Laurent Gatto
| Snapshot Date: 2022-04-12 01:55:07 -0400 (Tue, 12 Apr 2022) |
| git_url: https://git.bioconductor.org/packages/MSnbase |
| git_branch: RELEASE_3_14 |
| git_last_commit: c86ac8b |
| git_last_commit_date: 2022-01-13 12:09:21 -0400 (Thu, 13 Jan 2022) |
| Back to Multiple platform build/check report for BioC 3.14 |
|
This page was generated on 2022-04-13 12:06:57 -0400 (Wed, 13 Apr 2022).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 20.04.4 LTS) | x86_64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4324 |
| tokay2 | Windows Server 2012 R2 Standard | x64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4077 |
| machv2 | macOS 10.14.6 Mojave | x86_64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4137 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
|
To the developers/maintainers of the MSnbase package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/MSnbase.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 1222/2083 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| MSnbase 2.20.4 (landing page) Laurent Gatto
| nebbiolo2 | Linux (Ubuntu 20.04.4 LTS) / x86_64 | OK | OK | OK | | ||||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | ERROR | OK | |||||||||
| machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | ERROR | OK | |||||||||
| Package: MSnbase |
| Version: 2.20.4 |
| Command: C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:MSnbase.install-out.txt --library=C:\Users\biocbuild\bbs-3.14-bioc\R\library --no-vignettes --timings MSnbase_2.20.4.tar.gz |
| StartedAt: 2022-04-12 23:19:53 -0400 (Tue, 12 Apr 2022) |
| EndedAt: 2022-04-12 23:59:27 -0400 (Tue, 12 Apr 2022) |
| EllapsedTime: 2374.1 seconds |
| RetCode: 1 |
| Status: ERROR |
| CheckDir: MSnbase.Rcheck |
| Warnings: NA |
##############################################################################
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###
### Running command:
###
### C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:MSnbase.install-out.txt --library=C:\Users\biocbuild\bbs-3.14-bioc\R\library --no-vignettes --timings MSnbase_2.20.4.tar.gz
###
##############################################################################
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* using log directory 'C:/Users/biocbuild/bbs-3.14-bioc/meat/MSnbase.Rcheck'
* using R version 4.1.3 (2022-03-10)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'MSnbase/DESCRIPTION' ... OK
* this is package 'MSnbase' version '2.20.4'
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'MSnbase' can be installed ... OK
* checking installed package size ... NOTE
installed size is 9.2Mb
sub-directories of 1Mb or more:
R 1.8Mb
data 1.9Mb
help 1.9Mb
libs 2.0Mb
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... NOTE
Authors@R field gives more than one person with maintainer role:
Laurent Gatto <laurent.gatto@uclouvain.be> [aut, cre] (<https://orcid.org/0000-0002-1520-2268>)
Johannes Rainer <Johannes.Rainer@eurac.edu> [aut, cre] (<https://orcid.org/0000-0002-6977-7147>)
Sebastian Gibb <mail@sebastiangibb.de> [aut, cre]
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... NOTE
':::' calls which should be '::':
'S4Vectors:::makeClassinfoRowForCompactPrinting'
'S4Vectors:::makePrettyMatrixForCompactPrinting'
See the note in ?`:::` about the use of this operator.
Unexported objects imported by ':::' calls:
'Biobase:::.showAnnotatedDataFrame' 'MALDIquant:::.estimateNoise'
'MALDIquant:::.localMaxima' 'MALDIquant:::.movingAverage'
'MALDIquant:::.savitzkyGolay' 'mzR:::.hasChromatograms'
'mzR:::.hasSpectra'
See the note in ?`:::` about the use of this operator.
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking LazyData ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking compiled code ... NOTE
Note: information on .o files for i386 is not available
Note: information on .o files for x64 is not available
File 'C:/Users/biocbuild/bbs-3.14-bioc/R/library/MSnbase/libs/i386/MSnbase.dll':
Found 'abort', possibly from 'abort' (C), 'runtime' (Fortran)
Found 'exit', possibly from 'exit' (C), 'stop' (Fortran)
Found 'printf', possibly from 'printf' (C)
File 'C:/Users/biocbuild/bbs-3.14-bioc/R/library/MSnbase/libs/x64/MSnbase.dll':
Found 'abort', possibly from 'abort' (C), 'runtime' (Fortran)
Found 'exit', possibly from 'exit' (C), 'stop' (Fortran)
Found 'printf', possibly from 'printf' (C)
Compiled code should not call entry points which might terminate R nor
write to stdout/stderr instead of to the console, nor use Fortran I/O
nor system RNGs. The detected symbols are linked into the code but
might come from libraries and not actually be called.
See 'Writing portable packages' in the 'Writing R Extensions' manual.
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
Examples with CPU (user + system) or elapsed time > 5s
user system elapsed
chromatogram-MSnExp-method 8.33 1.15 9.48
MSnSet-class 7.75 0.30 8.08
OnDiskMSnExp-class 7.45 0.35 9.90
estimateMzResolution 6.86 0.79 8.11
readMzTabData 6.97 0.05 7.14
averageMSnSet 5.64 0.25 6.47
MzTab-class 5.22 0.20 7.49
combineSpectra 4.39 0.07 7.91
extractSpectraData 2.74 0.25 18.25
navMS 2.22 0.06 6.00
** running examples for arch 'x64' ... OK
Examples with CPU (user + system) or elapsed time > 5s
user system elapsed
chromatogram-MSnExp-method 11.21 0.22 11.44
OnDiskMSnExp-class 9.67 0.16 9.87
MSnSet-class 7.37 0.05 7.42
estimateMzResolution 6.72 0.34 7.03
readMzTabData 5.45 0.06 5.64
averageMSnSet 5.28 0.22 5.95
* checking for unstated dependencies in 'tests' ... OK
* checking tests ...
