 'tiledb' found * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... WARNING Package tiledb was not found in the pkg-config search path. Perhaps you should add the directory containing `tiledb.pc' to the PKG_CONFIG_PATH environment variable No package 'tiledb' found Package tiledb was not found in the pkg-config search path. Perhaps you should add the directory containing `tiledb.pc' to the PKG_CONFIG_PATH environment variable No package 'tiledb' found All user-level objects in a package should have documentation entries. See chapter 'Writing R documentation files' in the 'Writing R Extensions' manual. * checking for code/documentation mismatches ... WARNING Package tiledb was not found in the pkg-config search path. Perhaps you should add the directory containing `tiledb.pc' to the PKG_CONFIG_PATH environment variable No package 'tiledb' found Package tiledb was not found in the pkg-config search path. Perhaps you should add the directory containing `tiledb.pc' to the PKG_CONFIG_PATH environment variable No package 'tiledb' found Package tiledb was not found in the pkg-config search path. Perhaps you should add the directory containing `tiledb.pc' to the PKG_CONFIG_PATH environment variable No package 'tiledb' found Package tiledb was not found in the pkg-config search path. Perhaps you should add the directory containing `tiledb.pc' to the PKG_CONFIG_PATH environment variable No package 'tiledb' found Package tiledb was not found in the pkg-config search path. Perhaps you should add the directory containing `tiledb.pc' to the PKG_CONFIG_PATH environment variable No package 'tiledb' found Package tiledb was not found in the pkg-config search path. Perhaps you should add the directory containing `tiledb.pc' to the PKG_CONFIG_PATH environment variable No package 'tiledb' found * checking Rd \usage sections ... NOTE Package tiledb was not found in the pkg-config search path. Perhaps you should add the directory containing `tiledb.pc' to the PKG_CONFIG_PATH environment variable No package 'tiledb' found Package tiledb was not found in the pkg-config search path. Perhaps you should add the directory containing `tiledb.pc' to the PKG_CONFIG_PATH environment variable No package 'tiledb' found The \usage entries for S3 methods should use the \method markup and not their full name. See chapter 'Writing R documentation files' in the 'Writing R Extensions' manual. * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking line endings in shell scripts ... OK * checking line endings in C/C++/Fortran sources/headers ... OK * checking compiled code ... NOTE Note: information on .o files for i386 is not available Note: information on .o files for x64 is not available File 'C:/Users/biocbuild/bbs-3.14-bioc/R/library/TileDBArray/libs/i386/TileDBArray.dll': Found 'abort', possibly from 'abort' (C), 'runtime' (Fortran) Found 'exit', possibly from 'exit' (C), 'stop' (Fortran) Found 'printf', possibly from 'printf' (C) File 'C:/Users/biocbuild/bbs-3.14-bioc/R/library/TileDBArray/libs/x64/TileDBArray.dll': Found 'abort', possibly from 'abort' (C), 'runtime' (Fortran) Found 'exit', possibly from 'exit' (C), 'stop' (Fortran) Found 'printf', possibly from 'printf' (C) Compiled code should not call entry points which might terminate R nor write to stdout/stderr instead of to the console, nor use Fortran I/O nor system RNGs. The detected symbols are linked into the code but might come from libraries and not actually be called. See 'Writing portable packages' in the 'Writing R Extensions' manual. * checking files in 'vignettes' ... OK * checking examples ... ** running examples for arch 'i386' ... OK ** running examples for arch 'x64' ... OK * checking for unstated dependencies in 'tests' ... OK * checking tests ... ** running tests for arch 'i386' ... Running 'testthat.R' OK ** running tests for arch 'x64' ... Running 'testthat.R' OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes in 'inst/doc' ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: 4 WARNINGs, 5 NOTEs See 'C:/Users/biocbuild/bbs-3.14-bioc/meat/TileDBArray.Rcheck/00check.log' for details.
TileDBArray.Rcheck/00install.out
##############################################################################
##############################################################################
###
### Running command:
###
### C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/TileDBArray_1.4.0.tar.gz && rm -rf TileDBArray.buildbin-libdir && mkdir TileDBArray.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=TileDBArray.buildbin-libdir TileDBArray_1.4.0.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL TileDBArray_1.4.0.zip && rm TileDBArray_1.4.0.tar.gz TileDBArray_1.4.0.zip
###
##############################################################################
##############################################################################
% Total % Received % Xferd Average Speed Time Time Time Current
Dload Upload Total Spent Left Speed
0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0
100 18219 100 18219 0 0 151k 0 --:--:-- --:--:-- --:--:-- 153k
install for i386
* installing *source* package 'TileDBArray' ...
