Back to Multiple platform build/check report for BioC 3.14 |
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This page was generated on 2022-04-13 12:08:51 -0400 (Wed, 13 Apr 2022).
Hostname | OS | Arch (*) | R version | Installed pkgs |
---|---|---|---|---|
nebbiolo2 | Linux (Ubuntu 20.04.4 LTS) | x86_64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4324 |
tokay2 | Windows Server 2012 R2 Standard | x64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4077 |
machv2 | macOS 10.14.6 Mojave | x86_64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4137 |
Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X |
To the developers/maintainers of the SPLINTER package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/SPLINTER.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
Package 1865/2083 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
SPLINTER 1.20.0 (landing page) Diana Low
| nebbiolo2 | Linux (Ubuntu 20.04.4 LTS) / x86_64 | OK | ERROR | skipped | |||||||||
tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | WARNINGS | OK | |||||||||
machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | |||||||||
Package: SPLINTER |
Version: 1.20.0 |
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:SPLINTER.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings SPLINTER_1.20.0.tar.gz |
StartedAt: 2022-04-12 18:58:29 -0400 (Tue, 12 Apr 2022) |
EndedAt: 2022-04-12 19:06:21 -0400 (Tue, 12 Apr 2022) |
EllapsedTime: 471.8 seconds |
RetCode: 0 |
Status: OK |
CheckDir: SPLINTER.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:SPLINTER.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings SPLINTER_1.20.0.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/Users/biocbuild/bbs-3.14-bioc/meat/SPLINTER.Rcheck’ * using R version 4.1.3 (2022-03-10) * using platform: x86_64-apple-darwin17.0 (64-bit) * using session charset: UTF-8 * using option ‘--no-vignettes’ * checking for file ‘SPLINTER/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘SPLINTER’ version ‘1.20.0’ * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘SPLINTER’ can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of ‘data’ directory ... OK * checking data for non-ASCII characters ... OK * checking LazyData ... OK * checking data for ASCII and uncompressed saves ... OK * checking sizes of PDF files under ‘inst/doc’ ... OK * checking files in ‘vignettes’ ... OK * checking examples ... OK Examples with CPU (user + system) or elapsed time > 5s user system elapsed getPCRsizes 25.542 0.222 25.780 eventPlot 17.071 0.251 17.342 * checking for unstated dependencies in vignettes ... OK * checking package vignettes in ‘inst/doc’ ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: OK
SPLINTER.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL SPLINTER ### ############################################################################## ############################################################################## * installing to library ‘/Library/Frameworks/R.framework/Versions/4.1/Resources/library’ * installing *source* package ‘SPLINTER’ ... ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading Creating a generic function for 'toJSON' from package 'jsonlite' in package 'googleVis' ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location Creating a generic function for 'toJSON' from package 'jsonlite' in package 'googleVis' ** testing if installed package can be loaded from final location Creating a generic function for 'toJSON' from package 'jsonlite' in package 'googleVis' ** testing if installed package keeps a record of temporary installation path * DONE (SPLINTER)
SPLINTER.Rcheck/SPLINTER-Ex.timings
name | user | system | elapsed | |
acceptor.m | 0.003 | 0.002 | 0.006 | |
addEnsemblAnnotation | 0.007 | 0.001 | 0.008 | |
callPrimer3 | 0 | 0 | 0 | |
checkPrimer | 0.180 | 0.018 | 0.198 | |
compatible_cds | 0.001 | 0.001 | 0.002 | |
compatible_tx | 0.002 | 0.001 | 0.003 | |
donor.m | 0.001 | 0.002 | 0.004 | |
eventOutcomeCompare | 2.297 | 0.097 | 2.396 | |
eventOutcomeTranslate | 0.781 | 0.074 | 0.856 | |
eventPlot | 17.071 | 0.251 | 17.342 | |
extendROI | 1.484 | 0.037 | 1.521 | |
extractSpliceEvents | 0.004 | 0.001 | 0.004 | |
extractSpliceSites | 0.209 | 0.001 | 0.209 | |
findCompatibleEvents | 0.720 | 0.001 | 0.721 | |
findCompatibleExon | 0.383 | 0.001 | 0.385 | |
findTX | 0.049 | 0.001 | 0.050 | |
getPCRsizes | 25.542 | 0.222 | 25.780 | |
getRegionDNA | 0.468 | 0.016 | 0.484 | |
insertRegion | 0.353 | 0.003 | 0.356 | |
makeROI | 0.588 | 0.002 | 0.589 | |
makeUniqueIDs | 0.003 | 0.001 | 0.004 | |
pcr_result1 | 0.002 | 0.001 | 0.002 | |
plot_seqlogo | 0.064 | 0.003 | 0.066 | |
primers | 0.001 | 0.001 | 0.002 | |
psiPlot | 0.401 | 0.009 | 0.412 | |
region_minus_exon | 0.002 | 0.002 | 0.003 | |
roi | 0.001 | 0.002 | 0.002 | |
shapiroAcceptor | 0.714 | 0.022 | 0.740 | |
shapiroDonor | 0.767 | 0.019 | 0.787 | |
splice_data | 0.001 | 0.001 | 0.003 | |
splice_fasta | 0.001 | 0.001 | 0.003 | |
splitPCRhit | 0.034 | 0.000 | 0.034 | |
thecds | 0.000 | 0.000 | 0.001 | |
theexons | 0.002 | 0.001 | 0.003 | |
valid_cds | 0.002 | 0.002 | 0.003 | |
valid_tx | 0.001 | 0.001 | 0.002 | |