** running tests for arch 'i386' ...
Running 'testthat.R'
ERROR
Running the tests in 'tests/testthat.R' failed.
Last 13 lines of output:
== Failed tests ================================================================
-- Error (test_MSmap.R:8:1): (code run outside of `test_that()`) ---------------
Error: Can not open file C:\Users\biocbuild\AppData\Local/R/cache/R/rpx/c80c2654c33_TMT_Erwinia_1uLSike_Top10HCD_isol2_45stepped_60min_01-20141210.mzML! Original error was: Error in pwizModule$open(filename): [SpectrumList_mzML::create()] Bad istream.
Backtrace:
x
1. \-mzR::openMSfile(f) at test_MSmap.R:8:0
2. \-base::tryCatch(...)
3. \-base tryCatchList(expr, classes, parentenv, handlers)
4. \-base tryCatchOne(expr, names, parentenv, handlers[[1L]])
5. \-value[[3L]](cond)
[ FAIL 1 | WARN 1092 | SKIP 12 | PASS 2362 ]
Error: Test failures
Execution halted
** running tests for arch 'x64' ...
Running 'testthat.R'
ERROR
Running the tests in 'tests/testthat.R' failed.
Last 13 lines of output:
== Failed tests ================================================================
-- Error (test_MSmap.R:8:1): (code run outside of `test_that()`) ---------------
Error: Can not open file C:\Users\biocbuild\AppData\Local/R/cache/R/rpx/c80c2654c33_TMT_Erwinia_1uLSike_Top10HCD_isol2_45stepped_60min_01-20141210.mzML! Original error was: Error in pwizModule$open(filename): [SpectrumList_mzML::create()] Bad istream.
Backtrace:
x
1. \-mzR::openMSfile(f) at test_MSmap.R:8:0
2. \-base::tryCatch(...)
3. \-base tryCatchList(expr, classes, parentenv, handlers)
4. \-base tryCatchOne(expr, names, parentenv, handlers[[1L]])
5. \-value[[3L]](cond)
[ FAIL 1 | WARN 1092 | SKIP 12 | PASS 2362 ]
Error: Test failures
Execution halted
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: 2 ERRORs, 4 NOTEs
See
'C:/Users/biocbuild/bbs-3.14-bioc/meat/MSnbase.Rcheck/00check.log'
for details.
MSnbase.Rcheck/00install.out
##############################################################################
##############################################################################
###
### Running command:
###
### C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/MSnbase_2.20.4.tar.gz && rm -rf MSnbase.buildbin-libdir && mkdir MSnbase.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=MSnbase.buildbin-libdir MSnbase_2.20.4.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL MSnbase_2.20.4.zip && rm MSnbase_2.20.4.tar.gz MSnbase_2.20.4.zip
###
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% Total % Received % Xferd Average Speed Time Time Time Current
Dload Upload Total Spent Left Speed
0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0
27 1790k 27 498k 0 0 1026k 0 0:00:01 --:--:-- 0:00:01 1027k
100 1790k 100 1790k 0 0 1509k 0 0:00:01 0:00:01 --:--:-- 1510k
install for i386
* installing *source* package 'MSnbase' ...
** using staged installation
** libs
"C:/rtools40/mingw32/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/Rcpp/include' -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c RcppExports.cpp -o RcppExports.o
"C:/rtools40/mingw32/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/Rcpp/include' -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c Spectrum1_class.c -o Spectrum1_class.o
Spectrum1_class.c:8:13: warning: '_new_Spectrum1' defined but not used [-Wunused-function]
static SEXP _new_Spectrum1(SEXP msLevel, SEXP peaksCount, SEXP rt,
^~~~~~~~~~~~~~
"C:/rtools40/mingw32/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/Rcpp/include' -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c Spectrum2_class.c -o Spectrum2_class.o
Spectrum2_class.c:9:13: warning: '_new_Spectrum2' defined but not used [-Wunused-function]
static SEXP _new_Spectrum2(SEXP msLevel, SEXP peaksCount, SEXP rt,
^~~~~~~~~~~~~~
"C:/rtools40/mingw32/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/Rcpp/include' -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c imp_neighbour_avg.cpp -o imp_neighbour_avg.o
"C:/rtools40/mingw32/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/Rcpp/include' -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c utils.c -o utils.o
utils.c: In function 'compar_double_dd_for_stable_asc_order':
utils.c:92:15: warning: unused variable 'ret' [-Wunused-variable]
int i1, i2, ret;
^~~
utils.c: In function 'compar_double_dd_for_stable_desc_order':
utils.c:107:15: warning: unused variable 'ret' [-Wunused-variable]
int i1, i2, ret;
^~~
utils.c: In function 'compar_double_asc_order':
utils.c:123:18: warning: unused variable 'ret' [-Wunused-variable]
double d1, d2, ret;
^~~
