Back to Multiple platform build/check report for BioC 3.14 |
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This page was generated on 2022-04-13 12:06:54 -0400 (Wed, 13 Apr 2022).
Hostname | OS | Arch (*) | R version | Installed pkgs |
---|---|---|---|---|
nebbiolo2 | Linux (Ubuntu 20.04.4 LTS) | x86_64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4324 |
tokay2 | Windows Server 2012 R2 Standard | x64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4077 |
machv2 | macOS 10.14.6 Mojave | x86_64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4137 |
Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X |
To the developers/maintainers of the MinimumDistance package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/MinimumDistance.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
Package 1157/2083 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
MinimumDistance 1.38.0 (landing page) Robert Scharpf
| nebbiolo2 | Linux (Ubuntu 20.04.4 LTS) / x86_64 | OK | OK | WARNINGS | |||||||||
tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | WARNINGS | OK | |||||||||
machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | WARNINGS | OK | |||||||||
Package: MinimumDistance |
Version: 1.38.0 |
Command: C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/MinimumDistance_1.38.0.tar.gz && rm -rf MinimumDistance.buildbin-libdir && mkdir MinimumDistance.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=MinimumDistance.buildbin-libdir MinimumDistance_1.38.0.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL MinimumDistance_1.38.0.zip && rm MinimumDistance_1.38.0.tar.gz MinimumDistance_1.38.0.zip |
StartedAt: 2022-04-12 07:01:35 -0400 (Tue, 12 Apr 2022) |
EndedAt: 2022-04-12 07:04:12 -0400 (Tue, 12 Apr 2022) |
EllapsedTime: 156.8 seconds |
RetCode: 0 |
Status: OK |
############################################################################## ############################################################################## ### ### Running command: ### ### C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/MinimumDistance_1.38.0.tar.gz && rm -rf MinimumDistance.buildbin-libdir && mkdir MinimumDistance.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=MinimumDistance.buildbin-libdir MinimumDistance_1.38.0.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL MinimumDistance_1.38.0.zip && rm MinimumDistance_1.38.0.tar.gz MinimumDistance_1.38.0.zip ### ############################################################################## ############################################################################## % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 44 938k 44 416k 0 0 584k 0 0:00:01 --:--:-- 0:00:01 584k 100 938k 100 938k 0 0 787k 0 0:00:01 0:00:01 --:--:-- 788k install for i386 * installing *source* package 'MinimumDistance' ... ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading No methods found in package 'oligoClasses' for request: 'mean' when loading 'crlmm' Warning: replacing previous import 'ff::pattern' by 'grid::pattern' when loading 'MinimumDistance' Creating a new generic function for 'allNames' in package 'MinimumDistance' in method for 'coerce' with signature '"RangedDataCNV","GRanges"': no definition for class "RangedDataCNV" in method for 'todf' with signature 'object="TrioSet",rangeData="RangedData"': no definition for class "RangedData" in method for 'prune' with signature 'object="TrioSet",ranges="RangedDataCNV"': no definition for class "RangedDataCNV" in method for 'prune' with signature 'object="TrioSetList",ranges="RangedDataCNV"': no definition for class "RangedDataCNV" ** help *** installing help indices converting help for package 'MinimumDistance' finding HTML links ... done DNAcopyParam html Defunct html Deprecated html FilterParamMD-class html FilterParamMD html MAP html MAP2 html MDRanges-class html MinDistExperiment-class html MinDistExperiment html MinDistGRanges-class html MinDistGRanges html MinDistParam-class html MinDistParam html MinDistPosterior-class html MinimumDistance html ParentOffspring-class html ParentOffspringList-class html Pedigree-class html Pedigree html REDIRECT:topic Previous alias or file overwritten by alias: C:/Users/biocbuild/bbs-3.14-bioc/meat/MinimumDistance.buildbin-libdir/00LOCK-MinimumDistance/00new/MinimumDistance/help/Pedigree.html PennParam html TrioSet-class html TrioSet html TrioSetList-class html TrioSetList html TrioSetListLD html acf2 html calculateMindist html coercion-methods html denovo html exampleTrioSetList html REDIRECT:topic Previous alias or file overwritten by alias: C:/Users/biocbuild/bbs-3.14-bioc/meat/MinimumDistance.buildbin-libdir/00LOCK-MinimumDistance/00new/MinimumDistance/help/trioSetList.html filterExperiment html mad2 html mdLegend html md_exp html md_gr html mindist html nMAD html pedigreeGrid html pedigreeName html pedigreeViewports html plotDenovo html range-ILimit-method html segment2 html finding level-2 HTML links ... done ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location No methods found in package 'oligoClasses' for request: 'mean' when loading 'crlmm' Warning: replacing previous import 'ff::pattern' by 'grid::pattern' when loading 'MinimumDistance' ** testing if installed package can be loaded from final location No methods found in package 'oligoClasses' for request: 'mean' when loading 'crlmm' Warning: replacing previous import 'ff::pattern' by 'grid::pattern' when loading 'MinimumDistance' ** testing if installed package keeps a record of temporary installation path install for x64 * installing *source* package 'MinimumDistance' ... ** testing if installed package can be loaded No methods found in package 'oligoClasses' for request: 'mean' when loading 'crlmm' Warning: replacing previous import 'ff::pattern' by 'grid::pattern' when loading 'MinimumDistance' * MD5 sums packaged installation of 'MinimumDistance' as MinimumDistance_1.38.0.zip * DONE (MinimumDistance) * installing to library 'C:/Users/biocbuild/bbs-3.14-bioc/R/library' package 'MinimumDistance' successfully unpacked and MD5 sums checked