Back to Multiple platform build/check report for BioC 3.14 |
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This page was generated on 2022-04-13 12:07:23 -0400 (Wed, 13 Apr 2022).
Hostname | OS | Arch (*) | R version | Installed pkgs |
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nebbiolo2 | Linux (Ubuntu 20.04.4 LTS) | x86_64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4324 |
tokay2 | Windows Server 2012 R2 Standard | x64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4077 |
machv2 | macOS 10.14.6 Mojave | x86_64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4137 |
Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X |
To the developers/maintainers of the SNPhood package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/SNPhood.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
Package 1830/2083 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
SNPhood 1.24.0 (landing page) Christian Arnold
| nebbiolo2 | Linux (Ubuntu 20.04.4 LTS) / x86_64 | OK | OK | OK | |||||||||
tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | |||||||||
machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | |||||||||
Package: SNPhood |
Version: 1.24.0 |
Command: C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:SNPhood.install-out.txt --library=C:\Users\biocbuild\bbs-3.14-bioc\R\library --no-vignettes --timings SNPhood_1.24.0.tar.gz |
StartedAt: 2022-04-13 03:14:00 -0400 (Wed, 13 Apr 2022) |
EndedAt: 2022-04-13 03:28:06 -0400 (Wed, 13 Apr 2022) |
EllapsedTime: 846.2 seconds |
RetCode: 0 |
Status: OK |
CheckDir: SNPhood.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:SNPhood.install-out.txt --library=C:\Users\biocbuild\bbs-3.14-bioc\R\library --no-vignettes --timings SNPhood_1.24.0.tar.gz ### ############################################################################## ############################################################################## * using log directory 'C:/Users/biocbuild/bbs-3.14-bioc/meat/SNPhood.Rcheck' * using R version 4.1.3 (2022-03-10) * using platform: x86_64-w64-mingw32 (64-bit) * using session charset: ISO8859-1 * using option '--no-vignettes' * checking for file 'SNPhood/DESCRIPTION' ... OK * this is package 'SNPhood' version '1.24.0' * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking whether package 'SNPhood' can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking 'build' directory ... OK * checking DESCRIPTION meta-information ... NOTE BugReports field is not a suitable URL but appears to contain an email address not specified by mailto: nor contained in < > use the Contact field instead * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * loading checks for arch 'i386' ** checking whether the package can be loaded ... OK ** checking whether the package can be loaded with stated dependencies ... OK ** checking whether the package can be unloaded cleanly ... OK ** checking whether the namespace can be loaded with stated dependencies ... OK ** checking whether the namespace can be unloaded cleanly ... OK * loading checks for arch 'x64' ** checking whether the package can be loaded ... OK ** checking whether the package can be loaded with stated dependencies ... OK ** checking whether the package can be unloaded cleanly ... OK ** checking whether the namespace can be loaded with stated dependencies ... OK ** checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... NOTE .calcBinomTestVector: no visible binding for global variable 'pp' Undefined global functions or variables: pp * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of 'data' directory ... OK * checking data for non-ASCII characters ... OK * checking LazyData ... OK * checking data for ASCII and uncompressed saves ... OK * checking files in 'vignettes' ... OK * checking examples ... ** running examples for arch 'i386' ... OK Examples with CPU (user + system) or elapsed time > 5s user system elapsed analyzeSNPhood 76.89 3.85 100.47 plotAllelicBiasResults 23.06 0.99 24.02 plotAndSummarizeAllelicBiasTest 22.81 0.73 23.53 testForAllelicBiases 21.89 1.15 22.96 plotFDRResults 21.44 0.99 22.38 associateGenotypes 7.91 0.07 7.99 results 5.78 2.06 7.84 ** running examples for arch 'x64' ... OK Examples with CPU (user + system) or elapsed time > 5s user system elapsed analyzeSNPhood 67.80 4.40 72.20 plotAllelicBiasResults 25.96 0.04 26.00 plotAndSummarizeAllelicBiasTest 23.90 0.11 24.00 plotFDRResults 21.73 0.07 21.78 testForAllelicBiases 21.37 0.07 21.38 associateGenotypes 7.45 0.03 7.49 results 4.21 2.14 6.34 * checking for unstated dependencies in vignettes ... OK * checking package vignettes in 'inst/doc' ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: 2 NOTEs See 'C:/Users/biocbuild/bbs-3.14-bioc/meat/SNPhood.Rcheck/00check.log' for details.
SNPhood.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/SNPhood_1.24.0.tar.gz && rm -rf SNPhood.buildbin-libdir && mkdir SNPhood.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=SNPhood.buildbin-libdir SNPhood_1.24.0.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL SNPhood_1.24.0.zip && rm SNPhood_1.24.0.tar.gz SNPhood_1.24.0.zip ### ############################################################################## ############################################################################## % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 56 3962k 56 2242k 0 0 2227k 0 0:00:01 0:00:01 --:--:-- 2226k 100 3962k 100 3962k 0 0 2594k 0 0:00:01 0:00:01 --:--:-- 2595k install for i386 * installing *source* package 'SNPhood' ... ** using staged installation ** R ** data *** moving datasets to lazyload DB ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'SNPhood' finding HTML links ... done SNPhood-class html SNPhood html SNPhood.o html analyzeSNPhood html finding level-2 HTML links ... done annotation-methods html annotationBins html annotationBins2 html annotationDatasets html annotationReadGroups html annotationRegions html associateGenotypes html bins-methods html changeObjectIntegrityChecking html collectFiles html convertToAllelicFractions html counts-method html datasets-methods html deleteDatasets html deleteReadGroups html deleteRegions html enrichment-methods html getDefaultParameterList html mergeReadGroups html parameters-methods html plotAllelicBiasResults html plotAllelicBiasResultsOverview html plotAndCalculateCorrelationDatasets html plotAndCalculateWeakAndStrongGenotype html plotAndClusterMatrix html plotAndSummarizeAllelicBiasTest html plotBinCounts html plotClusterAverage html plotFDRResults html plotGenotypesPerCluster html plotGenotypesPerSNP html plotRegionCounts html readGroups-methods html regions-methods html renameBins html renameDatasets html renameReadGroups html renameRegions html results html testForAllelicBiases html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path install for x64 * installing *source* package 'SNPhood' ... ** testing if installed package can be loaded * MD5 sums packaged installation of 'SNPhood' as SNPhood_1.24.0.zip * DONE (SNPhood) * installing to library 'C:/Users/biocbuild/bbs-3.14-bioc/R/library' package 'SNPhood' successfully unpacked and MD5 sums checked
SNPhood.Rcheck/examples_i386/SNPhood-Ex.timings
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SNPhood.Rcheck/examples_x64/SNPhood-Ex.timings
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