utils.c: In function 'compar_double_desc_order':
utils.c:133:18: warning: unused variable 'ret' [-Wunused-variable]
double d1, d2, ret;
^~~
At top level:
utils.c:131:12: warning: 'compar_double_desc_order' defined but not used [-Wunused-function]
static int compar_double_desc_order(const void *p1, const void *p2)
^~~~~~~~~~~~~~~~~~~~~~~~
utils.c:121:12: warning: 'compar_double_asc_order' defined but not used [-Wunused-function]
static int compar_double_asc_order(const void *p1, const void *p2)
^~~~~~~~~~~~~~~~~~~~~~~
C:/rtools40/mingw32/bin/g++ -std=gnu++11 -shared -s -static-libgcc -o MSnbase.dll tmp.def RcppExports.o Spectrum1_class.o Spectrum2_class.o imp_neighbour_avg.o utils.o -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.14-/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.14-bioc/meat/MSnbase.buildbin-libdir/00LOCK-MSnbase/00new/MSnbase/libs/i386
** R
** data
*** moving datasets to lazyload DB
Creating a new generic function for 'trimws' in package 'MSnbase'
in method for 'coerce' with signature '"MSnSet","SummarizedExperiment"': no definition for class "SummarizedExperiment"
in method for 'coerce' with signature '"SummarizedExperiment","MSnSet"': no definition for class "SummarizedExperiment"
in method for 'coerce' with signature '"IBSpectra","MSnSet"': no definition for class "IBSpectra"
** inst
** byte-compile and prepare package for lazy loading
Creating a new generic function for 'trimws' in package 'MSnbase'
in method for 'coerce' with signature '"MSnSet","SummarizedExperiment"': no definition for class "SummarizedExperiment"
in method for 'coerce' with signature '"SummarizedExperiment","MSnSet"': no definition for class "SummarizedExperiment"
in method for 'coerce' with signature '"IBSpectra","MSnSet"': no definition for class "IBSpectra"
** help
*** installing help indices
converting help for package 'MSnbase'
finding HTML links ... done
Chromatogram-class html
finding level-2 HTML links ... done
FeatComp-class html
FeaturesOfInterest-class html
MChromatograms-class html
MIAPE-class html
MSmap-class html
REDIRECT:topic Previous alias or file overwritten by alias: C:/Users/biocbuild/bbs-3.14-bioc/meat/MSnbase.buildbin-libdir/00LOCK-MSnbase/00new/MSnbase/help/msMap.html
MSnExp-class html
MSnProcess-class html
MSnSet-class html
MSnSetList-class html
MSnbaseOptions html
MSpectra html
MzTab-class html
OnDiskMSnExp-class html
ProcessingStep-class html
ReporterIons-class html
Spectrum-class html
Spectrum1-class html
Spectrum2-class html
TMT6 html
addIdentificationData-methods html
aggvar html
averageMSnSet html
bin-methods html
calculateFragments-methods html
chromatogram-MSnExp-method html
REDIRECT:topic Previous alias or file overwritten by alias: C:/Users/biocbuild/bbs-3.14-bioc/meat/MSnbase.buildbin-libdir/00LOCK-MSnbase/00new/MSnbase/help/chromatogram.html
clean-methods html
combineFeatures html
combineSpectra html
combineSpectraMovingWindow html
commonFeatureNames html
compareMSnSets html
compareSpectra-methods html
consensusSpectrum html
defunct html
estimateMzResolution html
estimateMzScattering html
estimateNoise-method html
extractPrecSpectra-methods html
extractSpectraData html
fData-utils html
factorsAsStrings html
featureCV html
fillUp html
filterIdentificationDataFrame html
formatRt html
get.amino.acids html
get.atomic.mass html
getVariableName html
grepEcols html
hasSpectraOrChromatograms html
iPQF html
iTRAQ4 html
imageNA2 html
impute html
isCentroidedFromFile html
itraqdata html
REDIRECT:topic Previous alias or file overwritten by alias: C:/Users/biocbuild/bbs-3.14-bioc/meat/MSnbase.buildbin-libdir/00LOCK-MSnbase/00new/MSnbase/help/msnset.html
listOf html
makeCamelCase html
makeNaData html
meanMzInts html
missing-data html
mzRident2dfr html
nFeatures html
nQuants html
naplot html
navMS html
normToReference html
normalise-methods html
npcv html
pSet-class html
pickPeaks-method html
plot-methods html
plot2d-methods html
plotDensity-methods html
plotMzDelta-methods html
plotNA-methods html
plotSpectrumSpectrum-methods html
precSelection html
purityCorrect-methods html
quantify-methods html
readMSData html
readMSnSet html
readMgfData html
readMzIdData html
readMzTabData html
readMzTabData_v0.9 html
readSRMData html
reduce-data.frame-method html
removeNoId-methods html
removePeaks-methods html
removeReporters-methods html
selectFeatureData html
smooth-methods html
trimMz-methods html
updateObject-methods html
writeMSData html
writeMgfData-methods html
writeMzTabData html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'MSnbase' ...
