Bora Uyar
| Snapshot Date: 2022-04-12 01:55:07 -0400 (Tue, 12 Apr 2022) |
| git_url: https://git.bioconductor.org/packages/RCAS |
| git_branch: RELEASE_3_14 |
| git_last_commit: 1d023c7 |
| git_last_commit_date: 2021-10-26 12:29:09 -0400 (Tue, 26 Oct 2021) |
| Back to Multiple platform build/check report for BioC 3.14 |
|
This page was generated on 2022-04-13 12:07:11 -0400 (Wed, 13 Apr 2022).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 20.04.4 LTS) | x86_64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4324 |
| tokay2 | Windows Server 2012 R2 Standard | x64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4077 |
| machv2 | macOS 10.14.6 Mojave | x86_64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4137 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
|
To the developers/maintainers of the RCAS package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/RCAS.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 1541/2083 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| RCAS 1.20.0 (landing page) Bora Uyar
| nebbiolo2 | Linux (Ubuntu 20.04.4 LTS) / x86_64 | OK | OK | OK | | ||||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | | ||||||||
| machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | | ||||||||
| Package: RCAS |
| Version: 1.20.0 |
| Command: C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/RCAS_1.20.0.tar.gz && rm -rf RCAS.buildbin-libdir && mkdir RCAS.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=RCAS.buildbin-libdir RCAS_1.20.0.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL RCAS_1.20.0.zip && rm RCAS_1.20.0.tar.gz RCAS_1.20.0.zip |
| StartedAt: 2022-04-12 06:50:35 -0400 (Tue, 12 Apr 2022) |
| EndedAt: 2022-04-12 06:53:11 -0400 (Tue, 12 Apr 2022) |
| EllapsedTime: 156.0 seconds |
| RetCode: 0 |
| Status: OK |
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### Running command:
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### C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/RCAS_1.20.0.tar.gz && rm -rf RCAS.buildbin-libdir && mkdir RCAS.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=RCAS.buildbin-libdir RCAS_1.20.0.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL RCAS_1.20.0.zip && rm RCAS_1.20.0.tar.gz RCAS_1.20.0.zip
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install for i386
* installing *source* package 'RCAS' ...
** using staged installation
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
Warning: replacing previous import 'Biostrings::pattern' by 'grid::pattern' when loading 'genomation'
** help
*** installing help indices
converting help for package 'RCAS'
finding HTML links ... done
calculateCoverageProfile html
calculateCoverageProfileFromTxdb html
calculateCoverageProfileList html
calculateCoverageProfileListFromTxdb html
checkSeqDb html
createControlRegions html
createDB html
createOrthologousGeneSetList html
deleteSampleDataFromDB html
discoverFeatureSpecificMotifs html
extractSequences html
findDifferentialMotifs html
findEnrichedFunctions html
generateKmers html
getFeatureBoundaryCoverage html
getFeatureBoundaryCoverageBin html
getFeatureBoundaryCoverageMulti html
getIntervalOverlapMatrix html
getMotifSummaryTable html
getTargetedGenesTable html
getTxdbFeatures html
getTxdbFeaturesFromGRanges html
gff html
importBed html
importBedFiles html
importGtf html
parseMsigdb html
plotFeatureBoundaryCoverage html
printMsigdbDataset html
queryGff html
queryRegions html
retrieveOrthologs html
runGSEA html
runMotifDiscovery html
runMotifRG html
runReport html
runReportMetaAnalysis html
runTopGO html
summarizeDatabaseContent html
summarizeQueryRegions html
summarizeQueryRegionsMulti html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
Warning: replacing previous import 'Biostrings::pattern' by 'grid::pattern' when loading 'genomation'
** testing if installed package can be loaded from final location
Warning: replacing previous import 'Biostrings::pattern' by 'grid::pattern' when loading 'genomation'
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'RCAS' ...
** testing if installed package can be loaded
Warning: replacing previous import 'Biostrings::pattern' by 'grid::pattern' when loading 'genomation'
* MD5 sums
packaged installation of 'RCAS' as RCAS_1.20.0.zip
* DONE (RCAS)
* installing to library 'C:/Users/biocbuild/bbs-3.14-bioc/R/library'
package 'RCAS' successfully unpacked and MD5 sums checked