** using staged installation
** libs
"C:/rtools40/mingw32/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/Rcpp/include' -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c RcppExports.cpp -o RcppExports.o
"C:/rtools40/mingw32/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/Rcpp/include' -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c remap_indices.cpp -o remap_indices.o
C:/rtools40/mingw32/bin/g++ -std=gnu++11 -shared -s -static-libgcc -o TileDBArray.dll tmp.def RcppExports.o remap_indices.o -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.14-/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.14-bioc/meat/TileDBArray.buildbin-libdir/00LOCK-TileDBArray/00new/TileDBArray/libs/i386
** R
** byte-compile and prepare package for lazy loading
Package tiledb was not found in the pkg-config search path.
Perhaps you should add the directory containing `tiledb.pc'
to the PKG_CONFIG_PATH environment variable
No package 'tiledb' found
Warning in system2(pkgcfg, c("tiledb", "--cflags"), stdout = TRUE) :
running command '"c:\rtools40\mingw32\bin\PKG-CO~1.EXE" tiledb --cflags' had status 1
Package tiledb was not found in the pkg-config search path.
Perhaps you should add the directory containing `tiledb.pc'
to the PKG_CONFIG_PATH environment variable
No package 'tiledb' found
Warning in system2(pkgcfg, c("tiledb", "--libs"), stdout = TRUE) :
running command '"c:\rtools40\mingw32\bin\PKG-CO~1.EXE" tiledb --libs' had status 1
** help
*** installing help indices
converting help for package 'TileDBArray'
finding HTML links ... done
TileDBArray-globals html
finding level-2 HTML links ... done
TileDBArray-pkg html
TileDBArray html
TileDBRealizationSink html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
Package tiledb was not found in the pkg-config search path.
Perhaps you should add the directory containing `tiledb.pc'
to the PKG_CONFIG_PATH environment variable
No package 'tiledb' found
Warning in system2(pkgcfg, c("tiledb", "--cflags"), stdout = TRUE) :
running command '"c:\rtools40\mingw32\bin\PKG-CO~1.EXE" tiledb --cflags' had status 1
Package tiledb was not found in the pkg-config search path.
Perhaps you should add the directory containing `tiledb.pc'
to the PKG_CONFIG_PATH environment variable
No package 'tiledb' found
Warning in system2(pkgcfg, c("tiledb", "--libs"), stdout = TRUE) :
running command '"c:\rtools40\mingw32\bin\PKG-CO~1.EXE" tiledb --libs' had status 1
** testing if installed package can be loaded from final location
Package tiledb was not found in the pkg-config search path.
Perhaps you should add the directory containing `tiledb.pc'
to the PKG_CONFIG_PATH environment variable
No package 'tiledb' found
Warning in system2(pkgcfg, c("tiledb", "--cflags"), stdout = TRUE) :
running command '"c:\rtools40\mingw32\bin\PKG-CO~1.EXE" tiledb --cflags' had status 1
Package tiledb was not found in the pkg-config search path.
Perhaps you should add the directory containing `tiledb.pc'
to the PKG_CONFIG_PATH environment variable
No package 'tiledb' found
Warning in system2(pkgcfg, c("tiledb", "--libs"), stdout = TRUE) :
running command '"c:\rtools40\mingw32\bin\PKG-CO~1.EXE" tiledb --libs' had status 1
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'TileDBArray' ...
** libs
"C:/rtools40/mingw64/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/Rcpp/include' -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c RcppExports.cpp -o RcppExports.o
"C:/rtools40/mingw64/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/Rcpp/include' -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c remap_indices.cpp -o remap_indices.o
C:/rtools40/mingw64/bin/g++ -std=gnu++11 -shared -s -static-libgcc -o TileDBArray.dll tmp.def RcppExports.o remap_indices.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.14-/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.14-bioc/meat/TileDBArray.buildbin-libdir/TileDBArray/libs/x64
** testing if installed package can be loaded
Package tiledb was not found in the pkg-config search path.