** libs
"C:/rtools40/mingw64/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/Rcpp/include' -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c RcppExports.cpp -o RcppExports.o
"C:/rtools40/mingw64/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/Rcpp/include' -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c Spectrum1_class.c -o Spectrum1_class.o
Spectrum1_class.c:8:13: warning: '_new_Spectrum1' defined but not used [-Wunused-function]
static SEXP _new_Spectrum1(SEXP msLevel, SEXP peaksCount, SEXP rt,
^~~~~~~~~~~~~~
"C:/rtools40/mingw64/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/Rcpp/include' -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c Spectrum2_class.c -o Spectrum2_class.o
Spectrum2_class.c:9:13: warning: '_new_Spectrum2' defined but not used [-Wunused-function]
static SEXP _new_Spectrum2(SEXP msLevel, SEXP peaksCount, SEXP rt,
^~~~~~~~~~~~~~
"C:/rtools40/mingw64/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/Rcpp/include' -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c imp_neighbour_avg.cpp -o imp_neighbour_avg.o
"C:/rtools40/mingw64/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/Rcpp/include' -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c utils.c -o utils.o
utils.c: In function 'compar_double_dd_for_stable_asc_order':
utils.c:92:15: warning: unused variable 'ret' [-Wunused-variable]
int i1, i2, ret;
^~~
utils.c: In function 'compar_double_dd_for_stable_desc_order':
utils.c:107:15: warning: unused variable 'ret' [-Wunused-variable]
int i1, i2, ret;
^~~
utils.c: In function 'compar_double_asc_order':
utils.c:123:18: warning: unused variable 'ret' [-Wunused-variable]
double d1, d2, ret;
^~~
utils.c: In function 'compar_double_desc_order':
utils.c:133:18: warning: unused variable 'ret' [-Wunused-variable]
double d1, d2, ret;
^~~
At top level:
utils.c:131:12: warning: 'compar_double_desc_order' defined but not used [-Wunused-function]
static int compar_double_desc_order(const void *p1, const void *p2)
^~~~~~~~~~~~~~~~~~~~~~~~
utils.c:121:12: warning: 'compar_double_asc_order' defined but not used [-Wunused-function]
static int compar_double_asc_order(const void *p1, const void *p2)
^~~~~~~~~~~~~~~~~~~~~~~
C:/rtools40/mingw64/bin/g++ -std=gnu++11 -shared -s -static-libgcc -o MSnbase.dll tmp.def RcppExports.o Spectrum1_class.o Spectrum2_class.o imp_neighbour_avg.o utils.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.14-/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.14-bioc/meat/MSnbase.buildbin-libdir/MSnbase/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'MSnbase' as MSnbase_2.20.4.zip
* DONE (MSnbase)
* installing to library 'C:/Users/biocbuild/bbs-3.14-bioc/R/library'
package 'MSnbase' successfully unpacked and MD5 sums checked
|
MSnbase.Rcheck/tests_i386/testthat.Rout.fail
R version 4.1.3 (2022-03-10) -- "One Push-Up"
Copyright (C) 2022 The R Foundation for Statistical Computing
Platform: i386-w64-mingw32/i386 (32-bit)
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> # setting R_TESTS to empty string because of
> # https://github.com/hadley/testthat/issues/144
> # revert this when that issue in R is fixed.
> Sys.setenv("R_TESTS" = "")
> library("testthat")
> library("MSnbase")
Loading required package: BiocGenerics
Attaching package: 'BiocGenerics'
The following objects are masked from 'package:stats':
IQR, mad, sd, var, xtabs
The following objects are masked from 'package:base':
Filter, Find, Map, Position, Reduce, anyDuplicated, append,
as.data.frame, basename, cbind, colnames, dirname, do.call,
duplicated, eval, evalq, get, grep, grepl, intersect, is.unsorted,
lapply, mapply, match, mget, order, paste, pmax, pmax.int, pmin,
pmin.int, rank, rbind, rownames, sapply, setdiff, sort, table,
tapply, union, unique, unsplit, which.max, which.min
Loading required package: Biobase
Welcome to Bioconductor
Vignettes contain introductory material; view with
'browseVignettes()'. To cite Bioconductor, see
'citation("Biobase")', and for packages 'citation("pkgname")'.
Loading required package: mzR
Loading required package: Rcpp
Loading required package: S4Vectors
Loading required package: stats4
Attaching package: 'S4Vectors'
The following objects are masked from 'package:base':
I, expand.grid, unname
Loading required package: ProtGenerics
Attaching package: 'ProtGenerics'
The following object is masked from 'package:stats':
smooth
This is MSnbase version 2.20.4
Visit https://lgatto.github.io/MSnbase/ to get started.
