Markus Riester
| Snapshot Date: 2022-04-12 01:55:07 -0400 (Tue, 12 Apr 2022) |
| git_url: https://git.bioconductor.org/packages/PureCN |
| git_branch: RELEASE_3_14 |
| git_last_commit: bbf93a7 |
| git_last_commit_date: 2022-03-01 11:51:14 -0400 (Tue, 01 Mar 2022) |
| Back to Multiple platform build/check report for BioC 3.14 |
|
This page was generated on 2022-04-13 12:07:08 -0400 (Wed, 13 Apr 2022).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 20.04.4 LTS) | x86_64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4324 |
| tokay2 | Windows Server 2012 R2 Standard | x64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4077 |
| machv2 | macOS 10.14.6 Mojave | x86_64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4137 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
|
To the developers/maintainers of the PureCN package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/PureCN.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 1487/2083 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| PureCN 2.0.2 (landing page) Markus Riester
| nebbiolo2 | Linux (Ubuntu 20.04.4 LTS) / x86_64 | OK | OK | OK | | ||||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | | ||||||||
| machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | | ||||||||
| Package: PureCN |
| Version: 2.0.2 |
| Command: C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/PureCN_2.0.2.tar.gz && rm -rf PureCN.buildbin-libdir && mkdir PureCN.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=PureCN.buildbin-libdir PureCN_2.0.2.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL PureCN_2.0.2.zip && rm PureCN_2.0.2.tar.gz PureCN_2.0.2.zip |
| StartedAt: 2022-04-12 06:16:43 -0400 (Tue, 12 Apr 2022) |
| EndedAt: 2022-04-12 06:19:02 -0400 (Tue, 12 Apr 2022) |
| EllapsedTime: 139.0 seconds |
| RetCode: 0 |
| Status: OK |
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### Running command:
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### C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/PureCN_2.0.2.tar.gz && rm -rf PureCN.buildbin-libdir && mkdir PureCN.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=PureCN.buildbin-libdir PureCN_2.0.2.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL PureCN_2.0.2.zip && rm PureCN_2.0.2.tar.gz PureCN_2.0.2.zip
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% Total % Received % Xferd Average Speed Time Time Time Current
Dload Upload Total Spent Left Speed
0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0
45 3006k 45 1353k 0 0 1438k 0 0:00:02 --:--:-- 0:00:02 1438k
100 3006k 100 3006k 0 0 1804k 0 0:00:01 0:00:01 --:--:-- 1805k
install for i386
* installing *source* package 'PureCN' ...
** using staged installation
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'PureCN'
finding HTML links ... done
PureCN-defunct html
PureCN-deprecated html
annotateTargets html
bootstrapResults html
calculateBamCoverageByInterval html
calculateLogRatio html
calculateMappingBiasGatk4 html
calculateMappingBiasVcf html
calculatePowerDetectSomatic html
calculateTangentNormal html
callAlterations html
callAlterationsFromSegmentation html
callAmplificationsInLowPurity html
callCIN html
callLOH html
callMutationBurden html
centromeres html
correctCoverageBias html
createCurationFile html
createNormalDatabase html
filterIntervals html
filterVcfBasic html
filterVcfMuTect html
filterVcfMuTect2 html
findFocal html
getSexFromCoverage html
getSexFromVcf html
plotAbs html
poolCoverage html
predictSomatic html
preprocessIntervals html
processMultipleSamples html
purecn.DNAcopy.bdry html
purecn.example.output html
readAllelicCountsFile html
readCoverageFile html
readCurationFile html
readIntervalFile html
readLogRatioFile html
readSegmentationFile html
runAbsoluteCN html
segmentationCBS html
segmentationGATK4 html
segmentationHclust html
segmentationPSCBS html
setMappingBiasVcf html
setPriorVcf html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'PureCN' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'PureCN' as PureCN_2.0.2.zip
* DONE (PureCN)
* installing to library 'C:/Users/biocbuild/bbs-3.14-bioc/R/library'
package 'PureCN' successfully unpacked and MD5 sums checked