Perhaps you should add the directory containing `tiledb.pc'
to the PKG_CONFIG_PATH environment variable
No package 'tiledb' found
Warning in system2(pkgcfg, c("tiledb", "--cflags"), stdout = TRUE) :
running command '"c:\rtools40\mingw32\bin\PKG-CO~1.EXE" tiledb --cflags' had status 1
Package tiledb was not found in the pkg-config search path.
Perhaps you should add the directory containing `tiledb.pc'
to the PKG_CONFIG_PATH environment variable
No package 'tiledb' found
Warning in system2(pkgcfg, c("tiledb", "--libs"), stdout = TRUE) :
running command '"c:\rtools40\mingw32\bin\PKG-CO~1.EXE" tiledb --libs' had status 1
* MD5 sums
packaged installation of 'TileDBArray' as TileDBArray_1.4.0.zip
* DONE (TileDBArray)
* installing to library 'C:/Users/biocbuild/bbs-3.14-bioc/R/library'
package 'TileDBArray' successfully unpacked and MD5 sums checked
|
TileDBArray.Rcheck/tests_i386/testthat.Rout
R version 4.1.3 (2022-03-10) -- "One Push-Up"
Copyright (C) 2022 The R Foundation for Statistical Computing
Platform: i386-w64-mingw32/i386 (32-bit)
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> library(testthat)
> library(TileDBArray)
Loading required package: DelayedArray
Loading required package: stats4
Loading required package: Matrix
Loading required package: BiocGenerics
Attaching package: 'BiocGenerics'
The following objects are masked from 'package:stats':
IQR, mad, sd, var, xtabs
The following objects are masked from 'package:base':
Filter, Find, Map, Position, Reduce, anyDuplicated, append,
as.data.frame, basename, cbind, colnames, dirname, do.call,
duplicated, eval, evalq, get, grep, grepl, intersect, is.unsorted,
lapply, mapply, match, mget, order, paste, pmax, pmax.int, pmin,
pmin.int, rank, rbind, rownames, sapply, setdiff, sort, table,
tapply, union, unique, unsplit, which.max, which.min
Loading required package: MatrixGenerics
Loading required package: matrixStats
Attaching package: 'MatrixGenerics'
The following objects are masked from 'package:matrixStats':
colAlls, colAnyNAs, colAnys, colAvgsPerRowSet, colCollapse,
colCounts, colCummaxs, colCummins, colCumprods, colCumsums,
colDiffs, colIQRDiffs, colIQRs, colLogSumExps, colMadDiffs,
colMads, colMaxs, colMeans2, colMedians, colMins, colOrderStats,
colProds, colQuantiles, colRanges, colRanks, colSdDiffs, colSds,
colSums2, colTabulates, colVarDiffs, colVars, colWeightedMads,
colWeightedMeans, colWeightedMedians, colWeightedSds,
colWeightedVars, rowAlls, rowAnyNAs, rowAnys, rowAvgsPerColSet,
rowCollapse, rowCounts, rowCummaxs, rowCummins, rowCumprods,
rowCumsums, rowDiffs, rowIQRDiffs, rowIQRs, rowLogSumExps,
rowMadDiffs, rowMads, rowMaxs, rowMeans2, rowMedians, rowMins,
rowOrderStats, rowProds, rowQuantiles, rowRanges, rowRanks,
rowSdDiffs, rowSds, rowSums2, rowTabulates, rowVarDiffs, rowVars,
rowWeightedMads, rowWeightedMeans, rowWeightedMedians,
rowWeightedSds, rowWeightedVars
Loading required package: S4Vectors
Attaching package: 'S4Vectors'
The following objects are masked from 'package:Matrix':
expand, unname
The following objects are masked from 'package:base':
I, expand.grid, unname
Loading required package: IRanges
Attaching package: 'IRanges'
The following object is masked from 'package:grDevices':
windows
Attaching package: 'DelayedArray'
The following objects are masked from 'package:base':
aperm, apply, rowsum, scale, sweep
Package tiledb was not found in the pkg-config search path.
Perhaps you should add the directory containing `tiledb.pc'
to the PKG_CONFIG_PATH environment variable
No package 'tiledb' found
Package tiledb was not found in the pkg-config search path.