Attaching package: 'MSnbase'
The following object is masked from 'package:base':
trimws
> setMSnbaseVerbose(FALSE)
> ## register(SerialParam()) ## see issue 205
>
> ## Erwinia
> f <- msdata::proteomics(full.names = TRUE,
+ pattern = "TMT_Erwinia_1uLSike_Top10HCD_isol2_45stepped_60min_01.mzML.gz")
> tmt_erwinia_in_mem_ms1 <- readMSData(f, msLevel = 1)
> tmt_erwinia_in_mem_ms2 <- readMSData(f, msLevel = 2)
> tmt_erwinia_on_disk <- readMSData(f, mode = "onDisk")
> tmt_erwinia_on_disk_ms1 <- readMSData(f, msLevel = 1, mode = "onDisk")
> tmt_erwinia_on_disk_ms2 <- readMSData(f, msLevel = 2, mode = "onDisk")
> ## subset by rt
> tmt_im_ms1_sub <- filterRt(tmt_erwinia_in_mem_ms1, c(1200, 1250))
> tmt_im_ms2_sub <- filterRt(tmt_erwinia_in_mem_ms2, c(1200, 1250))
> tmt_od_sub <- filterRt(tmt_erwinia_on_disk, c(1200, 1250))
> tmt_od_ms1_sub <- filterRt(tmt_erwinia_on_disk_ms1, c(1200, 1250))
> tmt_od_ms2_sub <- filterRt(tmt_erwinia_on_disk_ms2, c(1200, 1250))
>
> ## microtofq
> f <- c(system.file("microtofq/MM14.mzML", package = "msdata"),
+ system.file("microtofq/MM8.mzML", package = "msdata"))
> microtofq_in_mem_ms1 <- readMSData(f, msLevel = 1)
> microtofq_on_disk_ms1 <- readMSData(f, msLevel = 1, mode = "onDisk")
> microtofq_on_disk <- readMSData(f, mode = "onDisk")
>
> ## extdata mzML
> f <- dir(system.file(package = "MSnbase", dir = "extdata"),
+ full.name = TRUE, pattern = "mzXML$")
> extdata_mzXML_in_mem_ms2 <- readMSData(f, verbose = FALSE, centroided. = FALSE)
> extdata_mzXML_on_disk <- readMSData(f, centroided. = FALSE, mode = "onDisk")
> extdata_mzXML_on_disk_ms2 <- readMSData(f, msLevel = 2, centroided. = FALSE, mode = "onDisk")
>
> sf <- dir(system.file("sciex", package = "msdata"), full.names = TRUE)
> sciex <- readMSData(sf, mode = "onDisk")
>
> test_check("MSnbase")
Experiment data
Experimenter name: Laurent Gatto
Laboratory: Cambridge Centre for Proteomics (CCP)
Contact information: Laurent Gatto
Contact email: lg390@cam.ac.uk
Title: Example 'MSnExp' data set
URL:
PMIDs:
No abstract available.
Instrument :
Model: test (1)
Manufacturer:
Customisations:
Use 'msInfo(object)' for more MIAPE-MS information.
Experiment data
Experimenter name: Laurent Gatto
Laboratory: Cambridge Centre for Proteomics (CCP)
Contact information: Laurent Gatto
Contact email: lg390@cam.ac.uk
Title: Example 'MSnExp' data set
URL:
PMIDs:
No abstract available.
notes:
Note1:
First note
MIAPE-MS information:
1. General features:
Date stamp:
Contact: Laurent Gatto
Name: Laurent Gatto
Laboratory: Cambridge Centre for Proteomics (CCP)
Instument model: test
Manufacturer:
Customisations:
Software:
Version:
Switching:
Param file:
2. Ion source
Source:
Source details:
3. Post-source componentry
Analyzer:
Analyzer details:
Collision gas:
Pressure: bars
Energy:
Detector type:
Sensitivity:
Error in x$.self$finalize() : attempt to apply non-function
Error in x$.self$finalize() : attempt to apply non-function
Error in x$.self$finalize() : attempt to apply non-function
Error in x$.self$finalize() : attempt to apply non-function
Object of class "MzTab".
Description: mzTab example file for reporting a summary report of
quantification data quantified on the protein level
Mode: Complete
Type: Quantification
Available data: Proteins PSMs
Object of class "MzTab".
Description:
Mode:
Type:
Available data: SmallMolecules
Object of class "MzTab".
Description:
Mode:
Type:
Available data: SmallMolecules
Instance of class 'MSnSetList' containig 3 objects.
MSn experiment data ("OnDiskMSnExp")
Object size in memory: 0.22 Mb
- - - Spectra data - - -
MS level(s): 1 2
Number of spectra: 509
MSn retention times: 18:28 - 22:03 minutes
- - - Processing information - - -
Data loaded [Tue Apr 12 23:29:05 2022]
MSnbase version: 2.20.4
- - - Meta data - - -
phenoData
rowNames:
TMT_Erwinia_1uLSike_Top10HCD_isol2_45stepped_60min_01.mzML.gz
varLabels: sampleNames
varMetadata: labelDescription
Loaded from:
TMT_Erwinia_1uLSike_Top10HCD_isol2_45stepped_60min_01.mzML.gz
protocolData: none
featureData
featureNames: F1.S001 F1.S002 ... F1.S509 (509 total)
fvarLabels: fileIdx spIdx ... spectrum (35 total)
fvarMetadata: labelDescription
experimentData: use 'experimentData(object)'
Object of class "ReporterIons"
TMT10HCD: '10-plex TMT HCD' with 10 reporter ions
- [126] 126.1277 +/- 0.002 (#8DD3C7)
- [127N] 127.1248 +/- 0.002 (#FFFFB3)
- [127C] 127.1311 +/- 0.002 (#BEBADA)
- [128N] 128.1281 +/- 0.002 (#FB8072)
- [128C] 128.1344 +/- 0.002 (#80B1D3)
- [129N] 129.1315 +/- 0.002 (#FDB462)
