| Back to Multiple platform build/check report for BioC 3.14 |
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This page was generated on 2022-04-13 12:06:58 -0400 (Wed, 13 Apr 2022).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 20.04.4 LTS) | x86_64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4324 |
| tokay2 | Windows Server 2012 R2 Standard | x64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4077 |
| machv2 | macOS 10.14.6 Mojave | x86_64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4137 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
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To the developers/maintainers of the MutationalPatterns package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/MutationalPatterns.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 1256/2083 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| MutationalPatterns 3.4.1 (landing page) Mark van Roosmalen
| nebbiolo2 | Linux (Ubuntu 20.04.4 LTS) / x86_64 | OK | OK | OK |  | ||||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | | ||||||||
| machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | | ||||||||
| Package: MutationalPatterns |
| Version: 3.4.1 |
| Command: C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/MutationalPatterns_3.4.1.tar.gz && rm -rf MutationalPatterns.buildbin-libdir && mkdir MutationalPatterns.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=MutationalPatterns.buildbin-libdir MutationalPatterns_3.4.1.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL MutationalPatterns_3.4.1.zip && rm MutationalPatterns_3.4.1.tar.gz MutationalPatterns_3.4.1.zip |
| StartedAt: 2022-04-12 06:57:17 -0400 (Tue, 12 Apr 2022) |
| EndedAt: 2022-04-12 07:00:09 -0400 (Tue, 12 Apr 2022) |
| EllapsedTime: 171.8 seconds |
| RetCode: 0 |
| Status: OK |
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### Running command:
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### C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/MutationalPatterns_3.4.1.tar.gz && rm -rf MutationalPatterns.buildbin-libdir && mkdir MutationalPatterns.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=MutationalPatterns.buildbin-libdir MutationalPatterns_3.4.1.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL MutationalPatterns_3.4.1.zip && rm MutationalPatterns_3.4.1.tar.gz MutationalPatterns_3.4.1.zip
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% Total % Received % Xferd Average Speed Time Time Time Current
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0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0
43 2124k 43 925k 0 0 1362k 0 0:00:01 --:--:-- 0:00:01 1362k
100 2124k 100 2124k 0 0 1709k 0 0:00:01 0:00:01 --:--:-- 1710k
install for i386
* installing *source* package 'MutationalPatterns' ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'MutationalPatterns'
finding HTML links ... done
MutationalPatterns-defunct html
MutationalPatterns-package html
bin_mutation_density html
binomial_test html
calculate_lesion_segregation html
cluster_signatures html
context_potential_damage_analysis html
convert_sigs_to_ref html
cos_sim html
cos_sim_matrix html
count_dbs_contexts html
count_indel_contexts html
count_mbs_contexts html
determine_regional_similarity html
enrichment_depletion_test html
extract_signatures html
fit_to_signatures html
fit_to_signatures_bootstrapped html
fit_to_signatures_strict html
genomic_distribution html
get_dbs_context html
get_indel_context html
get_known_signatures html
get_mut_type html
get_sim_tb html
lengthen_mut_matrix html
merge_signatures html
mut_192_occurrences html
mut_96_occurrences html
mut_context html
mut_matrix html
mut_matrix_stranded html
mut_strand html
mut_type html
mut_type_occurrences html
mutations_from_vcf html
plot_192_profile html
plot_96_profile html
plot_bootstrapped_contribution html
plot_compare_dbs html
plot_compare_indels html
plot_compare_mbs html
plot_compare_profiles html
plot_contribution html
plot_contribution_heatmap html
plot_correlation_bootstrap html
plot_cosine_heatmap html
plot_dbs_contexts html
plot_enrichment_depletion html
plot_indel_contexts html
plot_lesion_segregation html
plot_main_dbs_contexts html
plot_main_indel_contexts html
plot_mbs_contexts html
plot_original_vs_reconstructed html
plot_profile_heatmap html
plot_profile_region html
plot_rainfall html
plot_regional_similarity html
plot_river html
plot_signature_strand_bias html
plot_spectrum html
plot_spectrum_region html
plot_strand html
plot_strand_bias html
pool_mut_mat html
read_vcfs_as_granges html
region_cossim-class html
rename_nmf_signatures html
show-region_cossim-method html
signature_potential_damage_analysis html
split_muts_region html
strand_bias_test html
strand_occurrences html
type_context html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'MutationalPatterns' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'MutationalPatterns' as MutationalPatterns_3.4.1.zip
* DONE (MutationalPatterns)
* installing to library 'C:/Users/biocbuild/bbs-3.14-bioc/R/library'
package 'MutationalPatterns' successfully unpacked and MD5 sums checked