Perhaps you should add the directory containing `tiledb.pc'
to the PKG_CONFIG_PATH environment variable
No package 'tiledb' found
Warning messages:
1: In system2(pkgcfg, c("tiledb", "--cflags"), stdout = TRUE) :
running command '"c:\rtools40\mingw32\bin\PKG-CO~1.EXE" tiledb --cflags' had status 1
2: In system2(pkgcfg, c("tiledb", "--libs"), stdout = TRUE) :
running command '"c:\rtools40\mingw32\bin\PKG-CO~1.EXE" tiledb --libs' had status 1
> test_check("TileDBArray")
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 224 ]
>
> proc.time()
user system elapsed
15.92 1.82 20.23
|
TileDBArray.Rcheck/tests_x64/testthat.Rout
R version 4.1.3 (2022-03-10) -- "One Push-Up"
Copyright (C) 2022 The R Foundation for Statistical Computing
Platform: x86_64-w64-mingw32/x64 (64-bit)
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> library(testthat)
> library(TileDBArray)
Loading required package: DelayedArray
Loading required package: stats4
Loading required package: Matrix
Loading required package: BiocGenerics
Attaching package: 'BiocGenerics'
The following objects are masked from 'package:stats':
IQR, mad, sd, var, xtabs
The following objects are masked from 'package:base':
Filter, Find, Map, Position, Reduce, anyDuplicated, append,
as.data.frame, basename, cbind, colnames, dirname, do.call,
duplicated, eval, evalq, get, grep, grepl, intersect, is.unsorted,
lapply, mapply, match, mget, order, paste, pmax, pmax.int, pmin,
pmin.int, rank, rbind, rownames, sapply, setdiff, sort, table,
tapply, union, unique, unsplit, which.max, which.min
Loading required package: MatrixGenerics
Loading required package: matrixStats
Attaching package: 'MatrixGenerics'
The following objects are masked from 'package:matrixStats':
colAlls, colAnyNAs, colAnys, colAvgsPerRowSet, colCollapse,
colCounts, colCummaxs, colCummins, colCumprods, colCumsums,
colDiffs, colIQRDiffs, colIQRs, colLogSumExps, colMadDiffs,
colMads, colMaxs, colMeans2, colMedians, colMins, colOrderStats,
colProds, colQuantiles, colRanges, colRanks, colSdDiffs, colSds,
colSums2, colTabulates, colVarDiffs, colVars, colWeightedMads,
colWeightedMeans, colWeightedMedians, colWeightedSds,
colWeightedVars, rowAlls, rowAnyNAs, rowAnys, rowAvgsPerColSet,
rowCollapse, rowCounts, rowCummaxs, rowCummins, rowCumprods,
rowCumsums, rowDiffs, rowIQRDiffs, rowIQRs, rowLogSumExps,
rowMadDiffs, rowMads, rowMaxs, rowMeans2, rowMedians, rowMins,
rowOrderStats, rowProds, rowQuantiles, rowRanges, rowRanks,
rowSdDiffs, rowSds, rowSums2, rowTabulates, rowVarDiffs, rowVars,
rowWeightedMads, rowWeightedMeans, rowWeightedMedians,
rowWeightedSds, rowWeightedVars
Loading required package: S4Vectors
Attaching package: 'S4Vectors'
The following objects are masked from 'package:Matrix':
expand, unname
The following objects are masked from 'package:base':
I, expand.grid, unname
Loading required package: IRanges
Attaching package: 'IRanges'
The following object is masked from 'package:grDevices':
windows
Attaching package: 'DelayedArray'
The following objects are masked from 'package:base':
aperm, apply, rowsum, scale, sweep
Package tiledb was not found in the pkg-config search path.
Perhaps you should add the directory containing `tiledb.pc'
to the PKG_CONFIG_PATH environment variable
No package 'tiledb' found
Package tiledb was not found in the pkg-config search path.
Perhaps you should add the directory containing `tiledb.pc'
to the PKG_CONFIG_PATH environment variable
No package 'tiledb' found
Warning messages:
1: In system2(pkgcfg, c("tiledb", "--cflags"), stdout = TRUE) :
running command '"c:\rtools40\mingw32\bin\PKG-CO~1.EXE" tiledb --cflags' had status 1
2: In system2(pkgcfg, c("tiledb", "--libs"), stdout = TRUE) :
running command '"c:\rtools40\mingw32\bin\PKG-CO~1.EXE" tiledb --libs' had status 1
> test_check("TileDBArray")
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 224 ]
>
> proc.time()
user system elapsed
16.78 1.12 20.35
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TileDBArray.Rcheck/examples_i386/TileDBArray-Ex.timings
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TileDBArray.Rcheck/examples_x64/TileDBArray-Ex.timings
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