- [129C] 129.1378 +/- 0.002 (#B3DE69)
- [130N] 130.1348 +/- 0.002 (#FCCDE5)
- [130C] 130.1411 +/- 0.002 (#D9D9D9)
- [131] 131.1382 +/- 0.002 (#BC80BD)
Object of class "Spectrum1"
Retention time: 0:00
MSn level: 1
Total ion count: 684
Polarity: 1
MSn experiment data ("MSnExp")
Object size in memory: 0.17 Mb
- - - Spectra data - - -
MS level(s): 2
Number of spectra: 5
MSn retention times: 25:01 - 25:02 minutes
- - - Processing information - - -
Data loaded: Tue Apr 12 23:37:59 2022
MSnbase version: 2.20.4
- - - Meta data - - -
phenoData
rowNames: dummyiTRAQ.mzXML
varLabels: sampleNames
varMetadata: labelDescription
Loaded from:
dummyiTRAQ.mzXML
protocolData: none
featureData
featureNames: F1.S1 F1.S2 ... F1.S5 (5 total)
fvarLabels: spectrum
fvarMetadata: labelDescription
experimentData: use 'experimentData(object)'
MSn experiment data ("MSnExp")
Object size in memory: 0.19 Mb
- - - Spectra data - - -
MS level(s): 2
Number of spectra: 5
MSn retention times: 25:01 - 25:02 minutes
- - - Processing information - - -
Data loaded: Tue Apr 12 23:38:00 2022
MSnbase version: 2.20.4
- - - Meta data - - -
phenoData
rowNames: dummyiTRAQ.mzXML
varLabels: sampleNames
varMetadata: labelDescription
Loaded from:
dummyiTRAQ.mzXML
protocolData: none
featureData
featureNames: F1.S1 F1.S2 ... F1.S5 (5 total)
fvarLabels: spectrum
fvarMetadata: labelDescription
experimentData: use 'experimentData(object)'
Object of class "FeaturesOfInterest"
Created on Tue Apr 12 23:38:20 2022
Description:
small foi
3 features of interest:
P20353, P53501, Q7KU78
Traceable object of class "FeaturesOfInterest"
Created on Tue Apr 12 23:38:20 2022
Description:
my description
10 features of interest:
P20353, P53501 ... Q9VCK0, Q9VIU7
A collection of 1 features of interest.
A collection of 10 features of interest.
MSpectra with 3 spectra and 1 metadata column(s):
msLevel rtime peaksCount | id
1 2 NA 3 | 1
2 2 1.23245 4 | 2
3 1 1.23245 5 | 3
MSpectra with 3 spectra and 1 metadata column(s):
msLevel rtime peaksCount | id
<integer> <numeric> <integer> | <integer>
1 2 NA 3 | 1
2 2 1.23245 4 | 2
3 1 1.23245 5 | 3
MSpectra with 3 spectra and 1 metadata column(s):
msLevel rtime peaksCount | id
<integer> <numeric> <integer> | <integer>
1 2 NA 3 | 1
2 2 1.23245 4 | 2
3 1 1.23245 5 | 3
reading dummyiTRAQ.mzid... DONE!
There were 37 warnings (use warnings() to see them)
[ FAIL 1 | WARN 1092 | SKIP 12 | PASS 2362 ]
== Skipped tests ===============================================================
* empty test (12)
== Failed tests ================================================================
-- Error (test_MSmap.R:8:1): (code run outside of `test_that()`) ---------------
Error: Can not open file C:\Users\biocbuild\AppData\Local/R/cache/R/rpx/c80c2654c33_TMT_Erwinia_1uLSike_Top10HCD_isol2_45stepped_60min_01-20141210.mzML! Original error was: Error in pwizModule$open(filename): [SpectrumList_mzML::create()] Bad istream.
Backtrace:
x
1. \-mzR::openMSfile(f) at test_MSmap.R:8:0
2. \-base::tryCatch(...)
3. \-base tryCatchList(expr, classes, parentenv, handlers)
4. \-base tryCatchOne(expr, names, parentenv, handlers[[1L]])
5. \-value[[3L]](cond)
[ FAIL 1 | WARN 1092 | SKIP 12 | PASS 2362 ]
Error: Test failures
Execution halted
|
MSnbase.Rcheck/tests_x64/testthat.Rout.fail
R version 4.1.3 (2022-03-10) -- "One Push-Up"
Copyright (C) 2022 The R Foundation for Statistical Computing
Platform: x86_64-w64-mingw32/x64 (64-bit)
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> # setting R_TESTS to empty string because of
> # https://github.com/hadley/testthat/issues/144
> # revert this when that issue in R is fixed.
> Sys.setenv("R_TESTS" = "")
> library("testthat")
> library("MSnbase")
Loading required package: BiocGenerics
Attaching package: 'BiocGenerics'
The following objects are masked from 'package:stats':
IQR, mad, sd, var, xtabs
The following objects are masked from 'package:base':
Filter, Find, Map, Position, Reduce, anyDuplicated, append,
as.data.frame, basename, cbind, colnames, dirname, do.call,
duplicated, eval, evalq, get, grep, grepl, intersect, is.unsorted,
lapply, mapply, match, mget, order, paste, pmax, pmax.int, pmin,
pmin.int, rank, rbind, rownames, sapply, setdiff, sort, table,
tapply, union, unique, unsplit, which.max, which.min
Loading required package: Biobase
Welcome to Bioconductor
Vignettes contain introductory material; view with
'browseVignettes()'. To cite Bioconductor, see
'citation("Biobase")', and for packages 'citation("pkgname")'.
