Back to Multiple platform build/check report for BioC 3.14 |
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This page was generated on 2022-04-13 12:06:55 -0400 (Wed, 13 Apr 2022).
Hostname | OS | Arch (*) | R version | Installed pkgs |
---|---|---|---|---|
nebbiolo2 | Linux (Ubuntu 20.04.4 LTS) | x86_64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4324 |
tokay2 | Windows Server 2012 R2 Standard | x64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4077 |
machv2 | macOS 10.14.6 Mojave | x86_64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4137 |
Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X |
To the developers/maintainers of the MMDiff2 package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/MMDiff2.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
Package 1183/2083 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
MMDiff2 1.22.0 (landing page) Gabriele Schweikert
| nebbiolo2 | Linux (Ubuntu 20.04.4 LTS) / x86_64 | OK | OK | OK | |||||||||
tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | WARNINGS | OK | |||||||||
machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | |||||||||
Package: MMDiff2 |
Version: 1.22.0 |
Command: C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe --arch i386 CMD check --no-multiarch --install=check:MMDiff2.install-out.txt --library=C:\Users\biocbuild\bbs-3.14-bioc\R\library --no-vignettes --timings MMDiff2_1.22.0.tar.gz |
StartedAt: 2022-04-12 23:04:28 -0400 (Tue, 12 Apr 2022) |
EndedAt: 2022-04-12 23:09:27 -0400 (Tue, 12 Apr 2022) |
EllapsedTime: 299.3 seconds |
RetCode: 0 |
Status: WARNINGS |
CheckDir: MMDiff2.Rcheck |
Warnings: 1 |
############################################################################## ############################################################################## ### ### Running command: ### ### C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe --arch i386 CMD check --no-multiarch --install=check:MMDiff2.install-out.txt --library=C:\Users\biocbuild\bbs-3.14-bioc\R\library --no-vignettes --timings MMDiff2_1.22.0.tar.gz ### ############################################################################## ############################################################################## * using log directory 'C:/Users/biocbuild/bbs-3.14-bioc/meat/MMDiff2.Rcheck' * using R version 4.1.3 (2022-03-10) * using platform: i386-w64-mingw32 (32-bit) * using session charset: ISO8859-1 * using option '--no-vignettes' * checking for file 'MMDiff2/DESCRIPTION' ... OK * checking extension type ... Package * this is package 'MMDiff2' version '1.22.0' * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... NOTE Found the following hidden files and directories: .BBSoptions These were most likely included in error. See section 'Package structure' in the 'Writing R Extensions' manual. * checking for portable file names ... OK * checking whether package 'MMDiff2' can be installed ... WARNING Found the following significant warnings: Warning: replacing previous import 'GenomicRanges::windows' by 'grDevices::windows' when loading 'MMDiff2' See 'C:/Users/biocbuild/bbs-3.14-bioc/meat/MMDiff2.Rcheck/00install.out' for details. * checking installed package size ... OK * checking package directory ... OK * checking 'build' directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... NOTE Namespace in Imports field not imported from: 'methods' All declared Imports should be used. * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... NOTE DBAmmd: no visible global function definition for 'new' getReads: no visible global function definition for 'IRangesList' Undefined global functions or variables: IRangesList new Consider adding importFrom("methods", "new") to your NAMESPACE file (and ensure that your DESCRIPTION Imports field contains 'methods'). * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of 'data' directory ... OK * checking data for non-ASCII characters ... OK * checking data for ASCII and uncompressed saves ... OK * checking files in 'vignettes' ... OK * checking examples ... OK Examples with CPU (user + system) or elapsed time > 5s user system elapsed compDists 23.15 5.73 28.89 plotPeak 10.47 0.70 11.18 DBAmmd-Accessors 8.50 0.21 8.72 * checking for unstated dependencies in vignettes ... OK * checking package vignettes in 'inst/doc' ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: 1 WARNING, 3 NOTEs See 'C:/Users/biocbuild/bbs-3.14-bioc/meat/MMDiff2.Rcheck/00check.log' for details.
MMDiff2.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe --arch i386 CMD INSTALL --no-multiarch MMDiff2 ### ############################################################################## ############################################################################## * installing to library 'C:/Users/biocbuild/bbs-3.14-bioc/R/library' * installing *source* package 'MMDiff2' ... ** using staged installation ** R ** data ** byte-compile and prepare package for lazy loading Warning: replacing previous import 'GenomicRanges::windows' by 'grDevices::windows' when loading 'MMDiff2' ** help *** installing help indices converting help for package 'MMDiff2' finding HTML links ... done Cfp1-Peaks html DBAmmd-Accessors html DBAmmd-class html MMD html compDists html compHists html compPvals html estimateFragmentCenters html getPeakReads html mm9-Genes html myGeneric html plotDISTS4Peak html plotDists html plotPeak html reportResults html runShinyMMDiff2 html server.MMDiff2 html ui.MMDiff2 html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location Warning: replacing previous import 'GenomicRanges::windows' by 'grDevices::windows' when loading 'MMDiff2' ** testing if installed package can be loaded from final location Warning: replacing previous import 'GenomicRanges::windows' by 'grDevices::windows' when loading 'MMDiff2' ** testing if installed package keeps a record of temporary installation path * DONE (MMDiff2) Making 'packages.html' ... done
MMDiff2.Rcheck/MMDiff2-Ex.timings
name | user | system | elapsed | |
Cfp1-Peaks | 0 | 0 | 0 | |
DBAmmd-Accessors | 8.50 | 0.21 | 8.72 | |
DBAmmd-class | 0.04 | 0.02 | 0.05 | |
MMD | 0 | 0 | 0 | |
compDists | 23.15 | 5.73 | 28.89 | |
compHists | 3.24 | 0.72 | 3.95 | |
compPvals | 2.22 | 0.22 | 2.44 | |
estimateFragmentCenters | 1.95 | 0.13 | 2.08 | |
getPeakReads | 0.47 | 0.03 | 1.25 | |
mm9-Genes | 0 | 0 | 0 | |
plotDISTS4Peak | 2.14 | 0.14 | 2.28 | |
plotDists | 1.65 | 0.17 | 1.82 | |
plotPeak | 10.47 | 0.70 | 11.18 | |
reportResults | 1.88 | 0.10 | 1.97 | |
runShinyMMDiff2 | 0 | 0 | 0 | |
server.MMDiff2 | 0 | 0 | 0 | |
ui.MMDiff2 | 0 | 0 | 0 | |