Loading required package: mzR
Loading required package: Rcpp
Loading required package: S4Vectors
Loading required package: stats4
Attaching package: 'S4Vectors'
The following objects are masked from 'package:base':
I, expand.grid, unname
Loading required package: ProtGenerics
Attaching package: 'ProtGenerics'
The following object is masked from 'package:stats':
smooth
This is MSnbase version 2.20.4
Visit https://lgatto.github.io/MSnbase/ to get started.
Attaching package: 'MSnbase'
The following object is masked from 'package:base':
trimws
> setMSnbaseVerbose(FALSE)
> ## register(SerialParam()) ## see issue 205
>
> ## Erwinia
> f <- msdata::proteomics(full.names = TRUE,
+ pattern = "TMT_Erwinia_1uLSike_Top10HCD_isol2_45stepped_60min_01.mzML.gz")
> tmt_erwinia_in_mem_ms1 <- readMSData(f, msLevel = 1)
> tmt_erwinia_in_mem_ms2 <- readMSData(f, msLevel = 2)
> tmt_erwinia_on_disk <- readMSData(f, mode = "onDisk")
> tmt_erwinia_on_disk_ms1 <- readMSData(f, msLevel = 1, mode = "onDisk")
> tmt_erwinia_on_disk_ms2 <- readMSData(f, msLevel = 2, mode = "onDisk")
> ## subset by rt
> tmt_im_ms1_sub <- filterRt(tmt_erwinia_in_mem_ms1, c(1200, 1250))
> tmt_im_ms2_sub <- filterRt(tmt_erwinia_in_mem_ms2, c(1200, 1250))
> tmt_od_sub <- filterRt(tmt_erwinia_on_disk, c(1200, 1250))
> tmt_od_ms1_sub <- filterRt(tmt_erwinia_on_disk_ms1, c(1200, 1250))
> tmt_od_ms2_sub <- filterRt(tmt_erwinia_on_disk_ms2, c(1200, 1250))
>
> ## microtofq
> f <- c(system.file("microtofq/MM14.mzML", package = "msdata"),
+ system.file("microtofq/MM8.mzML", package = "msdata"))
> microtofq_in_mem_ms1 <- readMSData(f, msLevel = 1)
> microtofq_on_disk_ms1 <- readMSData(f, msLevel = 1, mode = "onDisk")
> microtofq_on_disk <- readMSData(f, mode = "onDisk")
>
> ## extdata mzML
> f <- dir(system.file(package = "MSnbase", dir = "extdata"),
+ full.name = TRUE, pattern = "mzXML$")
> extdata_mzXML_in_mem_ms2 <- readMSData(f, verbose = FALSE, centroided. = FALSE)
> extdata_mzXML_on_disk <- readMSData(f, centroided. = FALSE, mode = "onDisk")
> extdata_mzXML_on_disk_ms2 <- readMSData(f, msLevel = 2, centroided. = FALSE, mode = "onDisk")
>
> sf <- dir(system.file("sciex", package = "msdata"), full.names = TRUE)
> sciex <- readMSData(sf, mode = "onDisk")
>
> test_check("MSnbase")
Experiment data
Experimenter name: Laurent Gatto
Laboratory: Cambridge Centre for Proteomics (CCP)
Contact information: Laurent Gatto
Contact email: lg390@cam.ac.uk
Title: Example 'MSnExp' data set
URL:
PMIDs:
No abstract available.
Instrument :
Model: test (1)
Manufacturer:
Customisations:
Use 'msInfo(object)' for more MIAPE-MS information.
Experiment data
Experimenter name: Laurent Gatto
Laboratory: Cambridge Centre for Proteomics (CCP)
Contact information: Laurent Gatto
Contact email: lg390@cam.ac.uk
Title: Example 'MSnExp' data set
URL:
PMIDs:
No abstract available.
notes:
Note1:
First note
MIAPE-MS information:
1. General features:
Date stamp:
Contact: Laurent Gatto
Name: Laurent Gatto
Laboratory: Cambridge Centre for Proteomics (CCP)
Instument model: test
Manufacturer:
Customisations:
Software:
Version:
Switching:
Param file:
2. Ion source
Source:
Source details:
3. Post-source componentry
Analyzer:
Analyzer details:
Collision gas:
Pressure: bars
Energy:
Detector type:
Sensitivity:
Object of class "MzTab".
Description: mzTab example file for reporting a summary report of
quantification data quantified on the protein level
Mode: Complete
Type: Quantification
Available data: Proteins PSMs
Object of class "MzTab".
Description:
Mode:
Type:
Available data: SmallMolecules
Object of class "MzTab".
Description:
Mode:
Type:
Available data: SmallMolecules
Instance of class 'MSnSetList' containig 3 objects.
MSn experiment data ("OnDiskMSnExp")
Object size in memory: 0.26 Mb
- - - Spectra data - - -
MS level(s): 1 2
Number of spectra: 509
MSn retention times: 18:28 - 22:03 minutes
- - - Processing information - - -
Data loaded [Tue Apr 12 23:44:07 2022]
MSnbase version: 2.20.4
- - - Meta data - - -
phenoData
rowNames:
TMT_Erwinia_1uLSike_Top10HCD_isol2_45stepped_60min_01.mzML.gz
varLabels: sampleNames
varMetadata: labelDescription
Loaded from:
TMT_Erwinia_1uLSike_Top10HCD_isol2_45stepped_60min_01.mzML.gz
protocolData: none
featureData
featureNames: F1.S001 F1.S002 ... F1.S509 (509 total)
fvarLabels: fileIdx spIdx ... spectrum (35 total)
fvarMetadata: labelDescription
experimentData: use 'experimentData(object)'
Object of class "ReporterIons"
TMT10HCD: '10-plex TMT HCD' with 10 reporter ions
- [126] 126.1277 +/- 0.002 (#8DD3C7)
- [127N] 127.1248 +/- 0.002 (#FFFFB3)
- [127C] 127.1311 +/- 0.002 (#BEBADA)
- [128N] 128.1281 +/- 0.002 (#FB8072)
- [128C] 128.1344 +/- 0.002 (#80B1D3)
- [129N] 129.1315 +/- 0.002 (#FDB462)
- [129C] 129.1378 +/- 0.002 (#B3DE69)
- [130N] 130.1348 +/- 0.002 (#FCCDE5)
- [130C] 130.1411 +/- 0.002 (#D9D9D9)
- [131] 131.1382 +/- 0.002 (#BC80BD)
Object of class "Spectrum1"
Retention time: 0:00
MSn level: 1
Total ion count: 684
Polarity: 1
MSn experiment data ("MSnExp")
Object size in memory: 0.18 Mb
- - - Spectra data - - -
MS level(s): 2
Number of spectra: 5
MSn retention times: 25:01 - 25:02 minutes
- - - Processing information - - -
Data loaded: Tue Apr 12 23:52:23 2022
MSnbase version: 2.20.4
- - - Meta data - - -
phenoData
rowNames: dummyiTRAQ.mzXML
varLabels: sampleNames
varMetadata: labelDescription
Loaded from:
dummyiTRAQ.mzXML
protocolData: none
featureData
featureNames: F1.S1 F1.S2 ... F1.S5 (5 total)
fvarLabels: spectrum
fvarMetadata: labelDescription
experimentData: use 'experimentData(object)'
MSn experiment data ("MSnExp")
Object size in memory: 0.2 Mb
- - - Spectra data - - -
MS level(s): 2
Number of spectra: 5
MSn retention times: 25:01 - 25:02 minutes
- - - Processing information - - -
Data loaded: Tue Apr 12 23:52:23 2022
MSnbase version: 2.20.4
- - - Meta data - - -
phenoData
rowNames: dummyiTRAQ.mzXML
varLabels: sampleNames
varMetadata: labelDescription
Loaded from:
dummyiTRAQ.mzXML
protocolData: none
featureData
featureNames: F1.S1 F1.S2 ... F1.S5 (5 total)
fvarLabels: spectrum
fvarMetadata: labelDescription
experimentData: use 'experimentData(object)'
Object of class "FeaturesOfInterest"
Created on Tue Apr 12 23:52:48 2022
Description:
small foi
3 features of interest:
P20353, P53501, Q7KU78
Traceable object of class "FeaturesOfInterest"
Created on Tue Apr 12 23:52:48 2022
Description:
my description
10 features of interest:
P20353, P53501 ... Q9VCK0, Q9VIU7
A collection of 1 features of interest.
A collection of 10 features of interest.
MSpectra with 3 spectra and 1 metadata column(s):
msLevel rtime peaksCount | id
1 2 NA 3 | 1
2 2 1.23245 4 | 2
3 1 1.23245 5 | 3
MSpectra with 3 spectra and 1 metadata column(s):
msLevel rtime peaksCount | id
<integer> <numeric> <integer> | <integer>
1 2 NA 3 | 1
2 2 1.23245 4 | 2
3 1 1.23245 5 | 3
MSpectra with 3 spectra and 1 metadata column(s):
msLevel rtime peaksCount | id
<integer> <numeric> <integer> | <integer>
1 2 NA 3 | 1
2 2 1.23245 4 | 2
3 1 1.23245 5 | 3
reading dummyiTRAQ.mzid... DONE!
There were 37 warnings (use warnings() to see them)
[ FAIL 1 | WARN 1092 | SKIP 12 | PASS 2362 ]
== Skipped tests ===============================================================
* empty test (12)
== Failed tests ================================================================
-- Error (test_MSmap.R:8:1): (code run outside of `test_that()`) ---------------
Error: Can not open file C:\Users\biocbuild\AppData\Local/R/cache/R/rpx/c80c2654c33_TMT_Erwinia_1uLSike_Top10HCD_isol2_45stepped_60min_01-20141210.mzML! Original error was: Error in pwizModule$open(filename): [SpectrumList_mzML::create()] Bad istream.
Backtrace:
x
1. \-mzR::openMSfile(f) at test_MSmap.R:8:0
2. \-base::tryCatch(...)
3. \-base tryCatchList(expr, classes, parentenv, handlers)
4. \-base tryCatchOne(expr, names, parentenv, handlers[[1L]])
5. \-value[[3L]](cond)
[ FAIL 1 | WARN 1092 | SKIP 12 | PASS 2362 ]
Error: Test failures
Execution halted
|
|
MSnbase.Rcheck/examples_i386/MSnbase-Ex.timings
|
MSnbase.Rcheck/examples_x64/MSnbase-Ex.timings
|